Back to Long Tests report for BioC 3.17

This page was generated on 2023-10-14 21:30:02 -0400 (Sat, 14 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
palomino3Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4379
merida1macOS 12.6.4 Montereyx86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4395
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 6/31HostnameOS / ArchCHECK
biodbChebi 1.6.0  (landing page)
Pierrick Roger
Snapshot Date: 2023-10-14 09:55:02 -0400 (Sat, 14 Oct 2023)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: RELEASE_3_17
git_last_commit: f213a8b
git_last_commit_date: 2023-04-25 11:32:59 -0400 (Tue, 25 Apr 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK  
palomino3Windows Server 2022 Datacenter / x64  OK  
merida1macOS 12.6.4 Monterey / x86_64  OK  

CHECK results for biodbChebi on merida1


To the developers/maintainers of the biodbChebi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbChebi
Version: 1.6.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.6.0.tar.gz
StartedAt: 2023-10-14 11:02:41 -0400 (Sat, 14 Oct 2023)
EndedAt: 2023-10-14 11:08:45 -0400 (Sat, 14 Oct 2023)
EllapsedTime: 363.6 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbChebi.Rcheck
Warnings: 0

Tests output

biodbChebi.Rcheck/tests/testthat.Rout


R version 4.3.1 (2023-06-16) -- "Beagle Scouts"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20 (64-bit)

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Type 'license()' or 'licence()' for distribution details.

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Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2023-10-14 11:03:34.994][biodb::testContext]
biodb.INFO [2023-10-14 11:03:34.999][biodb::testContext] ********************************************************************************
biodb.INFO [2023-10-14 11:03:35.000][biodb::testContext] Test context - Generic long tests
biodb.INFO [2023-10-14 11:03:35.002][biodb::testContext] ********************************************************************************
biodb.INFO [2023-10-14 11:03:35.003][biodb::testContext]
biodb.INFO [2023-10-14 11:03:35.012][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.8.1.
biodb.DEBUG[2023-10-14 11:03:35.015][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2023-10-14 11:03:35.024][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-10-14 11:03:35.026][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-10-14 11:03:35.027][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-10-14 11:03:35.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.033][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-10-14 11:03:35.063][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-10-14 11:03:35.065][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.069][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-10-14 11:03:35.070][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-10-14 11:03:35.072][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.076][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-10-14 11:03:35.078][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-10-14 11:03:35.079][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-10-14 11:03:35.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.085][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-10-14 11:03:35.086][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-10-14 11:03:35.088][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-10-14 11:03:35.089][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.094][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-10-14 11:03:35.095][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-10-14 11:03:35.097][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.099][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.102][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-10-14 11:03:35.103][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-10-14 11:03:35.105][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-10-14 11:03:35.106][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.110][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-10-14 11:03:35.112][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-10-14 11:03:35.113][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.118][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-10-14 11:03:35.119][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-10-14 11:03:35.121][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-10-14 11:03:35.122][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.126][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-10-14 11:03:35.128][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-10-14 11:03:35.129][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-10-14 11:03:35.131][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-10-14 11:03:35.132][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-10-14 11:03:35.134][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-10-14 11:03:35.135][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.140][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-10-14 11:03:35.141][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-10-14 11:03:35.143][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.147][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-10-14 11:03:35.149][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-10-14 11:03:35.151][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.155][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-10-14 11:03:35.156][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-10-14 11:03:35.158][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.162][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-10-14 11:03:35.164][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-10-14 11:03:35.165][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.169][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-10-14 11:03:35.171][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-10-14 11:03:35.172][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.177][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-10-14 11:03:35.179][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-10-14 11:03:35.192][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-10-14 11:03:35.194][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.199][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-10-14 11:03:35.201][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-10-14 11:03:35.202][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-10-14 11:03:35.204][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.212][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-10-14 11:03:35.266][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-10-14 11:03:35.295][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-10-14 11:03:35.296][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:03:35.298][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:03:35.299][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:03:35.300][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:03:35.301][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-10-14 11:03:35.302][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:03:35.304][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-10-14 11:03:35.305][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:03:35.306][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:03:35.307][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-10-14 11:03:35.308][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:03:35.310][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:03:35.311][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-10-14 11:03:35.312][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-10-14 11:03:35.312][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-10-14 11:03:35.312][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-10-14 11:03:35.312][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-10-14 11:03:35.312][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-10-14 11:03:35.313][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-10-14 11:03:35.315][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:03:35.316][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:03:35.317][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:03:35.318][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:03:35.319][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:03:35.320][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:03:35.321][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:03:35.323][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:03:35.324][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:03:35.325][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-10-14 11:03:35.326][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:03:35.328][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-10-14 11:03:35.330][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-10-14 11:03:35.331][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-10-14 11:03:35.332][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:03:35.334][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:03:35.335][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:03:35.336][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:03:35.337][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-10-14 11:03:35.338][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:03:35.340][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-10-14 11:03:35.341][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:03:35.342][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:03:35.343][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-10-14 11:03:35.345][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:03:35.346][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:03:35.347][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-10-14 11:03:35.348][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-10-14 11:03:35.348][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-10-14 11:03:35.348][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-10-14 11:03:35.348][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-10-14 11:03:35.348][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-10-14 11:03:35.350][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-10-14 11:03:35.351][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:03:35.352][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:03:35.353][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:03:35.354][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:03:35.356][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:03:35.357][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:03:35.358][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:03:35.359][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:03:35.360][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:03:35.361][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-10-14 11:03:35.363][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:03:35.364][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-10-14 11:03:35.366][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:03:35.368][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-10-14 11:03:35.369][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:03:35.370][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:03:35.371][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:03:35.372][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:03:35.374][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-10-14 11:03:35.375][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:03:35.376][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-10-14 11:03:35.377][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:03:35.379][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-10-14 11:03:35.380][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-10-14 11:03:35.381][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:03:35.382][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:03:35.384][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-10-14 11:03:35.385][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:03:35.386][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-10-14 11:03:35.387][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:03:35.388][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:03:35.390][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:03:35.391][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:03:35.392][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:03:35.393][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:03:35.394][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:03:35.396][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:03:35.397][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:03:35.398][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-10-14 11:03:35.399][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:03:35.400][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-10-14 11:03:35.403][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:03:35.404][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-10-14 11:03:35.405][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:03:35.406][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:03:35.408][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:03:35.409][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:03:35.410][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-10-14 11:03:35.411][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-10-14 11:03:35.413][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-10-14 11:03:35.414][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:03:35.415][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-10-14 11:03:35.416][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-10-14 11:03:35.418][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:03:35.419][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:03:35.420][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-10-14 11:03:35.421][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:03:35.422][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-10-14 11:03:35.424][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:03:35.425][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:03:35.426][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:03:35.427][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:03:35.428][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:03:35.430][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:03:35.431][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:03:35.432][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:03:35.433][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:03:35.434][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-10-14 11:03:35.436][self$setPropertyValue]
biodb.DEBUG[2023-10-14 11:03:35.440][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-10-14 11:03:35.441][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.460][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.472][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.477][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.483][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.488][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.500][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.507][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.512][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.518][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.523][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.540][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-10-14 11:03:35.546][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-10-14 11:03:35.548][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-10-14 11:03:35.549][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-10-14 11:03:35.551][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-10-14 11:03:35.553][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-10-14 11:03:35.554][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-10-14 11:03:35.556][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-10-14 11:03:35.558][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-10-14 11:03:35.559][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-10-14 11:03:35.561][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-10-14 11:03:35.563][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-10-14 11:03:35.565][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-10-14 11:03:35.566][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-10-14 11:03:35.568][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-10-14 11:03:35.570][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-10-14 11:03:35.571][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-10-14 11:03:35.573][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-10-14 11:03:35.575][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-10-14 11:03:35.577][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-10-14 11:03:35.578][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-10-14 11:03:35.580][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-10-14 11:03:35.582][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-10-14 11:03:35.585][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-10-14 11:03:35.587][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-10-14 11:03:35.589][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-10-14 11:03:35.596][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-10-14 11:03:35.598][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-10-14 11:03:35.600][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-10-14 11:03:35.601][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-10-14 11:03:35.603][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-10-14 11:03:35.605][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-10-14 11:03:35.607][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-10-14 11:03:35.609][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-10-14 11:03:35.610][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-10-14 11:03:35.612][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-10-14 11:03:35.614][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-10-14 11:03:35.616][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-10-14 11:03:35.618][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-10-14 11:03:35.619][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-10-14 11:03:35.621][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-10-14 11:03:35.623][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-10-14 11:03:35.625][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-10-14 11:03:35.627][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-10-14 11:03:35.628][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-10-14 11:03:35.630][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-10-14 11:03:35.632][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-10-14 11:03:35.634][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-10-14 11:03:35.635][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-10-14 11:03:35.637][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-10-14 11:03:35.639][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-10-14 11:03:35.640][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-10-14 11:03:35.642][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-10-14 11:03:35.643][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-10-14 11:03:35.645][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-10-14 11:03:35.647][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-10-14 11:03:35.649][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-10-14 11:03:35.650][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-10-14 11:03:35.652][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-10-14 11:03:35.654][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-10-14 11:03:35.655][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-10-14 11:03:35.657][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-10-14 11:03:35.659][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-10-14 11:03:35.660][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-10-14 11:03:35.662][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-10-14 11:03:35.664][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-10-14 11:03:35.665][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-10-14 11:03:35.667][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-10-14 11:03:35.669][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-10-14 11:03:35.671][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-10-14 11:03:35.672][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-10-14 11:03:35.674][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-10-14 11:03:35.676][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-10-14 11:03:35.678][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-10-14 11:03:35.679][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-10-14 11:03:35.681][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-10-14 11:03:35.683][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-10-14 11:03:35.684][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-10-14 11:03:35.686][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-10-14 11:03:35.688][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-10-14 11:03:35.689][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-10-14 11:03:35.691][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-10-14 11:03:35.693][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-10-14 11:03:35.700][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-10-14 11:03:35.702][initialize] This is biodb version 1.8.1.
biodb.DEBUG[2023-10-14 11:03:35.706][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-10-14 11:03:35.707][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.709][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:35.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:35.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.724][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:35.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:35.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:35.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:35.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.740][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:35.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:35.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:35.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:35.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.755][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:35.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:35.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:35.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:35.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.771][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:35.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:35.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:35.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:35.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.788][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:35.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:35.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.796][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:35.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:35.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.804][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:35.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:35.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.812][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:35.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:35.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.820][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:35.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:35.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:35.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:35.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:35.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:35.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.843][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-10-14 11:03:35.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:35.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:35.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:35.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:35.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:35.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:35.852][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.17-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2023-10-14 11:03:35.863][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2023-10-14 11:03:35.866][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-10-14 11:03:35.867][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2023-10-14 11:03:35.868][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-10-14 11:03:35.869][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-10-14 11:03:35.871][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-10-14 11:03:35.872][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-10-14 11:03:35.873][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-10-14 11:03:35.874][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2023-10-14 11:03:35.876][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-10-14 11:03:35.877][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-10-14 11:03:35.878][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-10-14 11:03:35.879][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2023-10-14 11:03:35.881][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-10-14 11:03:35.882][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2023-10-14 11:03:35.882][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2023-10-14 11:03:35.882][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2023-10-14 11:03:35.882][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2023-10-14 11:03:35.882][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2023-10-14 11:03:35.882][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2023-10-14 11:03:35.882][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2023-10-14 11:03:35.882][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2023-10-14 11:03:35.882][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2023-10-14 11:03:35.882][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2023-10-14 11:03:35.882][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2023-10-14 11:03:35.884][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-10-14 11:03:35.885][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-10-14 11:03:35.885][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-10-14 11:03:35.885][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-10-14 11:03:35.886][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-10-14 11:03:35.887][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:03:35.888][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:03:35.889][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-10-14 11:03:35.891][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-10-14 11:03:35.892][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-10-14 11:03:35.893][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-10-14 11:03:35.899][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:03:35.899][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2023-10-14 11:03:35.901][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-10-14 11:03:35.902][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-10-14 11:03:35.903][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-10-14 11:03:35.904][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2023-10-14 11:03:35.904][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2023-10-14 11:03:35.912][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-10-14 11:03:35.914][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-10-14 11:03:35.916][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2023-10-14 11:03:35.918][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-10-14 11:03:35.919][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-10-14 11:03:35.921][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-10-14 11:03:35.946][super$initialize] Initialize connector chebi.
biodb.DEBUG[2023-10-14 11:03:35.947][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2023-10-14 11:03:35.952][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2023-10-14 11:03:35.957][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2023-10-14 11:03:35.962][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-10-14 11:03:35.963][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-10-14 11:03:35.965][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2023-10-14 11:03:35.966][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2023-10-14 11:03:35.977][biodb::testThat]
biodb.INFO [2023-10-14 11:03:35.979][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2023-10-14 11:03:35.980][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:03:35.981][biodb::testThat]
biodb.TRACE[2023-10-14 11:03:35.985][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.17-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2023-10-14 11:03:35.988][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:03:35.992][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:03:36.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:03:36.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:36.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:36.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:36.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:36.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:36.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:03:36.036][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:36.037][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:36.038][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.040][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:36.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:36.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.062][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:36.064][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:36.065][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.066][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.101][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:36.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:36.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.106][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:36.107][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:36.109][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.110][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.111][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:36.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:36.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.116][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:36.118][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:36.119][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.120][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:36.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:36.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.126][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:36.128][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:36.129][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.130][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:36.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:36.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.136][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:36.138][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:36.139][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.140][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.141][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:36.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:36.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.146][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:03:36.148][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:36.149][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.150][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.152][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:03:36.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:36.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.157][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:36.158][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:36.159][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.160][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:36.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:36.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.167][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:36.168][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:36.169][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.170][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.172][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:36.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:36.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.177][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:03:36.178][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:36.180][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.181][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.182][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:03:36.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:36.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.187][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:36.189][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:36.190][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.191][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.192][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:36.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:36.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:36.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:36.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:36.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:36.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:36.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:36.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:36.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:36.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:36.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:36.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:36.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:36.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:36.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:36.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:36.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:36.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:36.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:36.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:36.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:36.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:03:36.297][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2023-10-14 11:03:36.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:36.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:36.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:36.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:36.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:36.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:36.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.343][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:36.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:36.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:36.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:36.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:36.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:36.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.357][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:03:36.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:03:36.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.362][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:03:36.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:03:36.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.367][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-10-14 11:03:36.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-10-14 11:03:36.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.372][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-10-14 11:03:36.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-10-14 11:03:36.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:36.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:36.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:36.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:36.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:36.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:36.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:36.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:36.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:36.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:36.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:36.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:36.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:36.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:36.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:36.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:36.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:36.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:36.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:36.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:36.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:36.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:36.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:36.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:36.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:36.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:36.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:36.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:36.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.500][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:36.502][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:36.503][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.504][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:36.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:36.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:36.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:36.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:36.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:36.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:36.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:36.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.536][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:36.537][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:36.538][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.539][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:36.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:36.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.556][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:36.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:36.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.561][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:36.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:36.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.566][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:36.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:36.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.571][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:36.572][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:36.573][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.574][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.575][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:36.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:36.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.591][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:36.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:36.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.596][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:36.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:36.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.601][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:36.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:36.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.605][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:36.607][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:36.608][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.609][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.610][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:36.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:36.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:36.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:36.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:36.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:36.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:36.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:36.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.640][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:36.641][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:36.642][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.644][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:36.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:36.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:36.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:36.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:36.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:36.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:36.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:36.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.675][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:36.676][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:36.677][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.678][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:36.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:36.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.695][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:36.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:36.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.700][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:36.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:36.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.705][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:36.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:36.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.709][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:36.711][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:36.712][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.713][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.714][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:36.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:36.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.752][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:03:36.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:36.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.757][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:03:36.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:36.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.761][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:03:36.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:36.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.766][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:03:36.767][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:36.769][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.770][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.771][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:03:36.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:36.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.786][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:36.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:36.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.791][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:36.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:36.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.796][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:36.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:36.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.800][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:36.802][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:36.803][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.804][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.805][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:36.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:36.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.820][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:36.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:36.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.825][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:36.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:36.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.830][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:36.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:36.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.835][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:36.836][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:36.837][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.838][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.839][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:36.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:36.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:36.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:36.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:36.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:36.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:36.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:36.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.869][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:36.870][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:36.871][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.872][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.874][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:36.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:36.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:36.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:36.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:36.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:36.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.898][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:36.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:36.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.903][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:36.905][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:36.906][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.907][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.908][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:36.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:36.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.924][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:36.925][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:36.926][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.927][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.934][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:36.936][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:36.937][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.938][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.945][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:36.946][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:36.947][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.949][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.956][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:36.957][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:36.958][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.959][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.967][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:36.968][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:36.970][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.971][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.978][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:36.980][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:36.981][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:36.982][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:36.992][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:36.994][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:37.000][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.002][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.009][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:37.010][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:37.012][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.013][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.021][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:03:37.022][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:37.024][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.025][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.032][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:37.034][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:37.035][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.036][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.044][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:37.045][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:37.046][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.048][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.072][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.17-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2023-10-14 11:03:37.124][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:03:37.126][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:03:37.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:03:37.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:37.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:37.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:37.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:37.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:37.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:03:37.149][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:37.150][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:37.151][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.153][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:37.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:37.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.181][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:37.183][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:37.184][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.185][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.186][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:37.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:37.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.191][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:37.193][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:37.194][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.195][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.197][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:37.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:37.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.202][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:37.203][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:37.205][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.206][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:37.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:37.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.212][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:37.214][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:37.215][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.216][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:37.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:37.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.223][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:37.224][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:37.225][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.227][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.228][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:37.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:37.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.234][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:03:37.235][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:37.237][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.239][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.241][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:03:37.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:37.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.249][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:37.251][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:37.252][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.255][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:37.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:37.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.263][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:37.265][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:37.267][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.268][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.276][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:37.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:37.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.281][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:03:37.282][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:37.283][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.284][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.286][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:03:37.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:37.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.291][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:37.292][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:37.293][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.294][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.296][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:37.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:37.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:37.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:37.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:37.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:37.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:37.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:37.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:37.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:37.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:37.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:37.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:37.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:37.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:37.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:37.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:37.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:37.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:37.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:37.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:37.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:37.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:03:37.348][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2023-10-14 11:03:37.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:37.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:37.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:37.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:37.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:37.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:37.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:37.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:37.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:37.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:37.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:37.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:37.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.405][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:03:37.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:03:37.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.410][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:03:37.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:03:37.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.415][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-10-14 11:03:37.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-10-14 11:03:37.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.420][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-10-14 11:03:37.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-10-14 11:03:37.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:37.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:37.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:37.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:37.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:37.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:37.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:37.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:37.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:37.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:37.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:37.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:37.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:37.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:37.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:37.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:37.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:37.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:37.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:37.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:37.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:37.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:37.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:37.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:37.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:37.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:37.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:37.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:37.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.535][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:37.536][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:37.537][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.538][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:37.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:37.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:37.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:37.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:37.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:37.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:37.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:37.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:37.571][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:37.572][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.573][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:37.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:37.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.590][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:37.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:37.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.595][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:37.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:37.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.600][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:37.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:37.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.605][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:37.606][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:37.607][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.608][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.609][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:37.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:37.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.625][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:37.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:37.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.629][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:37.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:37.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.634][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:37.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:37.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.639][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:37.640][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:37.641][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.642][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.644][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:37.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:37.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.659][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:03:37.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:37.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:37.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:37.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:37.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:37.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.673][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:03:37.674][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:37.676][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.677][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.678][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:03:37.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:37.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:37.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:37.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:37.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:37.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:37.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:37.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.708][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:37.709][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:37.710][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.711][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:37.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:37.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:37.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:37.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:37.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:37.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:37.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:37.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.743][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:37.745][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:37.746][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.747][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:37.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:37.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.764][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:37.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:37.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.768][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:37.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:37.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.773][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:37.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:37.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.778][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:37.784][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:37.786][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.787][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.788][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:37.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:37.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.803][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:03:37.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:37.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.808][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:03:37.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:37.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.813][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:03:37.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:37.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.818][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:03:37.819][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:37.820][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.821][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.822][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:03:37.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:37.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.838][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:37.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:37.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.842][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:37.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:37.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.847][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:37.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:37.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.852][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:37.853][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:37.854][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.856][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.857][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:37.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:37.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.872][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:37.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:37.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.877][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:37.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:37.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.882][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:37.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:37.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.887][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:37.888][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:37.889][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.890][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.891][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:37.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:37.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:37.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:37.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:37.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:37.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.916][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:37.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:37.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.921][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:37.922][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:37.923][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.925][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:37.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:37.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:37.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:37.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:37.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:37.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:37.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:37.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.956][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:37.957][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:37.958][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.959][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.961][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:37.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:37.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.976][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:37.977][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:37.978][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.980][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.987][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:37.988][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:37.989][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:37.990][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:37.997][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:37.999][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:38.000][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.001][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.008][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:38.009][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:38.010][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.011][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.019][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:38.020][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:38.021][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.022][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.029][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:38.031][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:38.037][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.038][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.045][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:38.047][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:38.048][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.049][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.056][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:38.057][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:38.058][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.059][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.066][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:03:38.068][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:38.069][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.070][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.077][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:38.078][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:38.079][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.080][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.087][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:38.089][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:38.090][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.091][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.099][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.17-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2023-10-14 11:03:38.100][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:03:38.102][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:03:38.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:03:38.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:38.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:38.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:38.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:38.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:38.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:03:38.119][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:38.120][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:38.121][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.122][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:38.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:38.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.129][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:38.130][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:38.131][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.132][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.134][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:38.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:38.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.138][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:38.140][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:38.141][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.142][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.143][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:38.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:38.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.148][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:38.149][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:38.151][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.152][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:38.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:38.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.158][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:38.159][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:38.160][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.161][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:38.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:38.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.168][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:38.169][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:38.170][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.171][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.173][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:38.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:38.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.178][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:03:38.179][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:38.180][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.181][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.183][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:03:38.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:38.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.187][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:38.189][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:38.190][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.191][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:38.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:38.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.197][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:38.198][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:38.199][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.201][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.202][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:38.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:38.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.207][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:03:38.208][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:38.209][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.211][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.212][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:03:38.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:38.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.217][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:38.218][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:38.219][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.220][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.222][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:38.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:38.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:38.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:38.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:38.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:38.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:38.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:38.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:38.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:38.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:38.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:38.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:38.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:38.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:38.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:38.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:38.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:38.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:38.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:38.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:38.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:38.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:03:38.274][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2023-10-14 11:03:38.276][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:38.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:38.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.281][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:38.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:38.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.286][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:38.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:38.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:38.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:38.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:38.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:38.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:38.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:38.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.310][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:03:38.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:03:38.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.315][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:03:38.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:03:38.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.320][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-10-14 11:03:38.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-10-14 11:03:38.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.325][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-10-14 11:03:38.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-10-14 11:03:38.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:38.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:38.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:38.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:38.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:38.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:38.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:38.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:38.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:38.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:38.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:38.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:38.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:38.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:38.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:38.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:38.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:38.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:38.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:38.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:38.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:38.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:38.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:38.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:38.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:38.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:38.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:38.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:38.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.421][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:38.422][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:38.423][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.424][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:38.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:38.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.441][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:38.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:38.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.446][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:38.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:38.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.450][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:38.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:38.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.455][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:38.456][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:38.458][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.459][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.460][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:38.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:38.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:38.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:38.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.480][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:38.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:38.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:38.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:38.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.490][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:38.491][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:38.492][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.493][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:38.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:38.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:38.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:38.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:38.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:38.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:38.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:38.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.524][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:38.525][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:38.526][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.527][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:38.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:38.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.549][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:38.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:38.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.553][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:38.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:38.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.558][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:38.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:38.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.563][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:38.564][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:38.565][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.566][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.567][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:38.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:38.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:38.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:38.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:38.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:38.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:38.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:38.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.597][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:38.598][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:38.599][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.600][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:38.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:38.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:38.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:38.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:38.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:38.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:38.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:38.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.631][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:38.632][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:38.633][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.634][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:38.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:38.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.651][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:38.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:38.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.656][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:38.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:38.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.660][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:38.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:38.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.665][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:38.666][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:38.667][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.668][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.670][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:38.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:38.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.685][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:03:38.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:38.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.690][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:03:38.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:38.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.694][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:03:38.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:38.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.699][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:03:38.700][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:38.701][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.703][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.704][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:03:38.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:38.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.719][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:38.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:38.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.724][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:38.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:38.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.729][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:38.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:38.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.733][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:38.735][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:38.736][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.737][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.738][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:38.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:38.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.753][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:38.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:38.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.758][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:38.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:38.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:38.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:38.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.768][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:38.769][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:38.770][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.771][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.772][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:38.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:38.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.788][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:38.790][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:38.791][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.792][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.803][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:38.804][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:38.806][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.807][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.814][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:38.815][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:38.816][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.817][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.824][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:38.825][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:38.826][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.827][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.834][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:38.835][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:38.836][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.838][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.844][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:38.846][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:38.847][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.848][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.855][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:38.856][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:38.857][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.858][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.865][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:38.866][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:38.867][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.868][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.875][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:03:38.877][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:38.878][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.879][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.886][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:38.887][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:38.888][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.889][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:38.896][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:38.897][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:38.899][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:38.900][ef$get] fields variable is a list.
biodb.INFO [2023-10-14 11:03:38.911][biodb::testThat]
biodb.INFO [2023-10-14 11:03:38.912][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2023-10-14 11:03:38.914][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:03:38.915][biodb::testThat]
biodb.DEBUG[2023-10-14 11:03:38.917][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2023-10-14 11:03:38.925][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2023-10-14 11:03:38.929][cch$loadFileContent] Trying to load 3 files from cache: [3]: "15440, 2528, 7799".
biodb.TRACE[2023-10-14 11:03:38.931][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2023-10-14 11:03:38.932][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:03:38.933][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:03:38.934][conn$getEntryContent] 3 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:03:38.936][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:03:38.937][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:03:38.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:03:38.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:38.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:38.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:38.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:38.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:38.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:38.958][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.DEBUG[2023-10-14 11:03:38.983][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:03:38.985][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:03:38.986][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.TRACE[2023-10-14 11:03:39.855][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
biodb.DEBUG[2023-10-14 11:03:40.576][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:03:40.579][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.content"
biodb.TRACE[2023-10-14 11:03:40.597][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.request"
biodb.DEBUG[2023-10-14 11:03:40.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:03:40.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:40.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:40.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:40.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:40.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:40.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:40.639][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
biodb.DEBUG[2023-10-14 11:03:40.658][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:03:40.660][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:03:40.678][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
biodb.TRACE[2023-10-14 11:03:41.308][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
biodb.DEBUG[2023-10-14 11:03:41.940][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:03:41.942][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65267cab26ad2d71ed08b12751f9bef2.content"
biodb.TRACE[2023-10-14 11:03:41.947][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65267cab26ad2d71ed08b12751f9bef2.request"
biodb.DEBUG[2023-10-14 11:03:41.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:03:41.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:41.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:41.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:41.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:41.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:41.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:41.974][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
biodb.DEBUG[2023-10-14 11:03:41.977][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:03:41.978][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:03:41.980][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
biodb.TRACE[2023-10-14 11:03:42.630][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
biodb.DEBUG[2023-10-14 11:03:43.276][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:03:43.279][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/07eb1d5438367a7b1616709944d88b07.content"
biodb.TRACE[2023-10-14 11:03:43.283][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/07eb1d5438367a7b1616709944d88b07.request"
biodb.TRACE[2023-10-14 11:03:43.287][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml"
biodb.DEBUG[2023-10-14 11:03:43.291][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:03:43.292][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2023-10-14 11:03:43.294][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2023-10-14 11:03:43.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:03:43.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:43.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:43.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:43.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:43.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:43.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:03:43.311][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:43.312][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:43.313][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.315][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:43.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:43.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.321][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:43.322][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:43.323][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.324][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.326][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:43.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:43.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.330][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:43.332][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:43.333][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.334][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.335][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:43.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:43.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.340][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:43.341][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:43.343][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.344][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:43.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:43.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.350][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:43.351][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:43.352][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.353][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:43.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:43.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.360][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:43.361][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:43.362][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.364][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.365][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:43.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:43.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.370][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:03:43.371][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:43.372][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.373][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.375][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:03:43.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:43.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.380][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:43.381][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:43.382][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.383][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:43.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:43.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.389][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:43.391][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:43.392][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.393][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.395][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:43.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:43.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.399][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:03:43.401][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:43.402][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.403][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.404][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:03:43.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:43.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.409][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:43.410][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:43.412][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.413][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.414][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:43.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:43.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:43.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:43.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:43.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:43.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:43.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:43.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:43.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:43.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:43.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:43.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:43.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:43.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:43.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:43.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:03:43.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:03:43.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:43.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:43.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:43.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:43.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:43.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:03:43.467][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:43.468][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:43.469][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.470][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:43.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:43.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.484][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:43.485][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:43.486][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.487][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.488][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:43.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:43.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.493][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:43.494][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:43.495][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.497][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.498][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:43.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:43.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.503][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:43.504][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:43.505][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.506][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.508][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:43.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:43.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.512][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:43.514][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:43.515][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.516][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:43.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:43.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.522][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:43.523][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:43.524][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.525][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.527][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:43.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:43.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.531][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:03:43.533][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:43.534][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.535][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.536][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:03:43.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:43.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.541][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:43.542][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:43.543][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.545][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:43.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:43.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.551][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:43.552][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:43.553][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.554][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.556][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:43.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:43.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.561][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:03:43.562][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:43.563][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.564][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.565][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:03:43.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:43.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.570][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:43.571][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:43.572][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.574][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.575][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:43.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:43.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:43.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:43.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:43.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:43.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:43.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:43.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:43.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:43.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:43.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:43.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:43.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:43.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:43.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:43.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:03:43.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:03:43.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:43.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:43.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:43.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:43.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:43.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:03:43.627][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:43.628][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:43.630][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.631][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:43.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:43.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.637][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:43.638][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:43.639][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.640][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.642][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:43.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:43.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.646][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:43.648][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:43.649][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.650][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.651][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:43.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:43.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.656][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:43.657][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:43.659][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.660][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.661][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:43.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:43.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.666][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:43.667][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:43.668][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.669][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:43.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:43.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.676][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:43.677][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:43.678][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.679][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.681][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:43.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:43.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.686][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:03:43.691][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:43.692][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.693][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.695][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:03:43.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:43.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.700][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:43.701][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:43.702][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.703][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:43.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:43.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.709][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:43.711][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:43.712][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.713][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.714][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:43.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:43.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.719][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:03:43.721][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:43.722][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.723][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.724][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:03:43.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:43.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.729][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:43.730][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:43.731][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.732][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.734][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:43.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:43.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:43.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:43.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:43.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:43.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:43.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:43.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:43.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:43.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:43.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:43.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:43.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:43.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:43.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:43.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:43.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:43.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:43.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:43.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:43.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:43.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:43.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:43.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:43.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:43.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:43.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:43.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:43.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:43.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:43.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:43.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:43.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:43.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:03:43.814][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2023-10-14 11:03:43.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-10-14 11:03:43.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-10-14 11:03:43.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:03:43.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:03:43.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:03:43.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:03:43.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-10-14 11:03:43.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-10-14 11:03:43.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:03:43.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:03:43.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:03:43.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:03:43.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-10-14 11:03:43.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-10-14 11:03:43.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:03:43.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-10-14 11:03:43.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:03:43.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-10-14 11:03:43.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-10-14 11:03:43.882][biodb::testThat]
biodb.INFO [2023-10-14 11:03:43.883][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2023-10-14 11:03:43.884][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:03:43.885][biodb::testThat]
biodb.TRACE[2023-10-14 11:03:43.889][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:43.891][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:43.892][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.893][ef$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:03:43.894][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2023-10-14 11:03:43.933][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:43.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:43.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.938][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:43.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:43.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:43.943][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:43.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:43.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:43.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:03:43.951][function(conn, opt)] With value "squalene".
biodb.DEBUG[2023-10-14 11:03:43.954][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2023-10-14 11:03:43.957][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:03:43.977][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2023-10-14 11:03:43.979][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:03:43.981][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2023-10-14 11:03:43.985][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:03:43.990][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:03:43.991][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:03:43.993][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2023-10-14 11:03:44.765][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2023-10-14 11:03:45.670][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:03:45.672][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content"
biodb.TRACE[2023-10-14 11:03:45.677][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.request"
biodb.DEBUG[2023-10-14 11:03:45.680][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2023-10-14 11:03:45.698][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:45.700][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:45.701][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:45.702][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:45.703][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:45.704][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:45.705][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:45.706][ef$get] fields variable is a list.
biodb.INFO [2023-10-14 11:03:45.712][biodb::testThat]
biodb.INFO [2023-10-14 11:03:45.714][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2023-10-14 11:03:45.715][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:03:45.716][biodb::testThat]
biodb.TRACE[2023-10-14 11:03:45.752][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:45.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:45.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:45.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:45.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:45.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:45.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:45.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:45.762][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:45.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:45.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:45.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:03:45.848][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:03:45.852][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:03:45.854][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-10-14 11:03:45.855][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:03:45.857][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2023-10-14 11:03:45.880][biodb::testThat]
biodb.INFO [2023-10-14 11:03:45.881][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2023-10-14 11:03:45.883][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:03:45.884][biodb::testThat]
biodb.TRACE[2023-10-14 11:03:45.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:45.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:45.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:45.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:45.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:45.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:45.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:45.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:45.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:45.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:45.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:45.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:45.911][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:45.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:45.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:45.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:45.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:45.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:45.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:45.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:45.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:45.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:45.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:45.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:45.925][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:03:45.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:03:45.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:45.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:45.929][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:03:45.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:03:45.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:45.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:45.934][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-10-14 11:03:45.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-10-14 11:03:45.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:45.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:45.939][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-10-14 11:03:45.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-10-14 11:03:45.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:45.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:45.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:45.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:45.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:45.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:45.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:45.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:45.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:45.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:45.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:45.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:45.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:45.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:45.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:45.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:45.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:45.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:45.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:45.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:45.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:45.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:45.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:45.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:45.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:45.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:45.987][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:03:45.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:03:45.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:45.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:45.992][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-10-14 11:03:45.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-10-14 11:03:45.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:45.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:45.997][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-10-14 11:03:45.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-10-14 11:03:45.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:46.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:46.001][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-10-14 11:03:46.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-10-14 11:03:46.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:46.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-10-14 11:03:46.014][biodb::testThat]
biodb.INFO [2023-10-14 11:03:46.015][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2023-10-14 11:03:46.016][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:03:46.017][biodb::testThat]
biodb.INFO [2023-10-14 11:03:46.029][biodb::testThat]
biodb.INFO [2023-10-14 11:03:46.031][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2023-10-14 11:03:46.032][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:03:46.033][biodb::testThat]
biodb.INFO [2023-10-14 11:03:46.047][biodb::testThat]
biodb.INFO [2023-10-14 11:03:46.048][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2023-10-14 11:03:46.049][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:03:46.050][biodb::testThat]
biodb.DEBUG[2023-10-14 11:03:46.055][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2023-10-14 11:03:46.873][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2023-10-14 11:03:48.226][biodb::testThat]
biodb.INFO [2023-10-14 11:03:48.228][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2023-10-14 11:03:48.229][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:03:48.230][biodb::testThat]
biodb.DEBUG[2023-10-14 11:03:48.907][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2023-10-14 11:03:49.582][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:49.583][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:49.585][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:49.586][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:49.587][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:49.588][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:49.589][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:49.590][ef$get] fields variable is a list.
biodb.INFO [2023-10-14 11:03:49.592][biodb::testThat]
biodb.INFO [2023-10-14 11:03:49.593][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2023-10-14 11:03:49.595][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:03:49.596][biodb::testThat]
biodb.TRACE[2023-10-14 11:03:49.611][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:49.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:49.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:49.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:49.616][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:49.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:49.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:49.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:49.621][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:49.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:49.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:49.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:03:49.730][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:03:49.734][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:03:49.735][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-10-14 11:03:49.737][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:03:49.738][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2023-10-14 11:03:49.813][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:03:49.817][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:03:49.819][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-10-14 11:03:49.820][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:03:49.822][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2023-10-14 11:03:49.841][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-10-14 11:03:49.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-10-14 11:03:49.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:49.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:49.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:49.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:49.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:49.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:49.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:49.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:49.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:49.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:49.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:49.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:49.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:49.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:49.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:49.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:49.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:49.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:49.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:49.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:49.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:49.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:03:49.890][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:03:49.895][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:03:49.896][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:03:49.898][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2023-10-14 11:03:50.550][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2023-10-14 11:03:51.193][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:03:51.196][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content"
biodb.TRACE[2023-10-14 11:03:51.201][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.request"
biodb.DEBUG[2023-10-14 11:03:51.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:03:51.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:51.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:51.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:51.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:51.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:51.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:51.217][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2023-10-14 11:03:51.275][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:03:51.277][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2023-10-14 11:03:51.278][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:03:51.280][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:03:51.281][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:03:51.282][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:03:51.283][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:03:51.284][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:03:51.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:03:51.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:51.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:51.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:51.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:51.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:51.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:51.315][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.DEBUG[2023-10-14 11:03:51.319][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:03:51.320][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:03:51.322][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.TRACE[2023-10-14 11:03:51.969][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288).
biodb.DEBUG[2023-10-14 11:03:52.612][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:03:52.614][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.content"
biodb.TRACE[2023-10-14 11:03:52.619][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.request"
biodb.TRACE[2023-10-14 11:03:52.622][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml"
biodb.DEBUG[2023-10-14 11:03:52.624][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:03:52.626][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:03:52.627][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:03:52.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:03:52.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:52.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:52.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:52.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:52.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:52.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:03:52.654][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:52.656][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:52.657][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.658][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:52.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:52.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.664][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:52.665][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:52.666][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.667][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.669][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:52.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:52.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.674][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:52.675][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:52.676][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.677][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.679][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:52.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:52.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.684][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:52.685][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:52.686][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.687][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:52.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:52.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.694][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:52.695][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:52.696][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.697][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:52.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:52.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.703][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:52.705][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:52.706][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.707][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.708][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:03:52.709][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:52.711][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.712][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.713][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:03:52.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:52.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.718][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:52.719][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:52.720][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.721][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:52.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:52.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.728][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:52.729][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:52.730][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.731][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.733][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:52.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:52.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.737][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:03:52.739][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:52.740][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.741][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.742][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:03:52.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:52.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.747][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:52.748][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:52.749][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.751][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.752][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:52.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:52.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:52.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:52.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:52.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:52.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:52.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:52.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:52.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:52.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:52.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:52.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:52.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:52.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:52.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:52.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:52.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:52.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:52.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:52.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:52.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:52.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:03:52.804][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2023-10-14 11:03:52.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:52.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:52.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:52.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:52.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:52.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:52.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:52.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:52.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:03:52.831][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:03:52.839][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:03:52.841][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:03:52.843][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2023-10-14 11:03:53.486][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2023-10-14 11:03:53.990][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:03:53.993][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content"
biodb.TRACE[2023-10-14 11:03:53.998][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.request"
biodb.DEBUG[2023-10-14 11:03:54.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:03:54.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:54.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:54.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:54.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:54.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:54.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:03:54.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:54.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:54.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:54.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:54.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:54.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:54.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:54.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:54.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:54.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:54.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:54.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:03:54.047][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:03:54.074][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:03:54.075][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:03:54.078][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2023-10-14 11:03:54.717][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2023-10-14 11:03:55.365][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:03:55.367][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content"
biodb.TRACE[2023-10-14 11:03:55.372][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.request"
biodb.DEBUG[2023-10-14 11:03:55.405][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:03:55.409][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:03:55.411][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-10-14 11:03:55.412][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:03:55.414][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2023-10-14 11:03:55.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:03:55.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:55.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:55.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:55.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:55.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:55.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:03:55.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:55.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:55.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:55.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:55.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:55.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:55.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:55.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:55.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:55.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:55.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:55.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:03:55.445][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:03:55.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:55.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:55.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:55.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:55.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:55.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:55.469][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2023-10-14 11:03:55.470][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:03:55.472][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2023-10-14 11:03:55.473][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:03:55.475][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:03:55.476][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:03:55.477][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:03:55.478][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:03:55.479][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:03:55.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:03:55.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:55.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:55.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:55.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:55.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:55.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:55.496][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.DEBUG[2023-10-14 11:03:55.500][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:03:55.501][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:03:55.503][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.TRACE[2023-10-14 11:03:56.062][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747).
biodb.DEBUG[2023-10-14 11:03:56.694][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:03:56.697][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.content"
biodb.TRACE[2023-10-14 11:03:56.701][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.request"
biodb.TRACE[2023-10-14 11:03:56.704][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml"
biodb.DEBUG[2023-10-14 11:03:56.705][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:03:56.707][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:03:56.708][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:03:56.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:03:56.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:56.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:56.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:56.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:56.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:56.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:03:56.725][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:56.726][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:56.727][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:56.728][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:56.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:56.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:56.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:56.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:56.734][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:56.736][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:56.737][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:56.738][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:56.739][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:56.740][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:56.742][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:56.743][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:56.744][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:56.746][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:56.747][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:56.748][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:56.749][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:56.750][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:56.751][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:56.753][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:56.754][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:56.755][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:56.756][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:56.757][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:56.759][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:03:56.760][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:56.761][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:56.762][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:56.763][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:56.765][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:56.766][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:56.767][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:56.768][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:56.770][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:56.771][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:56.772][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:56.773][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:56.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:56.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:56.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:56.778][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:03:56.779][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:56.780][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:56.782][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:56.783][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:03:56.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:56.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:56.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:56.788][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:56.789][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:56.790][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:56.791][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:56.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:56.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:56.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:56.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:56.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:56.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:56.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:56.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:56.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:56.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:56.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:56.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:56.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:56.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:56.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:56.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:56.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:56.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:56.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:56.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:56.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:56.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:56.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:56.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:56.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:56.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:56.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:56.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:56.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:56.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:56.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:56.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:56.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:56.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:56.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:56.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:56.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:56.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:56.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:56.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:03:56.866][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2023-10-14 11:03:56.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:56.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:56.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:56.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:56.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:56.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:56.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:56.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:56.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:56.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:56.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:56.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:56.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:56.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:56.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:56.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:56.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:56.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:56.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:56.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:03:56.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:03:56.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:56.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:56.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:56.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:56.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:56.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:56.905][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2023-10-14 11:03:56.906][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:03:56.908][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2023-10-14 11:03:56.909][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:03:56.911][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:03:56.912][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:03:56.913][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:03:56.914][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:03:56.916][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:03:56.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:03:56.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:56.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:56.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:56.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:56.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:56.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:56.933][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.DEBUG[2023-10-14 11:03:56.936][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:03:56.937][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:03:56.939][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.TRACE[2023-10-14 11:03:57.576][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285).
biodb.DEBUG[2023-10-14 11:03:58.088][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:03:58.091][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.content"
biodb.TRACE[2023-10-14 11:03:58.095][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.request"
biodb.TRACE[2023-10-14 11:03:58.098][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml"
biodb.DEBUG[2023-10-14 11:03:58.100][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:03:58.101][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:03:58.102][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:03:58.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:03:58.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:58.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:58.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:58.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:58.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:58.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:03:58.120][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:58.122][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:58.123][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:58.124][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:58.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:58.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:58.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:58.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:58.130][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:58.131][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:58.133][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:58.134][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:58.135][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:58.136][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:58.137][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:58.139][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:58.140][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:58.141][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:58.143][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:58.144][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:58.145][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:58.146][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:58.147][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:58.149][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:58.150][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:58.151][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:58.152][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:58.153][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:58.155][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:03:58.156][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:58.157][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:58.159][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:58.160][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:58.161][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:58.162][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:58.164][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:58.165][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:58.166][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:58.167][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:58.168][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:58.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:58.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:58.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:58.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:58.176][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:03:58.177][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:58.179][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:58.180][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:58.181][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:03:58.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:58.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:58.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:58.186][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:58.187][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:58.189][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:58.190][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:58.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:58.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:58.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:58.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:58.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:58.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:58.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:58.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:58.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:58.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:58.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:58.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:58.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:58.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:58.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:58.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:58.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:58.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:58.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:58.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:58.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:58.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:58.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:58.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:58.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:58.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:58.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:58.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:58.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:58.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:58.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:58.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:58.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:58.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:58.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:58.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:58.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:58.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:58.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:58.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:03:58.248][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2023-10-14 11:03:58.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:58.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:58.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:58.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:58.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:58.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:58.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:58.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:58.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:58.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:58.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:58.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:58.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:58.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:58.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:58.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:58.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:58.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:58.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:58.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:03:58.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:03:58.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:58.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:58.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:58.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:58.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:58.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:58.287][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2023-10-14 11:03:58.288][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:03:58.290][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2023-10-14 11:03:58.292][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:03:58.293][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:03:58.294][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:03:58.295][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:03:58.297][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:03:58.298][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:03:58.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:03:58.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:58.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:58.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:58.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:58.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:58.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:58.315][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.DEBUG[2023-10-14 11:03:58.318][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:03:58.319][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:03:58.321][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.TRACE[2023-10-14 11:03:59.013][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174).
biodb.DEBUG[2023-10-14 11:03:59.632][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:03:59.634][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.content"
biodb.TRACE[2023-10-14 11:03:59.639][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.request"
biodb.TRACE[2023-10-14 11:03:59.642][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml"
biodb.DEBUG[2023-10-14 11:03:59.644][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:03:59.645][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:03:59.646][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:03:59.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:03:59.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:59.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:59.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:59.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:59.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:59.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:03:59.663][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:59.664][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:59.666][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:59.667][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:59.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:59.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:59.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:59.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:59.673][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:03:59.674][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:03:59.675][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:59.676][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:59.678][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:03:59.679][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:03:59.680][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:59.681][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:59.683][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:03:59.684][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:03:59.685][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:59.687][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:59.688][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:03:59.689][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:03:59.690][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:59.691][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:59.693][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:59.694][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:03:59.695][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:59.696][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:59.698][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:03:59.699][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:59.700][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:59.701][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:59.703][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:59.704][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:03:59.705][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:59.706][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:59.707][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:59.709][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:59.710][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:59.711][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:59.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:03:59.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:03:59.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:59.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:59.718][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:03:59.723][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:59.727][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:59.729][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:59.730][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:03:59.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:03:59.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:59.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:59.735][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:03:59.736][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:03:59.737][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:59.738][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:59.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:59.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:59.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:59.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:59.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:59.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:59.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:59.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:59.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:59.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:59.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:59.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:59.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:03:59.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:03:59.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:59.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:59.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:59.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:59.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:59.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:59.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:59.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:59.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:59.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:59.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:59.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:59.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:59.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:59.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:59.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:59.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:59.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:59.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:59.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:59.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:59.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:59.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:03:59.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:03:59.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:59.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:03:59.787][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2023-10-14 11:03:59.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:59.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:59.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:59.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:59.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:59.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:59.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:59.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:59.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:59.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:59.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:59.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:59.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:59.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:59.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:59.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:03:59.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:59.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:03:59.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:03:59.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:03:59.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:03:59.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:59.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:59.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:59.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:59.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:59.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:59.826][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2023-10-14 11:03:59.827][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:03:59.829][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2023-10-14 11:03:59.830][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:03:59.832][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:03:59.833][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:03:59.834][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:03:59.835][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:03:59.836][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:03:59.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:03:59.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:03:59.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:03:59.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:03:59.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:03:59.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:03:59.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:03:59.853][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.DEBUG[2023-10-14 11:03:59.857][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:03:59.858][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:03:59.859][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.TRACE[2023-10-14 11:04:00.632][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441).
biodb.DEBUG[2023-10-14 11:04:01.306][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:01.308][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.content"
biodb.TRACE[2023-10-14 11:04:01.354][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.request"
biodb.TRACE[2023-10-14 11:04:01.357][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml"
biodb.DEBUG[2023-10-14 11:04:01.359][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:04:01.360][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:04:01.361][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:04:01.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:01.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:01.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:01.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:01.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:01.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:01.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:01.378][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:01.380][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:01.381][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.382][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:01.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:01.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.388][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:01.389][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:01.390][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.391][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.393][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:01.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:01.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.398][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:01.399][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:01.400][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.401][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.403][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:01.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:01.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.415][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:01.417][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:01.418][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.419][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:01.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:01.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.425][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:01.426][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:01.427][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.428][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:01.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:01.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.435][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:01.436][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:01.437][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.438][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.440][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:01.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:01.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.444][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:01.446][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:01.447][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.448][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.449][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:01.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:01.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.454][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:01.455][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:01.456][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.457][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:01.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:01.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.464][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:01.465][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:01.466][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.467][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.469][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:01.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:01.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.474][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:01.475][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:01.476][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.477][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.479][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:01.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:01.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.483][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:01.485][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:01.486][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.487][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.488][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:01.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:01.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:01.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:01.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:01.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:01.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:01.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:01.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:01.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:01.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:01.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:01.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:01.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:01.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:01.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:01.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:01.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:01.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:01.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:01.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:01.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:01.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:01.540][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2023-10-14 11:04:01.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:01.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:01.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:01.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:01.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:01.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:01.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:01.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:01.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:01.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:01.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:01.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:01.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:01.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:01.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:01.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:01.569][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2023-10-14 11:04:01.570][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:04:01.572][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2023-10-14 11:04:01.573][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:04:01.575][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:04:01.576][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:04:01.577][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:04:01.578][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:04:01.579][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:04:01.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:01.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:01.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:01.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:01.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:01.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:01.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:01.597][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.DEBUG[2023-10-14 11:04:01.600][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:01.601][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:01.608][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.TRACE[2023-10-14 11:04:02.285][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442).
biodb.DEBUG[2023-10-14 11:04:02.932][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:02.935][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.content"
biodb.TRACE[2023-10-14 11:04:02.967][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.request"
biodb.TRACE[2023-10-14 11:04:02.970][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml"
biodb.DEBUG[2023-10-14 11:04:02.971][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:04:02.973][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:04:02.974][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:04:02.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:02.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:02.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:02.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:02.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:02.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:02.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:02.991][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:02.992][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:02.993][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:02.994][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:02.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:02.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:02.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:02.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.000][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:03.001][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:03.002][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.004][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.005][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:03.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:03.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.010][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:03.011][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:03.012][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.013][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.015][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:03.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:03.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.019][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:03.021][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:03.022][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.023][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:03.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:03.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.029][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:03.030][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:03.031][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.032][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.034][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:03.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:03.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.039][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:03.040][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:03.041][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.042][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.043][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:03.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:03.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.048][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:03.049][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:03.050][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.052][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.053][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:03.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:03.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.058][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:03.059][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:03.060][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.061][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:03.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:03.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.067][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:03.068][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:03.069][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.071][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.072][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:03.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:03.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.077][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:03.078][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:03.079][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.080][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.082][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:03.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:03.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.086][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:03.088][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:03.089][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.090][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.091][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:03.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:03.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:03.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:03.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:03.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:03.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:03.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:03.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:03.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:03.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:03.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:03.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:03.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:03.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:03.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:03.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:03.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:03.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:03.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:03.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:03.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:03.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:03.143][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2023-10-14 11:04:03.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:03.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:03.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:03.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:03.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:03.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:03.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:03.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:03.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:03.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:03.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:03.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:03.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:03.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:03.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:03.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:03.179][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2023-10-14 11:04:03.180][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:04:03.182][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2023-10-14 11:04:03.183][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:04:03.185][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:04:03.186][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:04:03.187][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:04:03.188][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:04:03.189][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:04:03.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:03.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:03.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:03.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:03.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:03.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:03.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:03.206][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.DEBUG[2023-10-14 11:04:03.209][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:03.210][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:03.212][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.TRACE[2023-10-14 11:04:03.878][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310).
biodb.DEBUG[2023-10-14 11:04:04.497][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:04.499][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.content"
biodb.TRACE[2023-10-14 11:04:04.503][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.request"
biodb.TRACE[2023-10-14 11:04:04.506][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml"
biodb.DEBUG[2023-10-14 11:04:04.508][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:04:04.509][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:04:04.511][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:04:04.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:04.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:04.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:04.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:04.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:04.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:04.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:04.527][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:04.528][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:04.530][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.531][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:04.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:04.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.539][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:04.540][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:04.541][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.543][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.545][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:04.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:04.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.552][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:04.553][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:04.554][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.555][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.557][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:04.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:04.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.563][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:04.565][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:04.566][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.567][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.569][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:04.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:04.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.574][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:04.575][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:04.576][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.577][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:04.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:04.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.587][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:04.589][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:04.591][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.593][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.596][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:04.598][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:04.599][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.601][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.602][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:04.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:04.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.608][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:04.611][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:04.612][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.614][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:04.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:04.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.620][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:04.621][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:04.622][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.623][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.625][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:04.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:04.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.630][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:04.631][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:04.632][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.633][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.635][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:04.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:04.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.640][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:04.641][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:04.642][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.643][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:04.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:04.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:04.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:04.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:04.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:04.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:04.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:04.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:04.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:04.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:04.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:04.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:04.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:04.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:04.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:04.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:04.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:04.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:04.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:04.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:04.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:04.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:04.705][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2023-10-14 11:04:04.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:04.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:04.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:04.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:04.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:04.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:04.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:04.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:04.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:04.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:04.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:04.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:04.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:04.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:04.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:04.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:04.734][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2023-10-14 11:04:04.735][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:04:04.737][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2023-10-14 11:04:04.738][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:04:04.740][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:04:04.741][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:04:04.742][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:04:04.743][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:04:04.744][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:04:04.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:04.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:04.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:04.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:04.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:04.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:04.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:04.761][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.DEBUG[2023-10-14 11:04:04.764][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:04.765][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:04.767][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.TRACE[2023-10-14 11:04:05.533][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216).
biodb.DEBUG[2023-10-14 11:04:06.182][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:06.187][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.content"
biodb.TRACE[2023-10-14 11:04:06.243][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.request"
biodb.TRACE[2023-10-14 11:04:06.247][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml"
biodb.DEBUG[2023-10-14 11:04:06.249][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:04:06.250][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:04:06.252][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:04:06.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:06.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:06.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:06.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:06.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:06.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:06.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:06.270][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:06.271][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:06.272][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.274][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:06.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:06.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.280][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:06.281][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:06.283][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.284][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.285][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:06.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:06.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.290][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:06.292][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:06.293][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.294][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.295][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:06.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:06.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.301][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:06.302][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:06.303][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.304][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.306][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:06.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:06.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.311][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:06.312][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:06.313][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.314][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:06.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:06.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.328][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:06.330][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:06.331][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.332][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.333][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:06.335][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:06.336][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.337][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.338][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:06.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:06.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.343][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:06.345][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:06.346][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.347][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:06.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:06.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.353][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:06.354][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:06.356][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.357][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.358][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:06.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:06.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.363][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:06.365][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:06.366][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.367][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.368][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:06.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:06.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.373][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:06.374][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:06.375][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.377][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.378][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:06.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:06.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:06.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:06.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:06.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:06.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:06.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:06.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:06.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:06.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:06.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:06.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:06.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:06.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:06.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:06.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:06.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:06.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:06.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:06.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:06.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:06.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:06.431][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2023-10-14 11:04:06.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:06.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:06.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:06.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:06.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:06.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:06.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:06.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:06.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:06.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:06.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:06.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:06.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:06.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:06.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:06.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:06.460][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2023-10-14 11:04:06.461][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:04:06.463][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2023-10-14 11:04:06.464][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:04:06.466][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:04:06.467][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:04:06.468][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:04:06.469][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:04:06.470][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:04:06.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:06.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:06.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:06.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:06.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:06.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:06.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:06.488][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.DEBUG[2023-10-14 11:04:06.491][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:06.492][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:06.494][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.TRACE[2023-10-14 11:04:07.135][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860).
biodb.DEBUG[2023-10-14 11:04:07.764][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:07.767][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.content"
biodb.TRACE[2023-10-14 11:04:07.771][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.request"
biodb.TRACE[2023-10-14 11:04:07.774][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml"
biodb.DEBUG[2023-10-14 11:04:07.776][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:04:07.778][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:04:07.779][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:04:07.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:07.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:07.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:07.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:07.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:07.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:07.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:07.804][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:07.805][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:07.806][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.807][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:07.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:07.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.813][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:07.815][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:07.816][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.818][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.819][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:07.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:07.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.824][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:07.826][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:07.827][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.828][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.829][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:07.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:07.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.835][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:07.836][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:07.837][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.838][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:07.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:07.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.845][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:07.846][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:07.847][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.848][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:07.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:07.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.855][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:07.856][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:07.857][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.858][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.860][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:07.861][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:07.862][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.863][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.865][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:07.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:07.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.870][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:07.871][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:07.873][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.874][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:07.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:07.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.880][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:07.881][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:07.882][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.884][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.885][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:07.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:07.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.890][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:07.891][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:07.892][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.893][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.895][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:07.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:07.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.900][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:07.901][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:07.902][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.903][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.905][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:07.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:07.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:07.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:07.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:07.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:07.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:07.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:07.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:07.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:07.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:07.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:07.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:07.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:07.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:07.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:07.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:07.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:07.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:07.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:07.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:07.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:07.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:07.956][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2023-10-14 11:04:07.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:07.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:07.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:07.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:07.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:07.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:07.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:07.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:07.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:07.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:07.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:07.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:07.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:07.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:07.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:07.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:07.985][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2023-10-14 11:04:07.986][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:04:07.993][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2023-10-14 11:04:07.995][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:04:07.996][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:04:07.997][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:04:07.998][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:04:08.000][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:04:08.001][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:04:08.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:08.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:08.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:08.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:08.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:08.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:08.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:08.017][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.DEBUG[2023-10-14 11:04:08.021][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:08.022][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:08.024][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.TRACE[2023-10-14 11:04:08.588][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861).
biodb.DEBUG[2023-10-14 11:04:09.193][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:09.196][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.content"
biodb.TRACE[2023-10-14 11:04:09.200][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.request"
biodb.TRACE[2023-10-14 11:04:09.203][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml"
biodb.DEBUG[2023-10-14 11:04:09.205][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:04:09.207][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:04:09.208][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:04:09.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:09.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:09.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:09.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:09.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:09.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:09.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:09.226][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:09.227][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:09.228][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.229][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:09.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:09.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.236][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:09.237][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:09.238][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.239][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.241][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:09.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:09.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.245][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:09.247][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:09.248][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.249][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.250][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:09.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:09.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.255][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:09.256][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:09.257][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.259][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.260][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:09.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:09.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.265][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:09.266][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:09.267][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.269][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.270][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:09.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:09.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.275][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:09.276][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:09.277][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.278][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.280][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:09.281][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:09.282][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.284][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.285][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:09.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:09.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.290][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:09.291][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:09.292][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.293][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:09.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:09.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.300][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:09.301][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:09.302][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.303][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.305][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:09.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:09.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.310][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:09.311][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:09.312][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.314][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.315][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:09.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:09.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.320][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:09.321][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:09.322][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.324][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.325][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:09.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:09.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:09.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:09.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:09.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:09.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:09.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:09.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:09.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:09.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:09.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:09.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:09.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:09.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:09.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:09.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:09.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:09.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:09.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:09.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:09.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:09.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:09.386][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2023-10-14 11:04:09.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:09.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:09.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:09.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:09.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:09.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:09.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:09.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:09.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:09.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:09.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:09.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:09.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:09.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:09.413][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:09.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:09.415][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2023-10-14 11:04:09.417][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:04:09.418][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2023-10-14 11:04:09.420][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:04:09.421][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:04:09.422][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:04:09.424][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:04:09.425][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:04:09.426][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:04:09.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:09.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:09.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:09.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:09.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:09.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:09.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:09.443][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.DEBUG[2023-10-14 11:04:09.446][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:09.447][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:09.449][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.TRACE[2023-10-14 11:04:10.094][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662).
biodb.DEBUG[2023-10-14 11:04:10.722][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:10.724][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.content"
biodb.TRACE[2023-10-14 11:04:10.728][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.request"
biodb.TRACE[2023-10-14 11:04:10.732][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml"
biodb.DEBUG[2023-10-14 11:04:10.733][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:04:10.735][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:04:10.736][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:04:10.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:10.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:10.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:10.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:10.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:10.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:10.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:10.753][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:10.754][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:10.755][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.756][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:10.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:10.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.762][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:10.764][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:10.765][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.766][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.767][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:10.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:10.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.772][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:10.773][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:10.774][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.776][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.777][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:10.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:10.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.782][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:10.783][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:10.784][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.785][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:10.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:10.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.791][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:10.793][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:10.794][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.795][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:10.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:10.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.801][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:10.802][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:10.803][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.805][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.806][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:10.807][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:10.808][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.810][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.811][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:10.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:10.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.816][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:10.817][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:10.818][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.819][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:10.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:10.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.834][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:10.835][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:10.836][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.837][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.839][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:10.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:10.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.844][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:10.845][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:10.846][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.847][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.848][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:10.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:10.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.853][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:10.855][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:10.856][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.857][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.858][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:10.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:10.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:10.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:10.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:10.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:10.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:10.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:10.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:10.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:10.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:10.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:10.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:10.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:10.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:10.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:10.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:10.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:10.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:10.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:10.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:10.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:10.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:10.910][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2023-10-14 11:04:10.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:10.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:10.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:10.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:10.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:10.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:10.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:10.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:10.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:10.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:10.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:10.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:10.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:10.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:10.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:10.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:10.939][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2023-10-14 11:04:10.940][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:04:10.942][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2023-10-14 11:04:10.944][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:04:10.945][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:04:10.946][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:04:10.948][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:04:10.949][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:04:10.950][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:04:10.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:10.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:10.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:10.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:10.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:10.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:10.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:10.967][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.DEBUG[2023-10-14 11:04:10.971][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:10.972][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:10.974][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.TRACE[2023-10-14 11:04:11.572][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084).
biodb.DEBUG[2023-10-14 11:04:12.250][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:12.252][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.content"
biodb.TRACE[2023-10-14 11:04:12.256][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.request"
biodb.TRACE[2023-10-14 11:04:12.259][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml"
biodb.DEBUG[2023-10-14 11:04:12.261][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:04:12.263][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:04:12.264][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:04:12.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:12.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:12.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:12.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:12.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:12.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:12.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:12.281][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:12.282][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:12.284][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.285][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:12.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:12.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:12.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:12.291][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:12.292][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:12.293][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.294][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:12.303][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:12.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:12.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:12.308][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:12.310][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:12.311][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.312][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:12.313][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:12.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:12.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:12.318][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:12.319][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:12.320][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.321][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:12.323][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:12.324][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:12.325][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.326][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:12.327][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:12.329][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:12.330][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.331][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:12.332][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:12.333][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:12.335][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.336][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:12.337][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:12.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:12.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:12.342][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:12.343][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:12.344][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.345][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:12.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:12.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:12.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:12.351][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:12.353][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:12.354][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.355][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:12.356][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:12.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:12.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:12.361][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:12.362][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:12.364][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.365][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:12.366][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:12.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:12.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:12.371][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:12.372][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:12.373][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.374][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:12.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:12.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:12.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:12.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:12.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:12.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:12.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:12.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:12.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:12.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:12.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:12.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:12.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:12.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:12.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:12.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:12.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:12.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:12.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:12.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:12.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:12.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:12.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:12.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:12.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:12.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:12.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:12.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:12.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:12.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:12.422][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2023-10-14 11:04:12.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:12.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:12.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:12.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:12.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:12.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:12.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:12.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:12.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:12.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:12.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:12.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:12.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:12.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:12.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:12.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:12.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:12.451][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2023-10-14 11:04:12.452][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:04:12.454][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2023-10-14 11:04:12.456][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:04:12.457][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:04:12.458][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:04:12.459][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:04:12.460][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:04:12.462][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:04:12.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:12.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:12.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:12.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:12.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:12.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:12.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:12.479][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.DEBUG[2023-10-14 11:04:12.482][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:12.483][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:12.485][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.TRACE[2023-10-14 11:04:13.130][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086).
biodb.DEBUG[2023-10-14 11:04:13.694][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:13.697][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.content"
biodb.TRACE[2023-10-14 11:04:13.708][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.request"
biodb.TRACE[2023-10-14 11:04:13.711][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml"
biodb.DEBUG[2023-10-14 11:04:13.713][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:04:13.714][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:04:13.715][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:04:13.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:13.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:13.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:13.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:13.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:13.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:13.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:13.732][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:13.733][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:13.734][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.735][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:13.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:13.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:13.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:13.742][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:13.743][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:13.744][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.745][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:13.747][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:13.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:13.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:13.751][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:13.753][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:13.754][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.755][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:13.756][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:13.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:13.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:13.761][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:13.762][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:13.764][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.765][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:13.766][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:13.767][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:13.768][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.770][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:13.771][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:13.772][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:13.773][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.775][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:13.776][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:13.777][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:13.778][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.779][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:13.781][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:13.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:13.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:13.786][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:13.787][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:13.788][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.789][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:13.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:13.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:13.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:13.796][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:13.797][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:13.798][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.799][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:13.801][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:13.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:13.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:13.806][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:13.807][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:13.808][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.809][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:13.811][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:13.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:13.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:13.815][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:13.817][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:13.818][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.819][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:13.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:13.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:13.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:13.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:13.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:13.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:13.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:13.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:13.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:13.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:13.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:13.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:13.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:13.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:13.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:13.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:13.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:13.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:13.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:13.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:13.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:13.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:13.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:13.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:13.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:13.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:13.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:13.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:13.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:13.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:13.868][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2023-10-14 11:04:13.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:13.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:13.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:13.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:13.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:13.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:13.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:13.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:13.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:13.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:13.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:13.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:13.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:13.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:13.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:13.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:13.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:13.901][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2023-10-14 11:04:13.903][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:04:13.904][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2023-10-14 11:04:13.906][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:04:13.907][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:04:13.908][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:04:13.910][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:04:13.911][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:04:13.912][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:04:13.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:13.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:13.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:13.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:13.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:13.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:13.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:13.929][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.DEBUG[2023-10-14 11:04:13.932][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:13.934][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:13.935][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.TRACE[2023-10-14 11:04:14.598][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123).
biodb.DEBUG[2023-10-14 11:04:15.233][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:15.235][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.content"
biodb.TRACE[2023-10-14 11:04:15.239][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.request"
biodb.TRACE[2023-10-14 11:04:15.242][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml"
biodb.DEBUG[2023-10-14 11:04:15.244][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:04:15.245][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:04:15.247][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:04:15.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:15.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:15.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:15.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:15.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:15.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:15.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:15.264][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:15.265][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:15.266][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.267][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:15.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:15.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.274][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:15.275][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:15.276][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.277][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.279][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:15.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:15.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.283][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:15.285][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:15.286][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.287][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.288][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:15.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:15.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.293][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:15.295][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:15.296][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.297][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:15.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:15.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.303][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:15.304][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:15.306][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.307][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.308][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:15.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:15.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.313][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:15.314][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:15.315][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.316][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.318][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:15.319][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:15.320][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.321][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.323][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:15.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:15.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.328][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:15.329][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:15.330][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.331][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:15.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:15.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.338][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:15.339][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:15.340][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.341][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.343][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:15.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:15.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.348][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:15.349][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:15.350][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.352][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.353][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:15.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:15.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.358][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:15.359][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:15.361][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.362][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.363][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:15.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:15.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:15.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:15.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:15.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:15.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:15.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:15.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:15.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:15.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:15.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:15.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:15.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:15.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:15.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:15.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:15.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:15.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:15.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:15.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:15.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:15.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:15.427][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2023-10-14 11:04:15.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:15.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:15.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:15.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:15.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:15.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:15.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:15.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:15.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:15.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:15.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:15.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:15.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:15.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:15.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:15.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:15.458][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2023-10-14 11:04:15.460][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:04:15.462][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2023-10-14 11:04:15.464][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:04:15.465][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:04:15.466][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:04:15.468][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:04:15.469][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:04:15.470][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:04:15.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:15.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:15.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:15.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:15.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:15.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:15.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:15.487][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.DEBUG[2023-10-14 11:04:15.491][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:15.492][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:15.494][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.TRACE[2023-10-14 11:04:16.150][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117).
biodb.DEBUG[2023-10-14 11:04:16.801][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:16.803][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.content"
biodb.TRACE[2023-10-14 11:04:16.808][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.request"
biodb.TRACE[2023-10-14 11:04:16.811][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml"
biodb.DEBUG[2023-10-14 11:04:16.813][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:04:16.814][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:04:16.816][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:04:16.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:16.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:16.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:16.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:16.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:16.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:16.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:16.833][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:16.834][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:16.836][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.837][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:16.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:16.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.843][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:16.844][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:16.845][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.846][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.848][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:16.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:16.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.853][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:16.854][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:16.855][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.856][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.858][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:16.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:16.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.863][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:16.864][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:16.865][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.866][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:16.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:16.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.873][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:16.874][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:16.875][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.876][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:16.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:16.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.882][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:16.884][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:16.885][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.886][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.887][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:16.889][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:16.890][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.891][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.892][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:16.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:16.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.897][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:16.906][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:16.907][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.909][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:16.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:16.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.915][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:16.916][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:16.917][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.918][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.920][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:16.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:16.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.925][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:16.926][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:16.927][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.928][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.930][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:16.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:16.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.935][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:16.936][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:16.937][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.938][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.940][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:16.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:16.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:16.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:16.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:16.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:16.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:16.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:16.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:16.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:16.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:16.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:16.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:16.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:16.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:16.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:16.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:16.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:16.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:16.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:16.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:16.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:16.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:16.993][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2023-10-14 11:04:16.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:16.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:16.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:16.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:16.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:17.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:17.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:17.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:17.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:17.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:17.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:17.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:17.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:17.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:17.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:17.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:17.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:17.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:17.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:17.023][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2023-10-14 11:04:17.024][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:04:17.026][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2023-10-14 11:04:17.027][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:04:17.028][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:04:17.030][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:04:17.031][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:04:17.032][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:04:17.033][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:04:17.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:17.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:17.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:17.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:17.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:17.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:17.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:17.051][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.DEBUG[2023-10-14 11:04:17.054][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:17.055][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:17.057][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.TRACE[2023-10-14 11:04:17.764][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307).
biodb.DEBUG[2023-10-14 11:04:18.409][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:18.411][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.content"
biodb.TRACE[2023-10-14 11:04:18.415][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.request"
biodb.TRACE[2023-10-14 11:04:18.418][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml"
biodb.DEBUG[2023-10-14 11:04:18.420][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:04:18.422][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:04:18.423][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:04:18.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:18.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:18.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:18.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:18.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:18.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:18.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:18.440][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:18.441][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:18.442][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.443][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:18.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:18.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.457][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:18.459][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:18.460][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.461][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.462][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:18.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:18.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.467][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:18.468][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:18.469][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.471][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.472][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:18.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:18.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.477][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:18.478][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:18.479][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.480][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:18.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:18.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.486][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:18.488][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:18.489][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.490][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:18.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:18.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.496][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:18.497][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:18.499][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.500][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.501][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:18.502][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:18.503][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.505][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.506][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:18.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:18.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.511][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:18.512][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:18.513][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.514][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:18.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:18.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.521][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:18.522][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:18.523][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.524][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.526][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:18.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:18.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.531][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:18.532][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:18.533][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.534][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.535][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:18.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:18.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.540][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:18.542][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:18.543][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.544][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.545][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:18.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:18.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:18.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:18.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:18.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:18.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:18.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:18.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:18.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:18.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:18.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:18.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:18.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:18.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:18.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:18.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:18.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:18.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:18.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:18.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:18.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:18.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:18.597][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2023-10-14 11:04:18.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:18.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:18.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:18.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:18.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:18.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:18.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:18.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:18.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:18.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:18.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:18.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:18.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:18.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:18.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:18.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:18.627][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2023-10-14 11:04:18.628][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:04:18.630][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2023-10-14 11:04:18.631][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:04:18.633][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:04:18.634][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:04:18.635][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:04:18.636][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:04:18.637][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:04:18.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:18.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:18.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:18.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:18.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:18.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:18.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:18.659][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.DEBUG[2023-10-14 11:04:18.663][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:18.664][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:18.666][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.TRACE[2023-10-14 11:04:19.335][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803).
biodb.DEBUG[2023-10-14 11:04:19.981][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:19.984][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.content"
biodb.TRACE[2023-10-14 11:04:19.988][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.request"
biodb.TRACE[2023-10-14 11:04:19.991][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml"
biodb.DEBUG[2023-10-14 11:04:19.993][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:04:19.995][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:04:19.996][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:04:19.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:19.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:20.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:20.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:20.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:20.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:20.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:20.013][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:20.015][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:20.016][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.017][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:20.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:20.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.023][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:20.025][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:20.026][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.027][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.028][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:20.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:20.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.033][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:20.034][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:20.036][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.037][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.038][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:20.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:20.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.043][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:20.044][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:20.046][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.047][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:20.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:20.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.053][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:20.054][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:20.055][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.057][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.058][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:20.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:20.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.063][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:20.064][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:20.065][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.067][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.068][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:20.069][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:20.071][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.072][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.073][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:20.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:20.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.078][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:20.080][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:20.081][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.082][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:20.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:20.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.088][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:20.090][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:20.091][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.092][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.094][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:20.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:20.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.098][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:20.100][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:20.101][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.102][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.103][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:20.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:20.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.108][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:20.110][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:20.111][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.112][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.113][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:20.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:20.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:20.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:20.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:20.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:20.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:20.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:20.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:20.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:20.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:20.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:20.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:20.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:20.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:20.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:20.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:20.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:20.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:20.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:20.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:20.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:20.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:20.173][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2023-10-14 11:04:20.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:20.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:20.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:20.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:20.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:20.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:20.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:20.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:20.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:20.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:20.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:20.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:20.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:20.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:20.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:20.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:20.202][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2023-10-14 11:04:20.204][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:04:20.206][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2023-10-14 11:04:20.207][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:04:20.208][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:04:20.210][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:04:20.211][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:04:20.212][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:04:20.213][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:04:20.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:20.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:20.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:20.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:20.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:20.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:20.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:20.231][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.DEBUG[2023-10-14 11:04:20.234][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:20.235][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:20.237][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.TRACE[2023-10-14 11:04:20.899][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962).
biodb.DEBUG[2023-10-14 11:04:21.510][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:21.513][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.content"
biodb.TRACE[2023-10-14 11:04:21.557][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.request"
biodb.TRACE[2023-10-14 11:04:21.561][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml"
biodb.DEBUG[2023-10-14 11:04:21.563][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:04:21.565][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:04:21.566][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:04:21.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:21.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:21.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:21.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:21.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:21.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:21.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:21.584][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:21.585][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:21.586][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.588][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:21.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:21.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.594][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:21.595][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:21.596][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.597][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.599][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:21.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:21.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.604][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:21.605][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:21.606][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.607][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.609][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:21.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:21.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.614][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:21.615][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:21.616][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.617][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:21.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:21.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.624][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:21.625][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:21.626][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.627][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:21.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:21.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.634][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:21.635][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:21.637][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.638][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.639][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:21.641][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.642][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.643][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.644][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:21.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.649][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:21.651][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:21.652][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.653][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:21.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:21.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.659][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:21.661][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:21.662][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.663][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.665][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:21.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:21.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.678][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:21.679][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:21.680][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.681][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.683][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:21.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:21.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.688][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:21.689][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:21.690][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.691][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.693][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:21.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:21.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:21.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:21.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:21.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:21.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:21.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:21.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:21.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:21.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:21.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:21.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:21.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:21.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:21.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:21.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:21.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:21.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:21.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:21.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:21.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:21.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:21.745][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2023-10-14 11:04:21.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:21.790][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:04:21.794][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:04:21.796][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-10-14 11:04:21.798][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:04:21.799][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2023-10-14 11:04:21.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:21.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:21.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:21.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:21.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:21.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:21.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:21.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:21.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:21.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:21.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:21.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:21.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:21.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:21.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:21.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:21.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:21.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:21.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:21.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:21.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:21.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:21.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:21.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:21.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:21.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:21.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:21.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:21.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:21.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:21.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:21.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:21.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:21.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:21.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:21.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:21.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:21.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:21.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:21.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:21.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:21.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:21.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:21.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:21.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:21.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:21.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:21.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:21.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:21.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:21.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:22.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:22.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:22.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:22.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:22.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:22.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:22.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:22.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:22.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:22.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:22.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:22.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:22.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:22.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:22.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:22.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:22.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:22.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:22.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:22.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:22.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:22.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:22.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:22.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:22.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:22.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:22.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:22.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:22.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:22.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:22.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:22.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:22.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:22.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:22.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:22.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:22.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:22.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:22.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:22.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:22.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:22.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:22.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:22.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:22.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:22.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:22.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:22.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:22.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:22.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:22.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:22.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:22.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:22.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:22.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:22.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:22.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:22.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:22.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:22.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:22.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:22.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:22.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:22.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:22.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:22.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:22.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:22.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:22.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:22.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:22.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:22.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:22.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:22.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:22.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:22.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:22.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:22.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:22.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:22.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:22.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:22.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:22.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:22.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:22.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:22.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:22.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:22.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:22.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:22.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:22.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:22.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:22.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:22.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:22.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:22.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:22.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:22.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:22.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:22.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:22.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:22.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:22.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:22.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:22.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:22.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:22.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:22.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:22.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:22.440][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:04:22.444][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:22.445][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:22.448][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2023-10-14 11:04:23.134][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2023-10-14 11:04:23.797][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:23.800][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content"
biodb.TRACE[2023-10-14 11:04:23.805][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.request"
biodb.DEBUG[2023-10-14 11:04:23.810][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:04:23.815][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:23.816][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:23.818][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2023-10-14 11:04:24.459][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2023-10-14 11:04:25.143][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:25.146][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content"
biodb.TRACE[2023-10-14 11:04:25.151][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.request"
biodb.DEBUG[2023-10-14 11:04:25.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:25.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:25.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:25.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:25.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:25.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:25.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:25.168][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2023-10-14 11:04:25.170][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:04:25.171][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2023-10-14 11:04:25.173][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:04:25.174][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:04:25.175][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:04:25.177][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:04:25.178][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:04:25.179][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:04:25.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:25.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:25.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:25.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:25.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:25.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:25.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:25.196][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.DEBUG[2023-10-14 11:04:25.199][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:25.201][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:25.202][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.TRACE[2023-10-14 11:04:25.835][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648).
biodb.DEBUG[2023-10-14 11:04:26.532][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:26.534][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.content"
biodb.TRACE[2023-10-14 11:04:26.539][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.request"
biodb.TRACE[2023-10-14 11:04:26.542][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml"
biodb.DEBUG[2023-10-14 11:04:26.544][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:04:26.546][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:04:26.547][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:04:26.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:26.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:26.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:26.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:26.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:26.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:26.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:26.566][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:26.567][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:26.568][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.569][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:26.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:26.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.576][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:26.577][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:26.578][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.580][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.581][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:26.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:26.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.586][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:26.588][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:26.589][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.590][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.593][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:26.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:26.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.598][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:26.600][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:26.601][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.602][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:26.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:26.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.609][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:26.611][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:26.612][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.613][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:26.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:26.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.620][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:26.622][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:26.623][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.624][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.626][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:26.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:26.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.631][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:26.633][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:26.634][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.635][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.637][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:26.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:26.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.642][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:26.644][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:26.645][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.646][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:26.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:26.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.668][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:26.669][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:26.671][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.672][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.674][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:26.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:26.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.679][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:26.680][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:26.681][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.682][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.684][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:26.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:26.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.689][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:26.690][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:26.691][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.693][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.694][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:26.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:26.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:26.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:26.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:26.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:26.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:26.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:26.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:26.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:26.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:26.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:26.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:26.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:26.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:26.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:26.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:26.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:26.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:26.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:26.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:26.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:26.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:26.751][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2023-10-14 11:04:26.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:26.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:26.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:26.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:26.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:26.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:26.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:26.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:26.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:26.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:26.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:26.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:26.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:26.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:26.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:26.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:26.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:26.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:26.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:26.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:26.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:26.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:26.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:26.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:26.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:26.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:26.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:26.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:26.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:26.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:26.811][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2023-10-14 11:04:26.812][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:04:26.814][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2023-10-14 11:04:26.816][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:04:26.817][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:04:26.819][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:04:26.820][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:04:26.821][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:04:26.823][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:04:26.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:26.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:26.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:26.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:26.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:26.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:26.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:26.840][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.DEBUG[2023-10-14 11:04:26.844][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:26.845][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:26.847][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.TRACE[2023-10-14 11:04:27.543][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447).
biodb.DEBUG[2023-10-14 11:04:28.238][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:28.240][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.content"
biodb.TRACE[2023-10-14 11:04:28.244][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.request"
biodb.TRACE[2023-10-14 11:04:28.247][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml"
biodb.DEBUG[2023-10-14 11:04:28.249][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:04:28.250][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:04:28.252][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:04:28.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:28.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:28.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:28.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:28.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:28.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:28.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:28.277][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:28.279][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:28.280][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.281][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:28.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:28.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.288][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:28.289][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:28.290][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.291][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.292][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:28.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:28.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.297][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:28.299][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:28.300][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.301][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.303][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:28.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:28.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.308][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:28.309][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:28.310][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.311][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:28.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:28.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.317][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:28.319][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:28.320][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.321][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:28.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:28.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.327][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:28.328][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:28.329][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.331][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.332][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:28.333][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:28.334][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.336][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.337][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:28.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:28.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.342][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.343][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.344][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.346][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.352][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:28.353][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:28.354][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.355][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.357][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:28.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:28.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.362][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:28.363][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:28.364][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.365][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.367][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:28.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:28.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.372][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:28.373][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:28.374][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.375][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.377][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:28.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:28.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:28.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:28.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:28.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:28.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:28.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:28.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:28.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:28.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:28.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:28.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:28.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:28.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:28.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:28.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:28.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:28.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:28.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:28.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:28.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:28.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:28.431][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2023-10-14 11:04:28.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:28.482][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:04:28.486][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:04:28.488][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-10-14 11:04:28.489][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:04:28.491][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2023-10-14 11:04:28.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:28.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:28.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:28.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:28.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:28.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:28.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:28.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:28.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:28.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:28.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:28.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:28.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:28.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:28.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:28.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:28.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:28.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:28.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:28.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:28.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:28.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:28.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:28.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:28.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:28.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:28.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:28.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:28.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:28.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:28.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:28.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:28.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:28.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:28.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:28.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:28.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:28.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:28.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:28.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:28.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:28.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:28.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:28.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:28.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:28.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:28.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:28.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:28.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:28.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:28.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:28.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:28.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:28.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:28.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:28.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:28.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:28.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:28.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:28.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:28.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:28.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:28.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:28.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:28.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:28.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:28.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:28.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:28.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:28.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:28.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:28.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:28.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:28.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:28.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:28.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:28.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:28.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:28.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:28.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:28.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:28.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:28.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:28.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:28.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:28.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:28.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:28.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:28.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:28.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:28.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:28.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:28.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:28.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:28.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:28.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:28.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:28.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:28.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:28.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:28.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:28.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:28.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:28.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:28.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:28.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:28.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:28.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:28.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:28.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:28.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:28.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:28.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:28.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:28.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:28.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:28.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:28.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:28.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:28.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:28.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:28.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:28.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:28.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:28.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:28.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:28.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:28.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:28.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:28.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:28.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:28.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:28.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:28.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:28.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:28.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:28.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:28.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:28.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:29.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:29.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:29.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:29.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:29.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:29.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:29.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:29.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:29.075][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:04:29.079][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:04:29.081][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-10-14 11:04:29.082][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:04:29.084][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2023-10-14 11:04:29.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:29.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:29.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:29.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:29.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:29.100][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:29.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:29.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:29.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:29.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:29.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:29.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:29.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:29.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:29.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:29.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:29.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:29.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:29.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:29.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:29.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:29.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:29.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:29.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:29.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:29.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:29.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:29.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:29.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:29.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:29.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:29.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:29.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:29.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:29.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:29.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:29.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:29.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:29.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:29.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:29.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:29.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:29.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:29.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:29.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:29.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:29.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:29.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:29.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:29.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:29.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:29.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:29.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:29.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:29.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:29.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:29.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:29.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:29.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:29.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:29.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:29.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:29.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:29.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:29.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:29.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:29.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:29.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:29.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:29.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:29.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:29.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:29.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:29.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:29.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:29.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:29.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:29.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:29.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:29.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:29.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:29.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:29.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:29.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:29.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:29.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:29.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:29.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:29.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:29.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:29.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:29.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:29.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:29.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:29.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:29.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:29.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:29.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:29.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:29.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:29.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:29.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:29.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:29.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:29.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:29.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:29.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:29.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:29.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:29.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:29.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:29.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:29.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:29.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:29.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:29.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:29.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:29.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:29.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:29.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:29.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:29.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:29.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:29.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:29.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:29.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:29.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:29.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:29.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:29.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:29.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:29.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:29.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:29.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:29.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:29.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:29.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:29.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:29.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:29.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:29.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:29.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:29.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:29.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:29.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.677][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-10-14 11:04:29.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-10-14 11:04:29.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-10-14 11:04:29.694][biodb::testThat]
biodb.INFO [2023-10-14 11:04:29.696][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2023-10-14 11:04:29.697][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:04:29.698][biodb::testThat]
biodb.TRACE[2023-10-14 11:04:29.702][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-10-14 11:04:29.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-10-14 11:04:29.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.707][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-10-14 11:04:29.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-10-14 11:04:29.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.711][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-10-14 11:04:29.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-10-14 11:04:29.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:29.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:29.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:29.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:29.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:29.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:29.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:29.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:29.793][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:04:29.797][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:04:29.799][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2023-10-14 11:04:29.801][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:04:29.802][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2023-10-14 11:04:29.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:29.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:29.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:29.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:29.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:29.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:29.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:29.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:29.841][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:04:29.846][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:04:29.848][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2023-10-14 11:04:29.849][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:04:29.851][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2023-10-14 11:04:29.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:29.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:29.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:29.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:29.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:29.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:29.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:29.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:29.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:29.885][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:04:29.889][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:04:29.891][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2023-10-14 11:04:29.892][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:04:29.894][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2023-10-14 11:04:29.897][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:04:29.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:29.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:29.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:29.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:29.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:29.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:29.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:29.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:29.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:29.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:29.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:29.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.922][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:04:29.923][private$selectFields]
biodb.TRACE[2023-10-14 11:04:29.924][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:04:29.926][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:04:29.927][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:04:29.928][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:29.929][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:29.930][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.931][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.933][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:29.934][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:29.935][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.936][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.937][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:04:29.939][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:04:29.940][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:29.941][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:29.942][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.943][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.944][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:04:29.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:29.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:29.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:29.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:29.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:29.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:29.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.972][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2023-10-14 11:04:29.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:29.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:29.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:29.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:29.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:29.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:29.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:29.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:29.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:29.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:29.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:29.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:29.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:29.997][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:04:29.998][private$selectFields]
biodb.TRACE[2023-10-14 11:04:29.999][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:04:30.000][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:04:30.002][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:04:30.003][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:30.004][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:30.005][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:30.006][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:30.008][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:30.009][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:30.010][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:30.011][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:30.012][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:04:30.014][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:04:30.015][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:30.016][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:30.017][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:30.018][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:30.020][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:04:30.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:30.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:30.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:30.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:30.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:30.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:30.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:30.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:30.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:30.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:30.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:30.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:30.041][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-10-14 11:04:30.042][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:04:30.044][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:04:30.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:30.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:30.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:30.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:30.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:30.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:30.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:30.063][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:04:30.067][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:30.068][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:30.070][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2023-10-14 11:04:30.720][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2023-10-14 11:04:31.413][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:31.416][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content"
biodb.TRACE[2023-10-14 11:04:31.422][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.request"
biodb.DEBUG[2023-10-14 11:04:31.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:31.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:31.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:31.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:31.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:31.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:31.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:31.441][private$loadEntries] Creating entries from ids [1]: "113227".
biodb.DEBUG[2023-10-14 11:04:31.442][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:04:31.444][cch$loadFileContent] Trying to load 1 files from cache: [1]: "113227".
biodb.TRACE[2023-10-14 11:04:31.445][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:04:31.447][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:04:31.448][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:04:31.449][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:04:31.451][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:04:31.452][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:04:31.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:31.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:31.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:31.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:31.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:31.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:31.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:31.469][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.DEBUG[2023-10-14 11:04:31.472][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:31.473][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:31.475][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.TRACE[2023-10-14 11:04:32.121][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227).
biodb.DEBUG[2023-10-14 11:04:32.732][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:32.734][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.content"
biodb.TRACE[2023-10-14 11:04:32.778][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.request"
biodb.TRACE[2023-10-14 11:04:32.782][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/113227.xml"
biodb.DEBUG[2023-10-14 11:04:32.784][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:04:32.785][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:04:32.787][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:04:32.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:32.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:32.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:32.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:32.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:32.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:32.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:32.804][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:32.805][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:32.806][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.808][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:32.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:32.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.814][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:32.815][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:32.816][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.817][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.819][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:32.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:32.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.824][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:32.825][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:32.826][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.827][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.829][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:32.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:32.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.834][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:32.835][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:32.836][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.838][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:32.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:32.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.844][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:32.845][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:32.846][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.847][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:32.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:32.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.854][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:32.855][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:32.856][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.858][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.859][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:32.860][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:32.861][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.868][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.875][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:32.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:32.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.880][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:32.881][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:32.883][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.884][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:32.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:32.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.890][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:32.891][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:32.892][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.893][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.895][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:32.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:32.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.900][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:32.901][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:32.902][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.903][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.905][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:32.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:32.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.909][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:32.911][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:32.912][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.913][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.914][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:32.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:32.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:32.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:32.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:32.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:32.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:32.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:32.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:32.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:32.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:32.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:32.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:32.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:32.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:32.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:32.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:32.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:32.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:32.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:32.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:32.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:32.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:32.967][self$createEntryFromContent] Accession numbers: 113227.
biodb.TRACE[2023-10-14 11:04:32.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:32.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:32.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:32.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:32.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:32.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:32.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:32.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:32.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:32.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:32.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:32.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:32.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:32.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:32.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:32.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:32.998][private$loadEntries] Creating entries from ids [1]: "169712".
biodb.DEBUG[2023-10-14 11:04:32.999][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:04:33.001][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169712".
biodb.TRACE[2023-10-14 11:04:33.003][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:04:33.004][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:04:33.005][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:04:33.007][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:04:33.008][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:04:33.009][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:04:33.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:33.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:33.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:33.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:33.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:33.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:33.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:33.027][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.DEBUG[2023-10-14 11:04:33.030][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:33.031][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:33.033][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.TRACE[2023-10-14 11:04:33.703][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712).
biodb.DEBUG[2023-10-14 11:04:34.313][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:34.315][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.content"
biodb.TRACE[2023-10-14 11:04:34.319][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.request"
biodb.TRACE[2023-10-14 11:04:34.323][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169712.xml"
biodb.DEBUG[2023-10-14 11:04:34.325][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:04:34.326][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:04:34.328][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:04:34.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:34.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:34.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:34.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:34.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:34.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:34.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:34.353][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:34.355][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:34.356][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.357][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:34.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:34.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.363][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:34.364][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:34.365][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.367][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.368][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:34.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:34.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.373][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:34.374][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:34.375][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.376][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.378][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:34.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:34.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.383][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:34.384][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:34.385][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.386][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.388][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:34.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:34.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.393][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:34.394][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:34.395][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.396][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:34.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:34.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.402][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:34.404][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:34.405][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.406][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.407][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:34.409][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:34.410][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.411][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.412][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:34.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:34.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.417][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:34.419][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:34.420][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.421][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:34.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:34.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.427][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:34.428][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:34.430][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.431][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.432][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:34.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:34.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.437][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:34.438][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:34.439][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.441][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.442][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:34.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:34.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.447][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:34.448][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:34.449][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.450][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.452][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:34.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:34.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:34.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:34.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:34.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:34.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:34.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:34.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:34.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:34.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:34.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:34.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:34.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:34.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:34.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:34.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:34.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:34.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:34.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:34.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:34.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:34.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:34.505][self$createEntryFromContent] Accession numbers: 169712.
biodb.TRACE[2023-10-14 11:04:34.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:34.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:34.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:34.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:34.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:34.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:34.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:34.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:34.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:34.523][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:04:34.527][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:34.528][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:34.530][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2023-10-14 11:04:35.243][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2023-10-14 11:04:35.892][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:35.894][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content"
biodb.TRACE[2023-10-14 11:04:35.907][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.request"
biodb.DEBUG[2023-10-14 11:04:35.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:35.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:35.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:35.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:35.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:35.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:35.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:35.926][private$loadEntries] Creating entries from ids [1]: "4781".
biodb.DEBUG[2023-10-14 11:04:35.927][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:04:35.929][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4781".
biodb.TRACE[2023-10-14 11:04:35.931][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:04:35.932][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:04:35.933][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:04:35.934][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:04:35.936][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:04:35.937][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:04:35.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:35.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:35.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:35.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:35.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:35.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:35.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:35.954][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.DEBUG[2023-10-14 11:04:35.958][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:35.959][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:35.961][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.TRACE[2023-10-14 11:04:36.597][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781).
biodb.DEBUG[2023-10-14 11:04:37.419][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:37.421][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.content"
biodb.TRACE[2023-10-14 11:04:37.426][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.request"
biodb.TRACE[2023-10-14 11:04:37.429][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4781.xml"
biodb.DEBUG[2023-10-14 11:04:37.431][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:04:37.432][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:04:37.434][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:04:37.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:37.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:37.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:37.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:37.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:37.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:37.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:37.451][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:37.452][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:37.453][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.454][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:37.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:37.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.460][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:37.462][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:37.463][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.464][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.465][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:37.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:37.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.470][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:37.472][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:37.473][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.474][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.476][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:37.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:37.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.480][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:37.482][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:37.483][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.484][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:37.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:37.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.490][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:37.491][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:37.493][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.494][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.495][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:37.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:37.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.500][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:37.501][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:37.502][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.504][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.505][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:37.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:37.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.510][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:37.511][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:37.512][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.514][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.515][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:37.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:37.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.520][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:37.521][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:37.522][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.524][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:37.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:37.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.530][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:37.531][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:37.532][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.533][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.535][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:37.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:37.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.540][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:37.541][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:37.542][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.544][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.545][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:37.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:37.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.550][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:37.551][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:37.552][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.562][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.563][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:37.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:37.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:37.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:37.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:37.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:37.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:37.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:37.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:37.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:37.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:37.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:37.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:37.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:37.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:37.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:37.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:37.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:37.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:37.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:37.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:37.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:37.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:37.617][self$createEntryFromContent] Accession numbers: 4781.
biodb.TRACE[2023-10-14 11:04:37.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:37.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:37.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:37.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:37.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:37.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:37.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:37.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:37.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:37.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:37.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:37.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:37.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:37.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:37.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:37.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:37.647][private$loadEntries] Creating entries from ids [1]: "16587".
biodb.DEBUG[2023-10-14 11:04:37.648][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:04:37.650][cch$loadFileContent] Trying to load 1 files from cache: [1]: "16587".
biodb.TRACE[2023-10-14 11:04:37.651][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:04:37.653][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:04:37.654][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:04:37.655][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:04:37.656][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:04:37.657][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:04:37.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:37.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:37.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:37.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:37.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:37.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:37.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:37.674][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.DEBUG[2023-10-14 11:04:37.677][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:37.679][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:37.680][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.TRACE[2023-10-14 11:04:38.371][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587).
biodb.DEBUG[2023-10-14 11:04:39.057][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:39.060][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.content"
biodb.TRACE[2023-10-14 11:04:39.064][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.request"
biodb.TRACE[2023-10-14 11:04:39.067][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/16587.xml"
biodb.DEBUG[2023-10-14 11:04:39.069][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:04:39.070][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:04:39.072][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:04:39.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:39.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:39.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:39.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:39.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:39.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:39.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:39.089][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:39.090][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:39.091][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.092][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:39.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:39.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.098][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:39.100][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:39.101][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.102][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.103][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:39.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:39.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.108][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:39.109][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:39.110][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.112][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:39.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:39.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.118][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:39.119][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:39.120][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.122][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:39.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:39.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.137][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:39.138][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:39.139][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.140][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:39.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:39.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.146][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:39.148][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:39.149][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.150][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.151][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:39.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:39.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.156][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:39.158][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:39.159][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.160][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.161][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:39.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:39.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.166][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:39.168][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:39.169][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.170][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:39.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:39.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.176][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:39.177][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:39.178][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.180][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.181][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:39.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:39.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.186][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:39.187][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:39.189][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.190][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.191][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:39.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:39.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.196][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:39.197][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:39.198][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.199][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.201][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:39.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:39.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:39.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:39.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:39.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:39.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:39.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:39.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:39.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:39.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:39.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:39.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:39.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:39.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:39.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:39.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:39.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:39.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:39.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:39.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:39.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:39.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:39.253][self$createEntryFromContent] Accession numbers: 16587.
biodb.TRACE[2023-10-14 11:04:39.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:39.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:39.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:39.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:39.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:39.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:39.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:39.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:39.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:39.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:39.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:39.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:39.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:39.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:39.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:39.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:39.282][private$loadEntries] Creating entries from ids [1]: "19804".
biodb.DEBUG[2023-10-14 11:04:39.283][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:04:39.285][cch$loadFileContent] Trying to load 1 files from cache: [1]: "19804".
biodb.TRACE[2023-10-14 11:04:39.287][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:04:39.288][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:04:39.289][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:04:39.291][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:04:39.292][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:04:39.293][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:04:39.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:39.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:39.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:39.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:39.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:39.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:39.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:39.310][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.DEBUG[2023-10-14 11:04:39.313][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:39.315][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:39.316][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.TRACE[2023-10-14 11:04:39.960][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804).
biodb.DEBUG[2023-10-14 11:04:40.600][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:40.604][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.content"
biodb.TRACE[2023-10-14 11:04:40.608][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.request"
biodb.TRACE[2023-10-14 11:04:40.612][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19804.xml"
biodb.DEBUG[2023-10-14 11:04:40.614][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:04:40.615][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:04:40.618][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:04:40.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:40.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:40.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:40.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:40.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:40.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:40.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:40.637][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:40.639][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:40.640][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.641][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:40.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:40.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.648][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:40.649][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:40.650][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.651][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.653][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:40.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:40.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.658][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:40.659][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:40.660][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.661][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.663][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:40.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:40.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.668][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:40.669][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:40.670][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.672][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:40.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:40.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.678][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:40.679][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:40.680][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.682][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:40.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:40.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.688][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:40.689][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:40.691][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.692][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.693][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:40.695][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:40.696][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.697][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.698][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:40.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:40.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.703][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:40.705][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:40.706][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.707][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:40.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:40.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.713][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:40.714][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:40.715][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.717][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.718][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:40.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:40.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.723][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:40.724][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:40.726][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.727][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.728][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:40.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:40.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.733][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:40.734][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:40.735][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.736][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.738][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:40.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:40.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:40.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:40.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:40.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:40.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:40.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:40.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:40.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:40.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:40.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:40.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:40.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:40.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:40.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:40.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:40.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:40.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:40.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:40.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:40.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:40.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:40.790][self$createEntryFromContent] Accession numbers: 19804.
biodb.TRACE[2023-10-14 11:04:40.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:40.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:40.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:40.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:40.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:40.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:40.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:40.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:40.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:40.976][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:04:41.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:41.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:41.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:41.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:41.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:41.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:41.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:41.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:41.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:41.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:41.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:41.028][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:04:41.029][private$selectFields]
biodb.TRACE[2023-10-14 11:04:41.030][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:04:41.031][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:04:41.032][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:04:41.033][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.034][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.035][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:41.036][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:41.038][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.039][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.040][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:41.041][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:41.042][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:04:41.043][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:04:41.044][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.045][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.047][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:41.048][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:41.049][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:04:41.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:41.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:41.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:41.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:41.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:41.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:41.064][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2023-10-14 11:04:41.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:41.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:41.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:41.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:41.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:41.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:41.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:41.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:41.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:41.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:41.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:41.088][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:04:41.090][private$selectFields]
biodb.TRACE[2023-10-14 11:04:41.091][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:04:41.092][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:04:41.094][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:04:41.095][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.096][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.098][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:41.099][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:41.101][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.102][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.103][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:41.105][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:41.106][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:04:41.107][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:04:41.109][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.110][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.112][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:41.113][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:41.114][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:04:41.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:41.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:41.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:41.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:41.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:41.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:41.133][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2023-10-14 11:04:41.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:41.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:41.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:41.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:41.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:41.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:41.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:41.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:41.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:41.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:41.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:41.162][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:04:41.163][private$selectFields]
biodb.TRACE[2023-10-14 11:04:41.164][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:04:41.166][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:04:41.167][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:04:41.168][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.170][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.171][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:41.172][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:41.174][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.175][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.177][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:41.178][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:41.179][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:04:41.181][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:04:41.182][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.184][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.185][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:41.186][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:41.188][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:04:41.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:41.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:41.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:41.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:41.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:41.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:41.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:41.206][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2023-10-14 11:04:41.208][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:04:41.209][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:04:41.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:41.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:41.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:41.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:41.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:41.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:41.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:41.230][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:04:41.235][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:41.237][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:41.240][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2023-10-14 11:04:41.887][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2023-10-14 11:04:42.532][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:42.534][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content"
biodb.TRACE[2023-10-14 11:04:42.539][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.request"
biodb.DEBUG[2023-10-14 11:04:42.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:42.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:42.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:42.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:42.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:42.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:42.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:42.557][private$loadEntries] Creating entries from ids [1]: "159630".
biodb.DEBUG[2023-10-14 11:04:42.558][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:04:42.560][cch$loadFileContent] Trying to load 1 files from cache: [1]: "159630".
biodb.TRACE[2023-10-14 11:04:42.562][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:04:42.563][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:04:42.564][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:04:42.566][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:04:42.567][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:04:42.568][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:04:42.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:42.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:42.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:42.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:42.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:42.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:42.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:42.587][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.DEBUG[2023-10-14 11:04:42.598][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:42.599][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:42.601][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.TRACE[2023-10-14 11:04:43.246][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630).
biodb.DEBUG[2023-10-14 11:04:43.881][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:43.883][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.content"
biodb.TRACE[2023-10-14 11:04:43.887][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.request"
biodb.TRACE[2023-10-14 11:04:43.890][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/159630.xml"
biodb.DEBUG[2023-10-14 11:04:43.893][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:04:43.894][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:04:43.895][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:04:43.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:43.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:43.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:43.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:43.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:43.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:43.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:43.913][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:43.914][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:43.915][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:43.916][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:43.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:43.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:43.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:43.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:43.923][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:43.924][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:43.925][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:43.926][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:43.928][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:43.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:43.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:43.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:43.933][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:43.934][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:43.935][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:43.937][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:43.938][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:43.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:43.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:43.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:43.943][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:43.944][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:43.946][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:43.947][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:43.948][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:43.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:43.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:43.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:43.953][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:43.954][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:43.955][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:43.957][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:43.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:43.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:43.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:43.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:43.963][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:43.964][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:43.965][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:43.967][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:43.968][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:43.969][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:43.970][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:43.972][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:43.973][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:43.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:43.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:43.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:43.978][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:43.979][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:43.980][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:43.982][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:43.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:43.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:43.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:43.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:43.988][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:43.989][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:43.990][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:43.992][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:43.993][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:43.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:43.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:43.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:43.998][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:44.000][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:44.001][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:44.002][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:44.003][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:44.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:44.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:44.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:44.008][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:44.009][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:44.010][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:44.012][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:44.013][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:44.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:44.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:44.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:44.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:44.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:44.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:44.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:44.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:44.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:44.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:44.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:44.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:44.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:44.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:44.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:44.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:44.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:44.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:44.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:44.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:44.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:44.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:44.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:44.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:44.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:44.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:44.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:44.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:44.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:44.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:44.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:44.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:44.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:44.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:44.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:44.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:44.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:44.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:44.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:44.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:44.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:44.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:44.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:44.066][self$createEntryFromContent] Accession numbers: 159630.
biodb.TRACE[2023-10-14 11:04:44.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:44.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:44.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:44.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:44.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:44.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:44.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:44.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:44.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:44.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:44.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:44.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:44.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:44.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:44.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:44.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:44.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:44.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:44.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:44.095][private$loadEntries] Creating entries from ids [1]: "160202".
biodb.DEBUG[2023-10-14 11:04:44.096][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:04:44.098][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160202".
biodb.TRACE[2023-10-14 11:04:44.099][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:04:44.100][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:04:44.102][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:04:44.103][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:04:44.104][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:04:44.105][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:04:44.108][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:44.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:44.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:44.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:44.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:44.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:44.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:44.122][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.DEBUG[2023-10-14 11:04:44.126][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:44.127][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:44.128][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.TRACE[2023-10-14 11:04:44.800][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202).
biodb.DEBUG[2023-10-14 11:04:45.452][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:45.455][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.content"
biodb.TRACE[2023-10-14 11:04:45.460][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.request"
biodb.TRACE[2023-10-14 11:04:45.463][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160202.xml"
biodb.DEBUG[2023-10-14 11:04:45.465][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:04:45.467][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:04:45.468][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:04:45.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:45.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:45.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:45.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:45.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:45.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:45.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:45.486][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:45.487][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:45.488][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.489][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:45.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:45.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.496][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:45.497][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:45.498][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.499][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.501][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:45.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:45.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.506][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:45.507][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:45.508][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.510][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.512][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:45.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:45.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.517][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:45.518][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:45.519][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.520][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:45.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:45.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.527][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:45.528][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:45.529][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.531][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.532][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:45.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:45.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.537][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:45.539][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:45.540][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.541][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.543][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:45.545][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:45.546][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.547][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.548][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:45.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:45.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.553][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:45.555][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:45.556][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.557][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:45.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:45.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.563][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:45.565][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:45.571][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.578][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.580][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:45.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:45.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.585][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:45.586][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:45.587][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.589][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.590][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:45.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:45.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.596][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:45.597][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:45.598][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.600][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.601][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:45.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:45.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:45.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:45.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:45.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:45.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:45.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:45.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:45.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:45.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:45.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:45.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:45.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:45.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:45.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:45.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:45.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:45.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:45.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:45.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:45.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:45.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:45.655][self$createEntryFromContent] Accession numbers: 160202.
biodb.TRACE[2023-10-14 11:04:45.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:45.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:45.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:45.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:45.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:45.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:45.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:45.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:45.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:45.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:45.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:45.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:45.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:45.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:45.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:45.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:45.684][private$loadEntries] Creating entries from ids [1]: "160393".
biodb.DEBUG[2023-10-14 11:04:45.686][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:04:45.687][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160393".
biodb.TRACE[2023-10-14 11:04:45.689][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:04:45.690][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:04:45.691][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:04:45.693][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:04:45.694][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:04:45.695][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:04:45.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:45.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:45.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:45.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:45.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:45.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:45.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:45.712][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.DEBUG[2023-10-14 11:04:45.715][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:45.716][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:45.718][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.TRACE[2023-10-14 11:04:46.604][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393).
biodb.DEBUG[2023-10-14 11:04:47.304][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:47.307][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.content"
biodb.TRACE[2023-10-14 11:04:47.311][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.request"
biodb.TRACE[2023-10-14 11:04:47.314][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160393.xml"
biodb.DEBUG[2023-10-14 11:04:47.316][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:04:47.318][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:04:47.319][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:04:47.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:47.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:47.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:47.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:47.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:47.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:47.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:47.336][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:47.338][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:47.339][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.340][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:47.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:47.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.346][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:47.348][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:47.349][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.350][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.352][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:47.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:47.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.357][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:47.358][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:47.359][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.361][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.362][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:47.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:47.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.368][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:47.369][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:47.370][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.371][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.373][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:47.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:47.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.378][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:47.380][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:47.381][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.382][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:47.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:47.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.388][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:47.390][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:47.391][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.392][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.393][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:47.395][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:47.396][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.397][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.398][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:47.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:47.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.403][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:47.404][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:47.406][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.407][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:47.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:47.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.413][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:47.414][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:47.415][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.416][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.418][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:47.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:47.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.423][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:47.424][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:47.425][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.427][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.428][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:47.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:47.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.433][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:47.434][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:47.436][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.437][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.438][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:47.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:47.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:47.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:47.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:47.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:47.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:47.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:47.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:47.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:47.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:47.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:47.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:47.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:47.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:47.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:47.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:47.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:47.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:47.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:47.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:47.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:47.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:47.490][self$createEntryFromContent] Accession numbers: 160393.
biodb.TRACE[2023-10-14 11:04:47.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:47.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:47.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:47.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:47.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:47.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:47.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:47.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:47.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:47.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:47.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:47.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:47.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:47.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:47.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:47.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:47.520][private$loadEntries] Creating entries from ids [1]: "160991".
biodb.DEBUG[2023-10-14 11:04:47.521][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:04:47.523][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160991".
biodb.TRACE[2023-10-14 11:04:47.524][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:04:47.525][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:04:47.527][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:04:47.532][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:04:47.537][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:04:47.538][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:04:47.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:47.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:47.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:47.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:47.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:47.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:47.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:47.555][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.DEBUG[2023-10-14 11:04:47.558][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:47.560][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:47.561][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.TRACE[2023-10-14 11:04:48.274][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991).
biodb.DEBUG[2023-10-14 11:04:48.897][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:48.899][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.content"
biodb.TRACE[2023-10-14 11:04:48.903][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.request"
biodb.TRACE[2023-10-14 11:04:48.906][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160991.xml"
biodb.DEBUG[2023-10-14 11:04:48.908][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:04:48.909][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:04:48.911][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:04:48.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:48.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:48.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:48.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:48.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:48.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:48.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:48.928][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:48.929][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:48.930][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:48.931][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:48.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:48.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:48.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:48.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:48.937][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:48.938][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:48.939][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:48.940][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:48.942][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:48.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:48.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:48.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:48.947][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:48.948][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:48.949][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:48.950][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:48.952][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:48.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:48.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:48.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:48.957][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:48.958][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:48.959][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:48.960][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:48.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:48.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:48.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:48.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:48.966][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:48.968][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:48.969][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:48.970][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:48.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:48.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:48.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:48.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:48.976][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:48.977][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:48.978][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:48.979][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:48.981][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:48.982][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:48.983][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:48.984][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:48.985][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:48.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:48.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:48.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:48.990][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:48.991][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:48.992][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:48.994][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:48.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:48.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:48.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:48.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:49.000][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:49.001][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:49.002][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:49.003][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:49.005][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:49.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:49.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:49.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:49.009][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:49.011][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:49.012][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:49.013][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:49.014][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:49.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:49.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:49.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:49.019][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:49.020][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:49.021][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:49.022][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:49.024][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:49.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:49.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:49.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:49.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:49.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:49.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:49.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:49.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:49.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:49.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:49.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:49.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:49.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:49.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:49.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:49.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:49.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:49.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:49.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:49.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:49.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:49.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:49.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:49.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:49.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:49.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:49.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:49.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:49.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:49.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:49.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:49.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:49.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:49.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:49.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:49.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:49.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:49.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:49.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:49.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:49.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:49.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:49.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:49.076][self$createEntryFromContent] Accession numbers: 160991.
biodb.TRACE[2023-10-14 11:04:49.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:49.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:49.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:49.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:49.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:49.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:49.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:49.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:49.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:49.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:49.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:49.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:49.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:49.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:49.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:49.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:49.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:49.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:49.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:49.105][private$loadEntries] Creating entries from ids [1]: "164975".
biodb.DEBUG[2023-10-14 11:04:49.107][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:04:49.109][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164975".
biodb.TRACE[2023-10-14 11:04:49.110][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:04:49.111][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:04:49.113][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:04:49.114][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:04:49.115][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:04:49.116][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:04:49.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:49.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:49.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:49.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:49.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:49.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:49.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:49.133][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.DEBUG[2023-10-14 11:04:49.137][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:49.138][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:49.139][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.TRACE[2023-10-14 11:04:49.903][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975).
biodb.DEBUG[2023-10-14 11:04:50.543][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:50.546][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.content"
biodb.TRACE[2023-10-14 11:04:50.550][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.request"
biodb.TRACE[2023-10-14 11:04:50.554][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164975.xml"
biodb.DEBUG[2023-10-14 11:04:50.556][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:04:50.557][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:04:50.559][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:04:50.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:50.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:50.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:50.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:50.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:50.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:50.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:50.576][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:50.577][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:50.578][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.579][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:50.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:50.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.585][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:50.586][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:50.588][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.589][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.590][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:50.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:50.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.595][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:50.596][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:50.597][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.598][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.600][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:50.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:50.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.605][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:50.606][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:50.607][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.608][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:50.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:50.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.615][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:50.616][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:50.617][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.618][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:50.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:50.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.624][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:50.625][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:50.626][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.637][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.639][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:50.640][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:50.641][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.642][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.643][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:50.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:50.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.649][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:50.651][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:50.652][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.653][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:50.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:50.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.659][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:50.660][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:50.662][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.663][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.664][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:50.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:50.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.669][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:50.670][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:50.671][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.673][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.674][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:50.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:50.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.679][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:50.680][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:50.681][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.682][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:50.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:50.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:50.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:50.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:50.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:50.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:50.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:50.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:50.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:50.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:50.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:50.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:50.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:50.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:50.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:50.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:50.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:50.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:50.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:50.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:50.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:50.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:50.737][self$createEntryFromContent] Accession numbers: 164975.
biodb.TRACE[2023-10-14 11:04:50.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:50.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:50.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:50.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:50.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:50.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:50.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:50.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:50.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:50.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:50.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:50.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:50.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:50.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:50.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:50.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:50.766][private$loadEntries] Creating entries from ids [1]: "164994".
biodb.DEBUG[2023-10-14 11:04:50.767][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:04:50.769][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164994".
biodb.TRACE[2023-10-14 11:04:50.770][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:04:50.772][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:04:50.773][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:04:50.774][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:04:50.775][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:04:50.776][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:04:50.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:50.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:50.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:50.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:50.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:50.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:50.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:50.794][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.DEBUG[2023-10-14 11:04:50.797][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:50.798][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:50.800][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.TRACE[2023-10-14 11:04:51.451][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994).
biodb.DEBUG[2023-10-14 11:04:52.096][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:52.099][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.content"
biodb.TRACE[2023-10-14 11:04:52.103][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.request"
biodb.TRACE[2023-10-14 11:04:52.106][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164994.xml"
biodb.DEBUG[2023-10-14 11:04:52.108][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:04:52.109][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:04:52.111][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:04:52.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:52.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:52.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:52.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:52.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:52.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:52.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:52.127][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:52.129][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:52.130][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.131][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:52.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:52.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.137][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:52.138][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:52.139][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.141][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.142][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:52.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:52.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.147][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:52.148][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:52.149][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.150][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.152][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:52.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:52.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.157][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:52.158][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:52.159][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.160][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:52.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:52.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.167][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:52.168][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:52.169][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.170][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:52.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:52.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.176][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:52.178][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:52.179][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.180][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.181][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:52.183][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:52.184][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.185][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.186][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:52.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:52.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.191][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:52.192][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:52.193][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.194][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:52.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:52.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.201][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:52.202][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:52.203][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.204][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.206][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:52.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:52.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.211][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:52.212][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:52.213][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.215][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.216][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:52.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:52.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.221][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:52.222][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:52.223][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.224][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.226][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:52.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:52.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:52.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:52.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:52.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:52.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:52.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:52.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:52.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:52.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:52.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:52.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:52.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:52.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:52.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:52.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:52.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:52.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:52.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:52.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:52.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:52.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:52.278][self$createEntryFromContent] Accession numbers: 164994.
biodb.TRACE[2023-10-14 11:04:52.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:52.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:52.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:52.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:52.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:52.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:52.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:52.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:52.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:52.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:52.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:52.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:52.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:52.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:52.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:52.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:52.315][private$loadEntries] Creating entries from ids [1]: "169251".
biodb.DEBUG[2023-10-14 11:04:52.316][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:04:52.318][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169251".
biodb.TRACE[2023-10-14 11:04:52.319][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:04:52.321][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:04:52.322][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:04:52.323][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:04:52.324][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:04:52.325][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:04:52.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:52.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:52.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:52.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:52.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:52.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:52.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:52.342][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.DEBUG[2023-10-14 11:04:52.346][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:52.347][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:52.349][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.TRACE[2023-10-14 11:04:52.911][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251).
biodb.DEBUG[2023-10-14 11:04:53.537][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:53.539][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.content"
biodb.TRACE[2023-10-14 11:04:53.543][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.request"
biodb.TRACE[2023-10-14 11:04:53.547][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169251.xml"
biodb.DEBUG[2023-10-14 11:04:53.548][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:04:53.550][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:04:53.551][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:04:53.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:53.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:53.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:53.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:53.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:53.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:53.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:53.568][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:53.569][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:53.570][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.571][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:53.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:53.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.577][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:53.579][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:53.580][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.581][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.582][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:53.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:53.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.587][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:53.588][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:53.589][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.590][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.592][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:53.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:53.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.597][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:53.598][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:53.599][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.600][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:53.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:53.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.606][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:53.608][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:53.609][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.610][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:53.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:53.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.616][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:53.617][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:53.618][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.619][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.621][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:53.622][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:53.623][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.624][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.626][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:53.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:53.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.630][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:53.632][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:53.633][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.634][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:53.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:53.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.640][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:53.641][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:53.643][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.644][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.645][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:53.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:53.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.650][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:53.651][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:53.653][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.654][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.655][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:53.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:53.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.660][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:53.661][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:53.662][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.663][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.665][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:53.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:53.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:53.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:53.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:53.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:53.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:53.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:53.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:53.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:53.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:53.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:53.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:53.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:53.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:53.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:53.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:53.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:53.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:53.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:53.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:53.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:53.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:53.716][self$createEntryFromContent] Accession numbers: 169251.
biodb.TRACE[2023-10-14 11:04:53.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:53.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:53.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:53.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:53.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:53.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:53.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:53.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:53.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:53.733][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:04:53.737][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:53.738][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:53.740][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2023-10-14 11:04:54.384][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2023-10-14 11:04:55.023][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:55.026][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content"
biodb.TRACE[2023-10-14 11:04:55.031][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.request"
biodb.DEBUG[2023-10-14 11:04:55.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:55.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:55.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:55.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:55.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:55.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:55.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:55.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:55.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:55.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:55.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:55.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:55.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:55.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:55.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:55.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:55.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:55.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:55.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:55.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:55.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:55.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:55.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:55.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:55.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:55.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:55.078][private$loadEntries] Creating entries from ids [1]: "71954".
biodb.DEBUG[2023-10-14 11:04:55.079][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:04:55.081][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71954".
biodb.TRACE[2023-10-14 11:04:55.083][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:04:55.084][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:04:55.085][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:04:55.086][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:04:55.088][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:04:55.089][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:04:55.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:55.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:55.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:55.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:55.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:55.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:55.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:04:55.106][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.DEBUG[2023-10-14 11:04:55.109][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:55.110][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:55.112][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.TRACE[2023-10-14 11:04:55.760][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954).
biodb.DEBUG[2023-10-14 11:04:56.410][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:04:56.412][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.content"
biodb.TRACE[2023-10-14 11:04:56.416][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.request"
biodb.TRACE[2023-10-14 11:04:56.432][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71954.xml"
biodb.DEBUG[2023-10-14 11:04:56.434][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:04:56.435][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:04:56.436][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:04:56.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:04:56.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:04:56.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:04:56.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:04:56.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:04:56.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:04:56.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:04:56.453][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:56.455][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:56.456][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.457][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:56.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:56.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.463][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:56.464][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:56.466][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.467][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.468][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:04:56.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:04:56.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.473][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:56.474][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:56.475][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.476][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.478][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:04:56.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:04:56.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.482][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:56.484][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:56.485][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.486][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:04:56.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:04:56.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.492][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:56.493][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:56.494][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.496][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:04:56.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:04:56.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.502][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:56.503][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:04:56.504][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.505][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.507][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:56.508][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:56.509][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.510][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.511][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:04:56.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:56.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.516][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:56.518][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:56.519][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.520][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:56.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:04:56.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.526][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:56.527][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:56.528][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.529][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.531][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:04:56.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:04:56.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.536][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:56.537][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:56.538][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.539][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.541][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:04:56.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:04:56.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.546][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:56.547][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:56.548][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.549][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.551][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:04:56.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:04:56.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:56.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:56.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:56.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:56.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:56.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:56.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:04:56.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:04:56.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:56.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:56.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:56.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:56.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:56.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:56.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:56.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:56.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:56.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:56.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:04:56.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:04:56.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:56.603][self$createEntryFromContent] Accession numbers: 71954.
biodb.TRACE[2023-10-14 11:04:56.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:56.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:56.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:56.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:56.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:04:56.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:56.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:04:56.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:04:56.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:04:56.619][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:04:56.623][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:04:56.624][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:04:56.626][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2023-10-14 11:05:00.066][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2023-10-14 11:05:00.898][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:00.901][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content"
biodb.TRACE[2023-10-14 11:05:00.907][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.request"
biodb.DEBUG[2023-10-14 11:05:00.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:00.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:00.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:00.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:00.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:00.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:00.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:00.927][private$loadEntries] Creating entries from ids [1]: "636".
biodb.DEBUG[2023-10-14 11:05:00.929][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:05:00.931][cch$loadFileContent] Trying to load 1 files from cache: [1]: "636".
biodb.TRACE[2023-10-14 11:05:00.932][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:05:00.933][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:05:00.935][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:05:00.936][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:05:00.937][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:05:00.938][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:05:00.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:00.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:00.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:00.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:00.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:00.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:00.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:00.955][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.DEBUG[2023-10-14 11:05:00.958][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:00.960][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:00.961][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.TRACE[2023-10-14 11:05:01.610][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636).
biodb.DEBUG[2023-10-14 11:05:02.305][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:02.307][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.content"
biodb.TRACE[2023-10-14 11:05:02.312][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.request"
biodb.TRACE[2023-10-14 11:05:02.315][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/636.xml"
biodb.DEBUG[2023-10-14 11:05:02.317][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:05:02.319][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:05:02.320][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:05:02.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:02.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:02.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:02.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:02.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:02.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:02.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:02.338][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:02.339][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:02.340][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.341][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:02.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:02.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.347][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:02.349][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:02.350][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.351][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.352][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:02.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:02.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.357][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:02.358][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:02.360][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.361][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.362][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:02.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:02.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.367][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:02.368][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:02.370][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.371][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:02.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:02.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.377][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:02.378][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:02.380][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.381][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:02.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:02.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.387][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:02.388][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:02.389][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.391][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.392][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:02.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:02.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.397][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:02.398][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:02.399][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.411][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.412][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:02.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:02.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.417][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:02.419][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:02.420][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.421][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:02.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:02.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.427][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:02.428][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:02.430][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.431][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.432][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:02.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:02.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.437][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:02.438][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:02.440][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.441][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.442][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:02.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:02.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.447][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:02.448][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:02.449][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.450][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.452][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:02.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:02.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:02.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:02.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:02.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:02.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:02.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:02.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:02.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:02.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:02.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:02.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:02.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:02.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:02.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:02.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:02.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:02.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:02.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:02.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:02.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:02.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:02.504][self$createEntryFromContent] Accession numbers: 636.
biodb.TRACE[2023-10-14 11:05:02.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:02.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:02.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:02.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:02.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:02.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:02.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:02.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:02.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:02.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:02.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:02.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:02.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:02.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:02.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:02.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:02.534][private$loadEntries] Creating entries from ids [1]: "3017".
biodb.DEBUG[2023-10-14 11:05:02.535][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:05:02.537][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3017".
biodb.TRACE[2023-10-14 11:05:02.538][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:05:02.540][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:05:02.541][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:05:02.542][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:05:02.543][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:05:02.544][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:05:02.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:02.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:02.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:02.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:02.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:02.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:02.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:02.562][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.DEBUG[2023-10-14 11:05:02.565][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:02.566][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:02.568][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.TRACE[2023-10-14 11:05:03.268][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017).
biodb.DEBUG[2023-10-14 11:05:03.918][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:03.921][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.content"
biodb.TRACE[2023-10-14 11:05:03.925][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.request"
biodb.TRACE[2023-10-14 11:05:03.928][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3017.xml"
biodb.DEBUG[2023-10-14 11:05:03.930][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:05:03.931][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:05:03.933][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:05:03.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:03.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:03.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:03.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:03.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:03.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:03.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:03.950][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:03.951][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:03.952][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:03.953][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:03.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:03.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:03.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:03.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:03.959][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:03.961][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:03.962][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:03.963][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:03.964][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:03.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:03.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:03.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:03.969][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:03.971][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:03.972][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:03.973][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:03.974][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:03.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:03.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:03.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:03.979][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:03.980][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:03.981][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:03.983][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:03.984][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:03.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:03.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:03.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:03.989][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:03.990][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:03.991][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:03.992][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:03.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:03.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:03.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:03.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:03.999][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:04.000][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:04.001][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.002][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.004][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:04.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:04.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.009][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:04.010][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:04.011][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.012][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.014][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:04.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:04.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.018][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:04.020][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:04.021][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.022][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:04.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:04.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.028][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:04.030][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:04.031][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.032][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.034][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:04.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:04.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.039][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:04.040][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:04.041][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.042][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.044][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:04.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:04.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.048][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:04.050][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:04.051][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.052][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.053][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:04.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:04.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:04.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:04.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:04.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:04.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:04.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:04.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:04.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:04.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:04.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:04.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:04.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:04.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:04.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:04.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:04.106][self$createEntryFromContent] Accession numbers: 3017.
biodb.TRACE[2023-10-14 11:05:04.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:04.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:04.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:04.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:04.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:04.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:04.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:04.130][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:05:04.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:04.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:04.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:04.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:04.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:04.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:04.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:04.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.155][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:04.156][private$selectFields]
biodb.TRACE[2023-10-14 11:05:04.157][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:04.158][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:04.159][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:04.160][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.162][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.163][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.164][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.165][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.166][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.167][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.168][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.170][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:04.171][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:04.172][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.173][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.174][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.175][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.176][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:04.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.192][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2023-10-14 11:05:04.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:04.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:04.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:04.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:04.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:04.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:04.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:04.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.216][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:04.217][private$selectFields]
biodb.TRACE[2023-10-14 11:05:04.218][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:04.219][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:04.221][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:04.222][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.223][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.224][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.225][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.226][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.228][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.229][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.230][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.231][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:04.232][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:04.234][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.235][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.236][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.237][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.238][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:04.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.254][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2023-10-14 11:05:04.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:04.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:04.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:04.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:04.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:04.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:04.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:04.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.278][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:04.279][private$selectFields]
biodb.TRACE[2023-10-14 11:05:04.280][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:04.281][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:04.282][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:04.284][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.285][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.286][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.287][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.288][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.289][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.290][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.292][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.293][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:04.294][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:04.295][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.296][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.297][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.298][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.300][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:04.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:04.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.316][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2023-10-14 11:05:04.318][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:05:04.319][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-10-14 11:05:04.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:04.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:04.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:04.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:04.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:04.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:04.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:04.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:04.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:04.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:04.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:04.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:04.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:04.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:04.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:04.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:04.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:04.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:04.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:04.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:04.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:04.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:04.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:04.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:04.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:04.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:04.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:04.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:04.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:04.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:04.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:04.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:04.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:04.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:04.477][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:04.481][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:04.483][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:04.485][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2023-10-14 11:05:05.056][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2023-10-14 11:05:05.681][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:05.683][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content"
biodb.TRACE[2023-10-14 11:05:05.688][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.request"
biodb.DEBUG[2023-10-14 11:05:05.692][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:05.696][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:05.697][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:05.700][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2023-10-14 11:05:06.348][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2023-10-14 11:05:06.995][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:06.998][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content"
biodb.TRACE[2023-10-14 11:05:07.004][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.request"
biodb.DEBUG[2023-10-14 11:05:07.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:07.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:07.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:07.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:07.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:07.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:07.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:07.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:07.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:07.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:07.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:07.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:07.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:07.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:07.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:07.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:07.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:07.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:07.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:07.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:07.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:07.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:07.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:07.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:07.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:07.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:07.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:07.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:07.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:07.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:07.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:07.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:07.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:07.079][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:07.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:07.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:07.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:07.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:07.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:07.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:07.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:07.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:07.096][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:05:07.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:07.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:07.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:07.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:07.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:07.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:07.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:07.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.122][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:07.123][private$selectFields]
biodb.TRACE[2023-10-14 11:05:07.125][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:07.126][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:07.127][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:07.128][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.130][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.131][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.132][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.133][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.134][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.136][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.137][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.138][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:07.139][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:07.140][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.142][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.143][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.144][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.145][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:07.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.162][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2023-10-14 11:05:07.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:07.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:07.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:07.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:07.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:07.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:07.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:07.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.229][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:07.230][private$selectFields]
biodb.TRACE[2023-10-14 11:05:07.231][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:07.233][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:07.234][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:07.235][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.236][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.237][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.238][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.240][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.241][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.242][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.243][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.244][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:07.258][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:07.260][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.261][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.263][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.264][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.265][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:07.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.283][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-10-14 11:05:07.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:07.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:07.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:07.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:07.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:07.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:07.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:07.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.308][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:07.309][private$selectFields]
biodb.TRACE[2023-10-14 11:05:07.311][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:07.312][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:07.318][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:07.325][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.326][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.327][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.328][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.330][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.331][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.332][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.333][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.334][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:07.335][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:07.337][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.338][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.339][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.340][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.341][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:07.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:07.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:07.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:07.358][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2023-10-14 11:05:07.359][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:05:07.360][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:05:07.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:07.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:07.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:07.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:07.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:07.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:07.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:07.378][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:07.383][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:07.384][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:07.386][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2023-10-14 11:05:08.031][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2023-10-14 11:05:08.680][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:08.682][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content"
biodb.TRACE[2023-10-14 11:05:08.687][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.request"
biodb.DEBUG[2023-10-14 11:05:08.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:08.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:08.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:08.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:08.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:08.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:08.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:08.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:08.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:08.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:08.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:08.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:08.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:08.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:08.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:08.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:08.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:08.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:08.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:08.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:08.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:08.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:08.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:08.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:08.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:08.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:08.731][private$loadEntries] Creating entries from ids [1]: "91601".
biodb.DEBUG[2023-10-14 11:05:08.733][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:05:08.734][cch$loadFileContent] Trying to load 1 files from cache: [1]: "91601".
biodb.TRACE[2023-10-14 11:05:08.736][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:05:08.737][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:05:08.738][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:05:08.739][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:05:08.741][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:05:08.742][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:05:08.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:08.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:08.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:08.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:08.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:08.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:08.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:08.759][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.DEBUG[2023-10-14 11:05:08.762][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:08.763][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:08.765][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.TRACE[2023-10-14 11:05:09.348][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601).
biodb.DEBUG[2023-10-14 11:05:09.962][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:09.964][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.content"
biodb.TRACE[2023-10-14 11:05:09.969][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.request"
biodb.TRACE[2023-10-14 11:05:09.972][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91601.xml"
biodb.DEBUG[2023-10-14 11:05:09.975][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:05:09.976][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:05:09.977][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:05:09.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:09.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:09.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:09.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:09.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:09.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:09.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:09.995][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:09.996][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:09.997][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:09.999][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:10.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:10.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.005][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:10.006][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:10.007][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.008][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.010][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:10.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:10.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.015][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:10.016][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:10.017][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.018][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.020][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:10.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:10.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.025][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:10.026][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:10.027][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.028][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:10.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:10.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.035][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:10.036][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:10.037][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.038][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.040][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:10.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:10.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.044][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:10.046][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:10.047][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.048][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.049][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:10.051][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:10.052][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.053][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.054][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:10.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:10.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.059][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:10.061][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:10.062][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.063][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:10.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:10.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.069][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:10.070][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:10.072][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.073][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.074][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:10.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:10.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.079][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:10.081][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:10.082][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.083][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.084][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:10.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:10.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.089][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:10.091][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:10.092][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.093][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.094][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:10.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:10.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:10.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:10.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:10.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:10.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:10.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:10.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:10.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:10.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:10.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:10.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:10.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:10.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:10.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:10.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:10.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:10.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:10.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:10.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:10.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:10.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:10.147][self$createEntryFromContent] Accession numbers: 91601.
biodb.TRACE[2023-10-14 11:05:10.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:10.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:10.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:10.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:10.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:10.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:10.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:10.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:10.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:10.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:10.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:10.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:10.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:10.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:10.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:10.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:10.188][private$loadEntries] Creating entries from ids [1]: "95147".
biodb.DEBUG[2023-10-14 11:05:10.189][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:05:10.191][cch$loadFileContent] Trying to load 1 files from cache: [1]: "95147".
biodb.TRACE[2023-10-14 11:05:10.193][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:05:10.194][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:05:10.195][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:05:10.197][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:05:10.198][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:05:10.199][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:05:10.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:10.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:10.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:10.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:10.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:10.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:10.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:10.217][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.DEBUG[2023-10-14 11:05:10.220][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:10.222][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:10.223][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.TRACE[2023-10-14 11:05:10.887][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147).
biodb.DEBUG[2023-10-14 11:05:11.528][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:11.531][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.content"
biodb.TRACE[2023-10-14 11:05:11.535][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.request"
biodb.TRACE[2023-10-14 11:05:11.538][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/95147.xml"
biodb.DEBUG[2023-10-14 11:05:11.540][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:05:11.542][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:05:11.543][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:05:11.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:11.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:11.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:11.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:11.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:11.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:11.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:11.560][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:11.561][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:11.562][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.564][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:11.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:11.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.570][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:11.571][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:11.572][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.573][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.575][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:11.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:11.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.580][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:11.581][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:11.582][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.583][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.585][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:11.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:11.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.589][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:11.590][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:11.592][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.593][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.594][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:11.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:11.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.599][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:11.600][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:11.601][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.602][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:11.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:11.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.608][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:11.610][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:11.611][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.612][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.613][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:11.615][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:11.616][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.617][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.618][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:11.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:11.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.623][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:11.624][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:11.625][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.626][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:11.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:11.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.633][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:11.634][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:11.635][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.636][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.638][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:11.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:11.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.642][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:11.644][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:11.645][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.646][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.647][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:11.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:11.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.652][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:11.653][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:11.655][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.656][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.657][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:11.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:11.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:11.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:11.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:11.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:11.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:11.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:11.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:11.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:11.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:11.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:11.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:11.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:11.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:11.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:11.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:11.709][self$createEntryFromContent] Accession numbers: 95147.
biodb.TRACE[2023-10-14 11:05:11.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:11.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:11.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:11.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:11.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:11.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:11.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:11.724][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:05:11.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:11.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:11.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:11.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:11.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:11.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:11.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:11.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.750][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:11.751][private$selectFields]
biodb.TRACE[2023-10-14 11:05:11.752][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:11.753][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:11.754][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:11.755][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.757][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.758][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.759][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.760][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.761][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.762][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.764][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.765][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:11.766][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:11.767][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.768][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.769][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.770][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.772][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:11.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.787][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2023-10-14 11:05:11.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:11.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:11.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:11.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:11.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:11.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:11.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:11.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.812][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:11.813][private$selectFields]
biodb.TRACE[2023-10-14 11:05:11.814][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:11.816][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:11.817][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:11.818][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.819][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.820][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.822][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.823][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.824][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.825][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.826][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.827][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:11.829][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:11.830][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.831][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.832][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.833][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.834][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:11.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.858][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2023-10-14 11:05:11.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:11.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:11.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:11.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:11.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:11.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:11.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:11.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.882][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:11.884][private$selectFields]
biodb.TRACE[2023-10-14 11:05:11.885][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:11.886][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:11.887][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:11.888][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.889][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.890][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.892][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.893][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.894][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.895][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.896][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.897][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:11.898][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:11.900][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.901][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.902][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.903][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.904][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:11.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:11.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:11.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:11.920][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2023-10-14 11:05:11.921][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:05:11.923][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:05:11.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:11.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:11.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:11.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:11.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:11.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:11.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:11.940][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:11.944][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:11.945][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:11.948][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2023-10-14 11:05:12.592][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2023-10-14 11:05:13.233][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:13.236][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content"
biodb.TRACE[2023-10-14 11:05:13.241][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.request"
biodb.DEBUG[2023-10-14 11:05:13.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:13.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:13.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:13.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:13.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:13.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:13.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:13.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:13.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:13.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:13.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:13.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:13.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:13.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:13.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:13.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:13.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:13.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:13.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:13.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:13.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:13.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:13.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:13.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:13.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:13.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:13.286][private$loadEntries] Creating entries from ids [1]: "64199".
biodb.DEBUG[2023-10-14 11:05:13.287][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:05:13.289][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64199".
biodb.TRACE[2023-10-14 11:05:13.291][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:05:13.292][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:05:13.293][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:05:13.295][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:05:13.296][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:05:13.297][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:05:13.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:13.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:13.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:13.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:13.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:13.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:13.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:13.314][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.DEBUG[2023-10-14 11:05:13.318][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:13.319][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:13.321][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.TRACE[2023-10-14 11:05:14.011][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199).
biodb.DEBUG[2023-10-14 11:05:14.663][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:14.665][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.content"
biodb.TRACE[2023-10-14 11:05:14.669][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.request"
biodb.TRACE[2023-10-14 11:05:14.672][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64199.xml"
biodb.DEBUG[2023-10-14 11:05:14.674][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:05:14.675][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:05:14.677][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:05:14.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:14.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:14.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:14.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:14.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:14.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:14.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:14.694][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:14.695][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:14.696][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.697][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:14.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:14.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.703][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:14.704][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:14.706][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.707][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.708][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:14.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:14.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.713][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:14.714][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:14.715][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.716][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.718][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:14.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:14.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.722][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:14.724][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:14.725][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.726][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:14.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:14.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.733][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:14.734][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:14.735][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.736][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:14.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:14.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.742][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:14.744][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:14.745][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.746][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.747][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:14.748][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:14.750][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.751][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.752][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:14.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:14.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.757][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:14.758][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:14.759][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.760][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:14.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:14.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.767][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:14.768][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:14.769][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.770][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.772][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:14.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:14.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.776][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:14.778][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:14.779][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.780][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.781][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:14.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:14.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.786][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:14.787][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:14.789][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.790][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.791][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:14.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:14.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:14.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:14.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:14.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:14.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:14.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:14.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:14.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:14.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:14.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:14.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:14.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:14.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:14.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:14.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:14.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:14.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:14.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:14.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:14.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:14.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:14.854][self$createEntryFromContent] Accession numbers: 64199.
biodb.TRACE[2023-10-14 11:05:14.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:14.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:14.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:14.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:14.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:14.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:14.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:14.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:14.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:14.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:14.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:14.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:14.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:14.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:14.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:14.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:14.884][private$loadEntries] Creating entries from ids [1]: "65648".
biodb.DEBUG[2023-10-14 11:05:14.885][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:05:14.887][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65648".
biodb.TRACE[2023-10-14 11:05:14.889][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:05:14.890][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:05:14.891][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:05:14.892][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:05:14.894][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:05:14.895][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:05:14.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:14.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:14.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:14.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:14.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:14.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:14.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:14.912][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.DEBUG[2023-10-14 11:05:14.915][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:14.916][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:14.918][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.TRACE[2023-10-14 11:05:15.640][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648).
biodb.DEBUG[2023-10-14 11:05:16.291][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:16.293][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.content"
biodb.TRACE[2023-10-14 11:05:16.297][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.request"
biodb.TRACE[2023-10-14 11:05:16.300][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65648.xml"
biodb.DEBUG[2023-10-14 11:05:16.302][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:05:16.304][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:05:16.305][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:05:16.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:16.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:16.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:16.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:16.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:16.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:16.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:16.322][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:16.323][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:16.324][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.325][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:16.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:16.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.331][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:16.333][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:16.334][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.335][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.337][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:16.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:16.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.341][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:16.343][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:16.344][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.345][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.346][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:16.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:16.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.351][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:16.352][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:16.354][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.355][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:16.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:16.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.361][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:16.362][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:16.363][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.365][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.366][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:16.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:16.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.371][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:16.372][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:16.373][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.374][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.376][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:16.377][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.378][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.379][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.381][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:16.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.386][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:16.387][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:16.388][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.389][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:16.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:16.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.396][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:16.397][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:16.398][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.399][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.401][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:16.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:16.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.406][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:16.407][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:16.408][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.409][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.411][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:16.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:16.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.416][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:16.417][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:16.418][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.419][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.421][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:16.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:16.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:16.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:16.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:16.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:16.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:16.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:16.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:16.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:16.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:16.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:16.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:16.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:16.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:16.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:16.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:16.475][self$createEntryFromContent] Accession numbers: 65648.
biodb.TRACE[2023-10-14 11:05:16.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:16.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:16.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:16.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:16.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:16.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:16.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:16.490][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:05:16.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:16.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:16.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:16.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:16.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:16.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:16.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:16.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.516][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:16.517][private$selectFields]
biodb.TRACE[2023-10-14 11:05:16.518][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:16.520][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:16.521][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:16.522][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.523][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.524][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.526][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.527][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.528][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.529][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.530][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.532][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:16.533][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:16.534][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.535][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.537][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.538][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.539][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:16.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.556][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2023-10-14 11:05:16.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:16.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:16.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:16.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:16.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:16.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:16.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:16.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.588][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:16.589][private$selectFields]
biodb.TRACE[2023-10-14 11:05:16.590][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:16.591][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:16.593][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:16.594][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.595][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.596][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.597][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.599][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.600][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.601][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.602][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.603][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:16.604][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:16.606][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.607][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.608][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.609][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.610][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:16.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.627][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2023-10-14 11:05:16.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:16.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:16.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:16.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:16.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:16.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:16.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:16.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.653][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:16.654][private$selectFields]
biodb.TRACE[2023-10-14 11:05:16.656][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:16.657][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:16.658][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:16.659][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.660][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.662][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.663][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.664][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.665][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.666][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.667][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.669][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:16.670][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:16.671][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.672][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.673][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.674][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.676][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:16.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.691][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2023-10-14 11:05:16.692][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:05:16.694][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-10-14 11:05:16.705][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-10-14 11:05:16.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-10-14 11:05:16.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.710][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-10-14 11:05:16.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-10-14 11:05:16.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.714][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-10-14 11:05:16.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-10-14 11:05:16.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-10-14 11:05:16.724][biodb::testThat]
biodb.INFO [2023-10-14 11:05:16.725][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2023-10-14 11:05:16.726][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:05:16.727][biodb::testThat]
biodb.TRACE[2023-10-14 11:05:16.731][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-10-14 11:05:16.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-10-14 11:05:16.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.736][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-10-14 11:05:16.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-10-14 11:05:16.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.741][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-10-14 11:05:16.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-10-14 11:05:16.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:16.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:16.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:16.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:16.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:16.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:16.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:16.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:16.822][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:16.826][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:05:16.828][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2023-10-14 11:05:16.829][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:05:16.831][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2023-10-14 11:05:16.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:16.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:16.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:16.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:16.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:16.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:16.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:16.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:16.862][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:16.866][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:05:16.868][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2023-10-14 11:05:16.869][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:05:16.871][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2023-10-14 11:05:16.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:16.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:16.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:16.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:16.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:16.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:16.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:16.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:16.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:16.902][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:16.906][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:05:16.907][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2023-10-14 11:05:16.909][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:05:16.910][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2023-10-14 11:05:16.913][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:05:16.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:16.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:16.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:16.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:16.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:16.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:16.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:16.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.943][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:16.944][private$selectFields]
biodb.TRACE[2023-10-14 11:05:16.945][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:16.946][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:16.947][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:16.948][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.950][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.951][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.952][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.953][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.954][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.956][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.957][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.958][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:16.959][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:16.961][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.962][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.963][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.964][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.965][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:16.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:16.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:16.982][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2023-10-14 11:05:16.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:16.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:16.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:16.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:16.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:16.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:16.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:16.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:16.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.006][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:17.008][private$selectFields]
biodb.TRACE[2023-10-14 11:05:17.009][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:17.010][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:17.011][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:17.012][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.014][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.015][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.016][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.017][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.018][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.020][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.021][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.022][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:17.023][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:17.024][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.026][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.027][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.028][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.029][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:17.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.045][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-10-14 11:05:17.046][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:05:17.047][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:05:17.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:17.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:17.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:17.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:17.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:17.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:17.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:17.065][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:17.069][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:05:17.070][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2023-10-14 11:05:17.072][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:05:17.074][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2023-10-14 11:05:17.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:17.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:17.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:17.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:17.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:17.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:17.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:17.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:17.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:17.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:17.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:17.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:17.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:17.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:17.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:17.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:17.134][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:17.138][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:05:17.140][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2023-10-14 11:05:17.142][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:05:17.143][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2023-10-14 11:05:17.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:17.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:17.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:17.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:17.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:17.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:17.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:17.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:17.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:17.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:17.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:17.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:17.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:17.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:17.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:17.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:17.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:17.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:17.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:17.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:17.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:17.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:17.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:17.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:17.234][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:05:17.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:17.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:17.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:17.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:17.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:17.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:17.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:17.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.260][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:17.261][private$selectFields]
biodb.TRACE[2023-10-14 11:05:17.262][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:17.263][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:17.264][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:17.266][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.267][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.268][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.269][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.271][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.272][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.273][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.274][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.275][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:17.277][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:17.278][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.279][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.280][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.282][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.283][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:17.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.304][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2023-10-14 11:05:17.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:17.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:17.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:17.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:17.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:17.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:17.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:17.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.330][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:17.331][private$selectFields]
biodb.TRACE[2023-10-14 11:05:17.332][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:17.333][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:17.335][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:17.336][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.337][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.338][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.339][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.341][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.342][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.343][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.344][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.345][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:17.346][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:17.348][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.349][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.350][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.351][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.352][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:17.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.368][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2023-10-14 11:05:17.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:17.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:17.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:17.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:17.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:17.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:17.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:17.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.393][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:17.394][private$selectFields]
biodb.TRACE[2023-10-14 11:05:17.395][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:17.396][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:17.397][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:17.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.400][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.401][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.402][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.403][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.404][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.406][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.407][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.408][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:17.409][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:17.410][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.411][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.413][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.414][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.415][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:17.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:17.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.431][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2023-10-14 11:05:17.433][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:05:17.434][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:05:17.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:17.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:17.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:17.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:17.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:17.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:17.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:17.452][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:17.456][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:05:17.458][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2023-10-14 11:05:17.460][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:05:17.462][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2023-10-14 11:05:17.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:17.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:17.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:17.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:17.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:17.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:17.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:17.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:17.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:17.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:17.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:17.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:17.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:17.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:17.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:17.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:17.530][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:17.534][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:05:17.536][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dd9d19fb78fcc7453eff2e9dd7ba5702".
biodb.TRACE[2023-10-14 11:05:17.538][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:05:17.540][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content".
biodb.DEBUG[2023-10-14 11:05:17.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:17.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:17.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:17.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:17.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:17.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:17.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:17.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:17.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:17.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:17.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:17.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:17.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:17.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:17.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:17.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:17.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:17.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:17.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:17.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:17.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:17.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:17.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:17.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:17.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:17.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:17.621][private$loadEntries] Creating entries from ids [1]: "3510".
biodb.DEBUG[2023-10-14 11:05:17.623][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:05:17.624][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3510".
biodb.TRACE[2023-10-14 11:05:17.626][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:05:17.627][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:05:17.629][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:05:17.630][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:05:17.631][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:05:17.632][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:05:17.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:17.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:17.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:17.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:17.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:17.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:17.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:17.650][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.DEBUG[2023-10-14 11:05:17.653][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:17.654][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:17.656][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.TRACE[2023-10-14 11:05:18.299][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510).
biodb.DEBUG[2023-10-14 11:05:18.912][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:18.914][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.content"
biodb.TRACE[2023-10-14 11:05:18.918][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.request"
biodb.TRACE[2023-10-14 11:05:18.926][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3510.xml"
biodb.DEBUG[2023-10-14 11:05:18.931][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:05:18.933][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:05:18.934][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:05:18.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:18.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:18.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:18.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:18.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:18.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:18.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:18.951][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:18.952][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:18.953][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:18.954][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:18.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:18.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:18.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:18.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:18.960][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:18.962][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:18.963][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:18.964][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:18.965][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:18.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:18.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:18.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:18.970][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:18.971][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:18.972][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:18.973][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:18.975][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:18.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:18.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:18.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:18.980][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:18.981][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:18.982][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:18.983][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:18.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:18.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:18.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:18.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:18.989][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:18.991][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:18.992][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:18.993][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:18.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:18.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:18.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:18.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:18.999][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:19.000][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:19.002][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:19.003][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:19.004][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:19.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:19.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:19.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:19.009][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:19.010][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:19.011][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:19.012][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:19.014][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:19.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:19.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:19.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:19.018][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:19.020][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:19.021][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:19.022][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:19.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:19.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:19.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:19.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:19.028][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:19.029][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:19.030][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:19.031][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:19.033][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:19.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:19.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:19.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:19.038][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:19.039][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:19.040][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:19.041][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:19.043][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:19.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:19.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:19.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:19.048][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:19.049][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:19.050][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:19.051][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:19.053][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:19.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:19.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:19.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:19.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:19.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:19.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:19.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:19.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:19.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:19.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:19.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:19.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:19.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:19.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:19.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:19.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:19.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:19.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:19.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:19.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:19.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:19.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:19.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:19.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:19.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:19.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:19.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:19.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:19.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:19.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:19.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:19.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:19.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:19.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:19.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:19.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:19.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:19.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:19.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:19.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:19.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:19.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:19.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:19.105][self$createEntryFromContent] Accession numbers: 3510.
biodb.TRACE[2023-10-14 11:05:19.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:19.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:19.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:19.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:19.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:19.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:19.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:19.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:19.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:19.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:19.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:19.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:19.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:19.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:19.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:19.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:19.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:19.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:19.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:19.134][private$loadEntries] Creating entries from ids [1]: "7554".
biodb.DEBUG[2023-10-14 11:05:19.135][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:05:19.137][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7554".
biodb.TRACE[2023-10-14 11:05:19.139][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:05:19.140][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:05:19.141][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:05:19.143][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:05:19.144][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:05:19.145][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:05:19.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:19.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:19.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:19.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:19.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:19.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:19.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:19.162][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.DEBUG[2023-10-14 11:05:19.166][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:19.167][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:19.169][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.TRACE[2023-10-14 11:05:19.915][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554).
biodb.DEBUG[2023-10-14 11:05:20.591][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:20.594][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.content"
biodb.TRACE[2023-10-14 11:05:20.598][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.request"
biodb.TRACE[2023-10-14 11:05:20.602][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7554.xml"
biodb.DEBUG[2023-10-14 11:05:20.604][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:05:20.605][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:05:20.606][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:05:20.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:20.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:20.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:20.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:20.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:20.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:20.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:20.624][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:20.625][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:20.626][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.627][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:20.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:20.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.634][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:20.635][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:20.636][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.637][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.638][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:20.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:20.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.643][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:20.645][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:20.646][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.647][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.648][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:20.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:20.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.653][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:20.654][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:20.655][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.657][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:20.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:20.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.663][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:20.664][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:20.665][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.666][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:20.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:20.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.672][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:20.674][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:20.675][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.676][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.677][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:20.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:20.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.682][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:20.683][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:20.684][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.685][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.687][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:20.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:20.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.692][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:20.693][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:20.694][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.695][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:20.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:20.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.701][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:20.710][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:20.711][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.712][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.714][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:20.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:20.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.719][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:20.720][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:20.721][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.722][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.723][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:20.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:20.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.728][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:20.730][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:20.731][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.732][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.733][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:20.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:20.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:20.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:20.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:20.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:20.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:20.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:20.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:20.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:20.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:20.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:20.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:20.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:20.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:20.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:20.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:20.785][self$createEntryFromContent] Accession numbers: 7554.
biodb.TRACE[2023-10-14 11:05:20.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:20.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:20.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:20.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:20.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:20.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:20.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:20.801][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:05:20.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:20.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:20.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:20.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:20.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:20.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:20.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:20.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.826][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:20.827][private$selectFields]
biodb.TRACE[2023-10-14 11:05:20.828][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:20.829][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:20.830][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:20.831][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.832][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.834][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.835][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.836][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.837][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.838][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.839][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.841][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:20.842][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:20.843][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.844][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.845][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.846][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.848][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:20.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.863][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2023-10-14 11:05:20.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:20.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:20.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:20.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:20.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:20.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:20.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:20.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.888][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:20.889][private$selectFields]
biodb.TRACE[2023-10-14 11:05:20.890][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:20.891][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:20.892][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:20.894][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.895][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.896][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.897][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.899][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.900][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.901][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.902][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.904][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:20.905][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:20.906][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.907][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.908][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.910][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.911][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:20.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.927][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2023-10-14 11:05:20.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:20.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:20.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:20.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:20.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:20.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:20.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:20.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.952][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:20.954][private$selectFields]
biodb.TRACE[2023-10-14 11:05:20.955][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:20.956][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:20.957][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:20.958][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.960][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.961][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.962][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.964][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.965][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.966][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.967][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.969][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:20.970][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:20.971][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.972][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.973][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.975][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.976][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:20.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:20.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:20.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:20.992][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7554].
biodb.DEBUG[2023-10-14 11:05:20.993][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:05:20.994][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-10-14 11:05:21.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:21.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:21.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:21.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:21.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:21.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:21.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:21.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:21.087][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:21.091][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:05:21.093][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2023-10-14 11:05:21.094][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:05:21.096][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2023-10-14 11:05:21.099][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:21.103][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:05:21.105][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2023-10-14 11:05:21.106][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:05:21.108][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2023-10-14 11:05:21.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:21.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:21.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:21.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:21.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:21.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:21.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:21.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:21.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:21.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:21.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:21.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:21.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:21.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:21.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:21.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:21.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:21.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:21.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:21.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:21.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:21.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:21.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:21.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:21.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:21.195][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:05:21.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:21.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:21.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:21.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:21.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:21.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:21.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:21.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.220][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:21.221][private$selectFields]
biodb.TRACE[2023-10-14 11:05:21.222][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:21.223][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:21.225][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:21.226][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.227][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.228][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.229][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.231][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.232][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.233][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.234][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.235][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:21.237][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:21.238][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.239][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.240][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.241][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.243][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:21.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.259][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2023-10-14 11:05:21.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:21.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:21.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:21.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:21.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:21.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:21.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:21.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.285][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:21.286][private$selectFields]
biodb.TRACE[2023-10-14 11:05:21.287][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:21.288][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:21.289][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:21.291][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.292][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.293][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.294][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.295][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.297][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.298][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.299][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.300][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:21.301][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:21.302][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.304][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.305][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.306][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.307][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:21.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.323][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-10-14 11:05:21.325][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:21.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:21.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:21.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:21.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:21.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:21.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:21.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.348][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:21.349][private$selectFields]
biodb.TRACE[2023-10-14 11:05:21.351][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:21.352][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:21.353][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:21.354][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.355][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.356][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.358][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.359][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.360][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.361][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.362][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.364][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:21.365][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:21.366][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.367][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.368][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.369][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.371][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:21.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:21.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:21.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:21.387][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2023-10-14 11:05:21.388][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:05:21.389][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:05:21.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:21.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:21.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:21.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:21.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:21.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:21.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:21.407][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:21.411][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:21.413][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:21.415][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2023-10-14 11:05:22.048][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2023-10-14 11:05:22.711][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:22.714][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.content"
biodb.TRACE[2023-10-14 11:05:22.727][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.request"
biodb.DEBUG[2023-10-14 11:05:22.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:22.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:22.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:22.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:22.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:22.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:22.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:22.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:22.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:22.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:22.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:22.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:22.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:22.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:22.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:22.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:22.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:22.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:22.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:22.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:22.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:22.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:22.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:22.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:22.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:22.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:22.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:22.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:22.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:22.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:22.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:22.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:22.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:22.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:22.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:22.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:22.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:22.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:22.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:22.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:22.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:22.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:22.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:22.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:22.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:22.803][private$loadEntries] Creating entries from ids [1]: "27495".
biodb.DEBUG[2023-10-14 11:05:22.804][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:05:22.806][cch$loadFileContent] Trying to load 1 files from cache: [1]: "27495".
biodb.TRACE[2023-10-14 11:05:22.808][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:05:22.809][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:05:22.810][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:05:22.811][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:05:22.812][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:05:22.813][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:05:22.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:22.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:22.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:22.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:22.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:22.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:22.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:22.830][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.DEBUG[2023-10-14 11:05:22.833][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:22.835][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:22.836][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.TRACE[2023-10-14 11:05:23.498][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495).
biodb.DEBUG[2023-10-14 11:05:24.141][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:24.143][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.content"
biodb.TRACE[2023-10-14 11:05:24.147][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.request"
biodb.TRACE[2023-10-14 11:05:24.150][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/27495.xml"
biodb.DEBUG[2023-10-14 11:05:24.152][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:05:24.154][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:05:24.155][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:05:24.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:24.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:24.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:24.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:24.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:24.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:24.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:24.172][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:24.173][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:24.175][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.176][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:24.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:24.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.182][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:24.183][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:24.184][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.186][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.187][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:24.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:24.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.192][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:24.194][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:24.195][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.196][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.198][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:24.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:24.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.203][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:24.204][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:24.205][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.206][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:24.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:24.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.212][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:24.214][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:24.215][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.216][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:24.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:24.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.222][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:24.224][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:24.225][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.226][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.227][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:24.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:24.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.232][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:24.234][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:24.235][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.236][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.237][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:24.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:24.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.242][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:24.243][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:24.245][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.246][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:24.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:24.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.252][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:24.253][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:24.254][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.256][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.257][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:24.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:24.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.262][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:24.263][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:24.265][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.266][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.267][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:24.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:24.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.272][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:24.273][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:24.274][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.276][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.277][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:24.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:24.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:24.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:24.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:24.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:24.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:24.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:24.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:24.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:24.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:24.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:24.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:24.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:24.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:24.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:24.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:24.330][self$createEntryFromContent] Accession numbers: 27495.
biodb.TRACE[2023-10-14 11:05:24.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:24.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:24.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:24.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:24.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:24.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:24.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:24.346][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:05:24.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:24.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:24.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:24.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:24.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:24.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:24.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:24.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.372][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:24.373][private$selectFields]
biodb.TRACE[2023-10-14 11:05:24.374][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:24.375][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:24.376][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:24.378][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.379][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.380][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.381][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.382][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.393][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.398][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.399][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.401][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:24.402][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:24.403][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.404][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.406][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.407][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.408][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:24.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.425][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2023-10-14 11:05:24.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:24.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:24.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:24.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:24.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:24.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:24.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:24.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.451][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:24.452][private$selectFields]
biodb.TRACE[2023-10-14 11:05:24.454][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:24.455][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:24.456][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:24.457][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.459][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.460][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.461][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.463][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.464][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.465][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.466][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.467][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:24.469][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:24.470][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.471][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.472][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.473][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.474][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:24.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.490][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2023-10-14 11:05:24.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:24.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:24.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:24.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:24.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:24.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:24.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:24.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.514][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:24.515][private$selectFields]
biodb.TRACE[2023-10-14 11:05:24.516][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:24.518][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:24.519][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:24.520][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.521][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.522][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.523][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.525][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.526][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.527][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.528][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.529][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:24.530][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:24.531][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.533][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.534][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.535][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.536][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:24.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:24.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.552][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [27495].
biodb.DEBUG[2023-10-14 11:05:24.554][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:05:24.555][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:05:24.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:24.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:24.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:24.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:24.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:24.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:24.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:24.572][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:24.576][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:05:24.578][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2023-10-14 11:05:24.579][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:05:24.581][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2023-10-14 11:05:24.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:24.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:24.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:24.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:24.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:24.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:24.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:24.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:24.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:24.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:24.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:24.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:24.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:24.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:24.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:24.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:24.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:24.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:24.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:24.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:24.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:24.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:24.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:24.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:24.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:24.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:24.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:24.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:24.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:24.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:24.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:24.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:24.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:24.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:24.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:24.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:24.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:24.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:24.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:24.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:24.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:24.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:24.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:24.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:24.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:24.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:24.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:24.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:24.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:24.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:24.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:24.682][private$loadEntries] Creating entries from ids [1]: "65675".
biodb.DEBUG[2023-10-14 11:05:24.684][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:05:24.686][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65675".
biodb.TRACE[2023-10-14 11:05:24.687][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:05:24.688][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:05:24.690][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:05:24.691][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:05:24.692][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:05:24.693][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:05:24.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:24.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:24.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:24.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:24.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:24.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:24.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:24.710][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.DEBUG[2023-10-14 11:05:24.713][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:24.715][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:24.716][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.TRACE[2023-10-14 11:05:25.362][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675).
biodb.DEBUG[2023-10-14 11:05:26.029][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:26.032][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.content"
biodb.TRACE[2023-10-14 11:05:26.036][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.request"
biodb.TRACE[2023-10-14 11:05:26.040][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65675.xml"
biodb.DEBUG[2023-10-14 11:05:26.042][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:05:26.043][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:05:26.044][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:05:26.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:26.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:26.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:26.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:26.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:26.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:26.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:26.062][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:26.063][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:26.064][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.065][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:26.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:26.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.080][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:26.082][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:26.083][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.084][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.085][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:26.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:26.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.090][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:26.091][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:26.093][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.094][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.095][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:26.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:26.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.100][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:26.101][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:26.102][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.103][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:26.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:26.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.110][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:26.111][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:26.112][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.113][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:26.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:26.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.119][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:26.121][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:26.122][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.123][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.124][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:26.126][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:26.127][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.128][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.129][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:26.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:26.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.134][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:26.135][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:26.137][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.138][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:26.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:26.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.144][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:26.145][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:26.146][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.147][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:26.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:26.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.154][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:26.155][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:26.156][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.157][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.159][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:26.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:26.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.164][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:26.165][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:26.166][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.167][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.169][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:26.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:26.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:26.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:26.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:26.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:26.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:26.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:26.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:26.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:26.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:26.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:26.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:26.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:26.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:26.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:26.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:26.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:26.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:26.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:26.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:26.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:26.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:26.222][self$createEntryFromContent] Accession numbers: 65675.
biodb.TRACE[2023-10-14 11:05:26.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:26.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:26.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:26.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:26.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:26.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:26.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:26.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:26.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:26.238][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:26.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:26.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:26.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:26.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:26.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:26.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:26.252][private$loadEntries] Creating entries from ids [1]: "66318".
biodb.DEBUG[2023-10-14 11:05:26.253][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:05:26.255][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66318".
biodb.TRACE[2023-10-14 11:05:26.256][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:05:26.258][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:05:26.259][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:05:26.260][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:05:26.261][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:05:26.263][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:05:26.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:26.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:26.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:26.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:26.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:26.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:26.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:26.280][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.DEBUG[2023-10-14 11:05:26.283][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:26.285][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:26.286][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.TRACE[2023-10-14 11:05:26.935][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318).
biodb.DEBUG[2023-10-14 11:05:27.591][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:27.594][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.content"
biodb.TRACE[2023-10-14 11:05:27.598][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.request"
biodb.TRACE[2023-10-14 11:05:27.601][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66318.xml"
biodb.DEBUG[2023-10-14 11:05:27.603][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:05:27.604][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:05:27.606][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:05:27.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:27.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:27.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:27.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:27.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:27.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:27.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:27.622][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:27.624][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:27.625][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.626][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:27.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:27.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.632][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:27.634][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:27.635][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.636][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.638][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:27.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:27.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.642][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:27.644][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:27.645][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.646][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.647][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:27.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:27.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.652][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:27.653][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:27.655][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.656][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:27.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:27.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.662][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:27.664][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:27.665][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.666][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:27.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:27.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.672][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:27.673][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:27.675][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.676][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.677][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:27.678][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:27.680][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.681][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.682][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:27.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:27.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.687][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:27.688][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:27.689][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.690][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:27.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:27.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.696][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:27.698][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:27.699][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.700][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.702][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:27.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:27.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.706][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:27.708][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:27.709][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.710][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.711][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:27.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:27.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.716][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:27.717][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:27.719][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.720][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:27.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:27.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:27.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:27.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:27.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:27.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:27.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:27.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:27.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:27.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:27.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:27.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:27.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:27.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:27.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:27.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:27.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:27.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:27.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:27.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:27.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:27.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:27.781][self$createEntryFromContent] Accession numbers: 66318.
biodb.TRACE[2023-10-14 11:05:27.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:27.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:27.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:27.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:27.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:27.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:27.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:27.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:27.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:27.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:27.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:27.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:27.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:27.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:27.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:27.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:27.810][private$loadEntries] Creating entries from ids [1]: "67547".
biodb.DEBUG[2023-10-14 11:05:27.811][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:05:27.813][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67547".
biodb.TRACE[2023-10-14 11:05:27.814][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:05:27.815][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:05:27.817][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:05:27.818][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:05:27.819][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:05:27.820][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:05:27.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:27.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:27.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:27.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:27.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:27.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:27.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:27.837][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.DEBUG[2023-10-14 11:05:27.840][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:27.841][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:27.843][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.TRACE[2023-10-14 11:05:28.519][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547).
biodb.DEBUG[2023-10-14 11:05:29.172][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:29.174][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.content"
biodb.TRACE[2023-10-14 11:05:29.179][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.request"
biodb.TRACE[2023-10-14 11:05:29.182][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67547.xml"
biodb.DEBUG[2023-10-14 11:05:29.184][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:05:29.185][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:05:29.187][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:05:29.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:29.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:29.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:29.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:29.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:29.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:29.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:29.204][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:29.205][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:29.206][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.207][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:29.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:29.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.213][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:29.215][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:29.216][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.217][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.218][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:29.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:29.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.223][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:29.224][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:29.225][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.226][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.228][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:29.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:29.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.233][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:29.234][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:29.235][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.236][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:29.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:29.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.242][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:29.244][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:29.245][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.246][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.247][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:29.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:29.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.252][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:29.253][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:29.254][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.255][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.257][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:29.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:29.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.262][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:29.263][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:29.264][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.265][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.267][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:29.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:29.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.271][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:29.273][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:29.274][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.275][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:29.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:29.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.281][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:29.282][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:29.284][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.285][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.286][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:29.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:29.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.291][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:29.292][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:29.293][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.295][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.296][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:29.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:29.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.301][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:29.302][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:29.303][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.304][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.306][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:29.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:29.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:29.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:29.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:29.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:29.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:29.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:29.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:29.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:29.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:29.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:29.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:29.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:29.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:29.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:29.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:29.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:29.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:29.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:29.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:29.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:29.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:29.362][self$createEntryFromContent] Accession numbers: 67547.
biodb.TRACE[2023-10-14 11:05:29.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:29.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:29.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:29.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:29.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:29.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:29.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:29.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:29.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:29.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:29.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:29.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:29.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:29.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:29.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:29.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:29.391][private$loadEntries] Creating entries from ids [1]: "69550".
biodb.DEBUG[2023-10-14 11:05:29.392][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:05:29.394][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69550".
biodb.TRACE[2023-10-14 11:05:29.396][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:05:29.397][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:05:29.398][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:05:29.399][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:05:29.401][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:05:29.402][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:05:29.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:29.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:29.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:29.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:29.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:29.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:29.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:29.419][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.DEBUG[2023-10-14 11:05:29.422][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:29.424][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:29.425][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.TRACE[2023-10-14 11:05:30.078][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550).
biodb.DEBUG[2023-10-14 11:05:30.713][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:30.715][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.content"
biodb.TRACE[2023-10-14 11:05:30.720][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.request"
biodb.TRACE[2023-10-14 11:05:30.723][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69550.xml"
biodb.DEBUG[2023-10-14 11:05:30.725][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:05:30.726][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:05:30.728][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:05:30.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:30.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:30.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:30.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:30.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:30.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:30.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:30.745][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:30.746][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:30.747][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.749][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:30.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:30.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.755][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:30.756][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:30.757][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.758][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.760][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:30.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:30.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.765][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:30.766][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:30.767][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.768][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.770][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:30.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:30.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.775][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:30.776][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:30.777][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.778][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:30.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:30.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.785][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:30.787][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:30.788][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.789][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:30.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:30.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.795][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:30.796][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:30.798][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.799][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.800][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:30.801][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:30.802][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.803][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.805][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:30.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:30.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.809][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:30.811][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:30.812][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.813][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:30.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:30.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.819][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:30.820][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:30.821][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.822][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.824][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:30.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:30.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.828][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:30.830][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:30.831][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.832][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.833][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:30.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:30.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.838][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:30.839][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:30.840][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.841][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.842][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:30.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:30.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:30.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:30.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:30.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:30.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:30.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:30.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:30.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:30.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:30.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:30.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:30.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:30.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:30.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:30.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:30.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:30.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:30.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:30.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:30.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:30.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:30.894][self$createEntryFromContent] Accession numbers: 69550.
biodb.TRACE[2023-10-14 11:05:30.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:30.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:30.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:30.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:30.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:30.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:30.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:30.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:30.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:30.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:30.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:30.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:30.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:30.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:30.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:30.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:30.922][private$loadEntries] Creating entries from ids [1]: "71520".
biodb.DEBUG[2023-10-14 11:05:30.923][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:05:30.925][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71520".
biodb.TRACE[2023-10-14 11:05:30.927][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:05:30.928][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:05:30.929][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:05:30.930][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:05:30.931][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:05:30.933][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:05:30.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:30.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:30.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:30.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:30.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:30.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:30.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:30.949][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.DEBUG[2023-10-14 11:05:30.953][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:30.954][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:30.955][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.TRACE[2023-10-14 11:05:31.603][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520).
biodb.DEBUG[2023-10-14 11:05:32.249][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:32.252][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.content"
biodb.TRACE[2023-10-14 11:05:32.257][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.request"
biodb.TRACE[2023-10-14 11:05:32.261][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71520.xml"
biodb.DEBUG[2023-10-14 11:05:32.263][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:05:32.265][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:05:32.267][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:05:32.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:32.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:32.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:32.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:32.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:32.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:32.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:32.285][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:32.287][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:32.288][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.289][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:32.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:32.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.296][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:32.297][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:32.298][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.299][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.301][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:32.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:32.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.306][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:32.307][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:32.308][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.309][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.311][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:32.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:32.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.316][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:32.317][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:32.318][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.319][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:32.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:32.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.325][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:32.327][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:32.328][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.329][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:32.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:32.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.335][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:32.336][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:32.337][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.339][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.340][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:32.341][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:32.342][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.343][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.345][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:32.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:32.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.350][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:32.351][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:32.352][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.353][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:32.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:32.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.359][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:32.371][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:32.373][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.374][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.376][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:32.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:32.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.380][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:32.382][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:32.383][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.384][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.385][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:32.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:32.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.390][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:32.391][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:32.392][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.393][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.395][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:32.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:32.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:32.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:32.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:32.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:32.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:32.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:32.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:32.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:32.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:32.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:32.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:32.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:32.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:32.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:32.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:32.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:32.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:32.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:32.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:32.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:32.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:32.446][self$createEntryFromContent] Accession numbers: 71520.
biodb.TRACE[2023-10-14 11:05:32.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:32.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:32.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:32.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:32.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:32.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:32.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:32.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:32.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:32.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:32.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:32.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:32.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:32.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:32.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:32.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:32.474][private$loadEntries] Creating entries from ids [1]: "77600".
biodb.DEBUG[2023-10-14 11:05:32.475][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:05:32.477][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77600".
biodb.TRACE[2023-10-14 11:05:32.479][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:05:32.480][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:05:32.482][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:05:32.483][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:05:32.484][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:05:32.485][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:05:32.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:32.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:32.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:32.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:32.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:32.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:32.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:32.502][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.DEBUG[2023-10-14 11:05:32.506][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:32.507][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:32.509][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.TRACE[2023-10-14 11:05:33.155][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600).
biodb.DEBUG[2023-10-14 11:05:33.805][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:33.808][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.content"
biodb.TRACE[2023-10-14 11:05:33.812][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.request"
biodb.TRACE[2023-10-14 11:05:33.815][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77600.xml"
biodb.DEBUG[2023-10-14 11:05:33.817][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:05:33.819][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:05:33.820][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:05:33.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:33.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:33.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:33.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:33.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:33.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:33.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:33.837][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:33.839][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:33.840][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.841][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:33.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:33.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.847][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:33.848][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:33.849][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.850][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.852][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:33.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:33.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.857][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:33.858][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:33.859][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.860][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.862][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:33.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:33.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.866][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:33.868][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:33.869][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.870][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:33.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:33.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.876][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:33.877][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:33.879][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.880][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.881][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:33.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:33.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.886][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:33.887][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:33.889][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.890][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.891][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:33.892][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:33.894][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.895][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.896][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:33.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:33.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.901][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:33.902][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:33.903][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.904][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:33.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:33.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.911][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:33.912][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:33.913][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.914][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.916][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:33.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:33.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.921][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:33.922][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:33.923][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.924][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.926][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:33.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:33.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.931][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:33.932][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:33.933][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.934][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.936][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:33.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:33.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:33.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:33.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:33.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:33.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:33.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:33.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:33.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:33.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:33.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:33.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:33.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:33.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:33.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:33.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:33.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:33.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:33.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:33.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:33.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:33.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:33.988][self$createEntryFromContent] Accession numbers: 77600.
biodb.TRACE[2023-10-14 11:05:33.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:33.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:33.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:33.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:33.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:33.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:33.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:34.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:34.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:34.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:34.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:34.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:34.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:34.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:34.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:34.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:34.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:34.018][private$loadEntries] Creating entries from ids [1]: "77601".
biodb.DEBUG[2023-10-14 11:05:34.027][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:05:34.029][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77601".
biodb.TRACE[2023-10-14 11:05:34.031][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:05:34.032][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:05:34.033][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:05:34.034][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:05:34.036][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:05:34.037][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:05:34.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:34.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:34.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:34.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:34.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:34.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:34.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:34.054][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.DEBUG[2023-10-14 11:05:34.057][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:34.058][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:34.060][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.TRACE[2023-10-14 11:05:34.673][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601).
biodb.DEBUG[2023-10-14 11:05:35.264][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:35.267][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.content"
biodb.TRACE[2023-10-14 11:05:35.271][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.request"
biodb.TRACE[2023-10-14 11:05:35.275][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77601.xml"
biodb.DEBUG[2023-10-14 11:05:35.277][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:05:35.278][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:05:35.279][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:05:35.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:35.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:35.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:35.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:35.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:35.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:35.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:35.297][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:35.298][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:35.299][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.300][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:35.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:35.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.306][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:35.308][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:35.309][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.310][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.311][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:35.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:35.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.316][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:35.317][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:35.318][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.319][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.321][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:35.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:35.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.326][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:35.327][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:35.328][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.329][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:35.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:35.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.335][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:35.336][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:35.338][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.339][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:35.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:35.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.345][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:35.346][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:35.347][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.348][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.350][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:35.351][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.352][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.353][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.354][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:35.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.359][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:35.360][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:35.362][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.363][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:35.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:35.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.369][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:35.370][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:35.371][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.372][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.374][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:35.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:35.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.379][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:35.380][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:35.381][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.382][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.384][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:35.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:35.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.389][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:35.390][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:35.391][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.392][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.393][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:35.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:35.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:35.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:35.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:35.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:35.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:35.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:35.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:35.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:35.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:35.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:35.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:35.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:35.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:35.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:35.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:35.446][self$createEntryFromContent] Accession numbers: 77601.
biodb.TRACE[2023-10-14 11:05:35.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:35.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:35.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:35.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:35.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:35.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:35.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:35.461][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:05:35.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:35.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:35.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:35.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:35.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:35.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:35.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:35.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.486][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:35.488][private$selectFields]
biodb.TRACE[2023-10-14 11:05:35.489][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:35.490][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:35.491][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:35.492][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.493][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.494][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.496][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.497][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.498][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.499][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.500][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.501][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:35.503][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:35.504][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.505][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.506][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.507][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.509][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:35.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.524][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2023-10-14 11:05:35.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:35.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:35.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:35.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:35.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:35.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:35.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:35.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.549][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:35.550][private$selectFields]
biodb.TRACE[2023-10-14 11:05:35.552][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:35.553][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:35.554][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:35.555][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.557][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.558][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.559][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.560][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.561][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.562][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.564][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.565][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:35.566][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:35.567][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.568][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.570][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.571][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.572][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:35.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.596][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77600].
biodb.DEBUG[2023-10-14 11:05:35.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:35.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:35.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:35.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:35.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:35.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:35.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:35.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.620][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:35.622][private$selectFields]
biodb.TRACE[2023-10-14 11:05:35.623][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:35.624][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:35.625][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:35.626][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.627][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.628][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.629][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.631][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.632][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.633][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.634][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.635][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:35.636][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:35.637][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.639][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.640][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.641][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.642][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:35.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.657][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77601].
biodb.DEBUG[2023-10-14 11:05:35.659][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:05:35.660][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-10-14 11:05:35.671][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-10-14 11:05:35.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-10-14 11:05:35.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.676][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-10-14 11:05:35.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-10-14 11:05:35.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.680][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-10-14 11:05:35.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-10-14 11:05:35.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-10-14 11:05:35.690][biodb::testThat]
biodb.INFO [2023-10-14 11:05:35.691][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2023-10-14 11:05:35.692][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:05:35.693][biodb::testThat]
biodb.TRACE[2023-10-14 11:05:35.697][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-10-14 11:05:35.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-10-14 11:05:35.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.702][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-10-14 11:05:35.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-10-14 11:05:35.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.706][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-10-14 11:05:35.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-10-14 11:05:35.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:35.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:35.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:35.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:35.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:35.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:35.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:35.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:35.787][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:35.791][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:05:35.793][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2023-10-14 11:05:35.795][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:05:35.796][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2023-10-14 11:05:35.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:35.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:35.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:35.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:35.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:35.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:35.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:35.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:35.860][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:35.864][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:05:35.866][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2023-10-14 11:05:35.867][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:05:35.869][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2023-10-14 11:05:35.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:35.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:35.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:35.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:35.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:35.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:35.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:35.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:35.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:35.902][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:35.906][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:05:35.908][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2023-10-14 11:05:35.909][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:05:35.911][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2023-10-14 11:05:35.914][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:05:35.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:35.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:35.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:35.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:35.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:35.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:35.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:35.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.939][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:35.940][private$selectFields]
biodb.TRACE[2023-10-14 11:05:35.941][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:35.943][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:35.944][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:35.945][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.946][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.947][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.948][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.950][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.951][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.952][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.953][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.954][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:35.956][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:35.957][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.958][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.959][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.961][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.962][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:35.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:35.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:35.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:35.984][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2023-10-14 11:05:35.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:35.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:35.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:35.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:35.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:35.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:36.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:36.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.013][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:36.014][private$selectFields]
biodb.TRACE[2023-10-14 11:05:36.015][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:36.016][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:36.018][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:36.019][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.020][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.022][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.023][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.024][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.025][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.027][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.028][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.029][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:36.030][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:36.031][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.033][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.034][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.035][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.036][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:36.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.053][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-10-14 11:05:36.054][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:05:36.055][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:05:36.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:36.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:36.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:36.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:36.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:36.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:36.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:36.073][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:36.077][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:05:36.079][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2023-10-14 11:05:36.080][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:05:36.082][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2023-10-14 11:05:36.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:36.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:36.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:36.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:36.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:36.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:36.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:36.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:36.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:36.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:36.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:36.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:36.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:36.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:36.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:36.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:36.140][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:36.144][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:05:36.146][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2023-10-14 11:05:36.147][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:05:36.149][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2023-10-14 11:05:36.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:36.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:36.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:36.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:36.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:36.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:36.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:36.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:36.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:36.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:36.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:36.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:36.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:36.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:36.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:36.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:36.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:36.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:36.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:36.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:36.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:36.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:36.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:36.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:36.236][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:05:36.238][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:36.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:36.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:36.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:36.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:36.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:36.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:36.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.261][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:36.262][private$selectFields]
biodb.TRACE[2023-10-14 11:05:36.263][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:36.264][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:36.265][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:36.267][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.268][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.269][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.270][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.271][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.273][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.274][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.275][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.276][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:36.277][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:36.278][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.280][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.281][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.282][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.283][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:36.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.300][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2023-10-14 11:05:36.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:36.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:36.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:36.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:36.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:36.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:36.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:36.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.324][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:36.325][private$selectFields]
biodb.TRACE[2023-10-14 11:05:36.326][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:36.328][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:36.329][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:36.330][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.331][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.333][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.334][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.335][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.336][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.337][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.339][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.340][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:36.346][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:36.347][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.349][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.350][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.351][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.352][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:36.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.368][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2023-10-14 11:05:36.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:36.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:36.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:36.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:36.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:36.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:36.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:36.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.392][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:36.393][private$selectFields]
biodb.TRACE[2023-10-14 11:05:36.394][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:36.396][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:36.397][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:36.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.399][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.400][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.401][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.402][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.404][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.405][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.406][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.407][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:36.408][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:36.409][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.411][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.412][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.413][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.414][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:36.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.430][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2023-10-14 11:05:36.431][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:05:36.433][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:05:36.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:36.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:36.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:36.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:36.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:36.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:36.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:36.451][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:36.455][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:05:36.456][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2023-10-14 11:05:36.458][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:05:36.459][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2023-10-14 11:05:36.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:36.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:36.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:36.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:36.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:36.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:36.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:36.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:36.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:36.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:36.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:36.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:36.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:36.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:36.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:36.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:36.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:36.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:36.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:36.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:36.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:36.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:36.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:36.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:36.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:36.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:36.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:36.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:36.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:36.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:36.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:36.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:36.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:36.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:36.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:36.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:36.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:36.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:36.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:36.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:36.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:36.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:36.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:36.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:36.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:36.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:36.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:36.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:36.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:36.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:36.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:36.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:36.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:36.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:36.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:36.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:36.658][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:36.662][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:05:36.663][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2023-10-14 11:05:36.665][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:05:36.666][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2023-10-14 11:05:36.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:36.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:36.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:36.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:36.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:36.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:36.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:36.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:36.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:36.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:36.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:36.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:36.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:36.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:36.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:36.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:36.729][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:36.733][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:05:36.734][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dd9d19fb78fcc7453eff2e9dd7ba5702".
biodb.TRACE[2023-10-14 11:05:36.736][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:05:36.737][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content".
biodb.DEBUG[2023-10-14 11:05:36.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:36.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:36.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:36.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:36.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:36.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:36.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:36.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:36.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:36.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:36.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:36.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:36.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:36.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:36.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:36.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:36.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:36.797][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:05:36.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:36.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:36.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:36.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:36.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:36.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:36.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:36.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.822][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:36.823][private$selectFields]
biodb.TRACE[2023-10-14 11:05:36.824][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:36.825][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:36.826][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:36.827][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.828][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.829][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.831][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.832][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.833][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.834][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.835][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.836][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:36.837][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:36.838][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.840][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.841][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.842][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.843][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:36.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.859][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2023-10-14 11:05:36.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:36.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:36.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:36.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:36.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:36.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:36.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:36.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.883][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:36.884][private$selectFields]
biodb.TRACE[2023-10-14 11:05:36.885][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:36.886][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:36.887][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:36.888][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.889][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.890][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.891][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.893][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.894][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.895][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.896][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.897][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:36.898][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:36.899][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.901][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.902][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.903][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.904][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:36.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.920][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2023-10-14 11:05:36.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:36.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:36.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:36.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:36.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:36.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:36.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:36.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.944][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:36.945][private$selectFields]
biodb.TRACE[2023-10-14 11:05:36.946][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:36.948][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:36.949][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:36.950][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.951][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.952][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.953][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.955][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.956][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.957][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.958][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.959][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:36.960][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:36.962][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.963][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.964][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.965][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.966][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:36.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:36.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:36.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:36.982][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2023-10-14 11:05:36.983][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:05:36.984][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-10-14 11:05:37.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:37.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:37.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:37.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:37.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:37.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:37.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:37.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:37.096][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:37.100][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:05:37.102][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2023-10-14 11:05:37.103][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:05:37.105][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2023-10-14 11:05:37.108][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:37.112][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:05:37.114][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2023-10-14 11:05:37.115][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:05:37.117][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2023-10-14 11:05:37.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:37.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:37.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:37.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:37.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:37.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:37.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:37.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:37.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:37.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:37.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:37.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:37.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:37.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:37.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:37.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:37.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:37.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:37.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:37.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:37.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:37.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:37.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:37.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:37.208][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:05:37.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:37.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:37.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:37.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:37.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:37.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:37.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:37.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.233][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.234][private$selectFields]
biodb.TRACE[2023-10-14 11:05:37.235][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:37.236][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:37.238][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.239][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.240][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.241][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.242][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.243][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.245][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.246][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.247][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.248][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.249][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.251][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.252][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.253][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.254][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.255][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:37.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.271][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2023-10-14 11:05:37.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:37.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:37.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:37.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:37.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:37.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:37.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:37.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.296][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.297][private$selectFields]
biodb.TRACE[2023-10-14 11:05:37.298][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:37.299][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:37.300][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.302][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.303][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.304][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.305][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.306][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.308][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.309][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.310][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.311][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.312][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.313][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.315][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.316][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.317][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.318][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:37.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.334][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-10-14 11:05:37.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:37.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:37.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:37.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:37.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:37.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:37.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:37.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.359][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.360][private$selectFields]
biodb.TRACE[2023-10-14 11:05:37.361][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:37.362][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:37.363][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.365][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.366][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.367][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.368][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.369][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.371][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.372][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.373][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.374][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.375][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.377][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.378][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.379][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.380][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.381][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:37.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.397][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2023-10-14 11:05:37.399][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:05:37.400][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:05:37.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:37.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:37.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:37.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:37.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:37.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:37.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:37.423][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:37.427][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:05:37.429][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2023-10-14 11:05:37.430][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:05:37.432][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2023-10-14 11:05:37.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:37.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:37.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:37.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:37.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:37.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:37.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:37.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:37.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:37.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:37.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:37.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:37.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:37.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:37.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:37.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:37.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:37.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:37.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:37.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:37.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:37.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:37.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:37.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:37.520][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:05:37.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:37.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:37.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:37.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:37.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:37.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:37.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:37.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.544][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.545][private$selectFields]
biodb.TRACE[2023-10-14 11:05:37.546][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:37.548][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:37.549][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.550][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.551][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.552][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.553][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.554][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.556][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.557][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.558][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.559][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.560][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.561][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.563][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.564][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.565][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.566][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:37.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.582][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2023-10-14 11:05:37.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:37.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:37.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:37.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:37.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:37.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:37.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:37.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.607][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.608][private$selectFields]
biodb.TRACE[2023-10-14 11:05:37.609][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:37.610][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:37.611][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.613][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.614][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.615][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.616][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.617][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.619][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.620][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.621][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.622][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.623][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.624][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.626][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.627][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.628][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.629][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:37.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.645][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2023-10-14 11:05:37.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:37.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:37.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:37.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:37.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:37.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:37.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:37.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.670][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.671][private$selectFields]
biodb.TRACE[2023-10-14 11:05:37.672][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:37.673][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:37.674][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.676][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.677][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.678][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.679][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.680][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.682][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.683][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.684][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.685][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.686][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.687][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.689][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.690][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.691][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.692][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:37.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.708][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2023-10-14 11:05:37.709][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:05:37.711][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:05:37.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:37.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:37.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:37.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:37.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:37.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:37.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:37.729][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:37.733][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:05:37.735][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2023-10-14 11:05:37.737][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:05:37.738][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2023-10-14 11:05:37.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:37.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:37.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:37.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:37.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:37.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:37.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:37.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:37.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:37.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:37.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:37.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:37.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:37.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:37.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:37.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:37.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:37.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:37.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:37.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:37.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:37.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:37.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:37.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:37.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:37.833][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:05:37.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:37.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:37.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:37.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:37.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:37.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:37.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:37.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.858][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.859][private$selectFields]
biodb.TRACE[2023-10-14 11:05:37.861][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:37.862][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:37.863][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.864][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.865][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.866][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.868][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.869][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.870][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.871][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.872][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.873][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.875][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.876][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.877][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.878][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.879][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.880][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:37.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.896][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2023-10-14 11:05:37.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:37.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:37.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:37.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:37.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:37.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:37.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:37.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.920][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.921][private$selectFields]
biodb.TRACE[2023-10-14 11:05:37.923][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:37.924][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:37.925][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.926][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.927][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.928][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.929][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.931][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.932][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.933][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.934][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.935][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.936][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.939][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.940][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.941][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.942][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:37.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.958][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2023-10-14 11:05:37.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:37.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:37.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:37.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:37.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:37.970][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:37.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:37.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.982][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.983][private$selectFields]
biodb.TRACE[2023-10-14 11:05:37.984][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:37.985][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:37.986][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.987][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.989][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.990][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.991][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.992][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.993][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:37.994][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:37.995][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:37.997][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.998][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:37.999][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:38.000][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:38.001][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:38.002][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:38.004][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:38.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:38.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:38.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:38.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:38.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:38.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:38.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:38.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:38.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:38.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:38.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:38.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:38.019][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2023-10-14 11:05:38.020][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:05:38.021][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-10-14 11:05:38.049][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-10-14 11:05:38.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-10-14 11:05:38.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:38.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:38.054][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-10-14 11:05:38.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-10-14 11:05:38.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:38.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:38.058][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-10-14 11:05:38.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-10-14 11:05:38.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:38.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:38.067][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:38.069][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:38.070][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:38.071][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:38.072][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:38.073][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:38.074][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:38.075][ef$get] fields variable is a list.
biodb.INFO [2023-10-14 11:05:38.077][biodb::testThat]
biodb.INFO [2023-10-14 11:05:38.078][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2023-10-14 11:05:38.079][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:05:38.080][biodb::testThat]
biodb.TRACE[2023-10-14 11:05:38.084][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-10-14 11:05:38.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-10-14 11:05:38.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:38.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:38.089][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-10-14 11:05:38.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-10-14 11:05:38.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:38.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:38.094][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-10-14 11:05:38.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-10-14 11:05:38.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:38.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:38.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:38.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:38.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:38.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:38.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:38.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:38.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:38.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:38.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:38.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:38.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:38.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:38.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:38.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:38.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:38.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:38.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:38.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:38.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:38.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:38.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:38.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:38.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:38.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:38.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:38.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:38.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:38.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:38.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:38.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:38.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:38.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:38.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:38.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:38.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:38.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:38.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:38.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:38.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:38.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:38.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:38.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:38.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:38.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:38.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:38.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:38.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:38.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:38.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:38.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:38.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:38.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:38.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:38.173][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:38.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:38.178][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:38.182][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:38.183][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:38.185][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2023-10-14 11:05:38.841][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2023-10-14 11:05:39.574][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:39.577][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content"
biodb.TRACE[2023-10-14 11:05:39.581][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.request"
biodb.DEBUG[2023-10-14 11:05:39.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:39.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:39.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:39.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:39.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:39.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:39.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:39.601][private$loadEntries] Creating entries from ids [1]: "3014".
biodb.DEBUG[2023-10-14 11:05:39.602][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:05:39.604][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3014".
biodb.TRACE[2023-10-14 11:05:39.605][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:05:39.606][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:05:39.607][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:05:39.609][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:05:39.610][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:05:39.611][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:05:39.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:39.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:39.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:39.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:39.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:39.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:39.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:39.628][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.DEBUG[2023-10-14 11:05:39.631][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:39.632][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:39.634][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.TRACE[2023-10-14 11:05:40.272][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014).
biodb.DEBUG[2023-10-14 11:05:40.928][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:40.930][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.content"
biodb.TRACE[2023-10-14 11:05:40.934][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.request"
biodb.TRACE[2023-10-14 11:05:40.937][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3014.xml"
biodb.DEBUG[2023-10-14 11:05:40.939][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:05:40.941][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:05:40.942][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:05:40.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:40.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:40.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:40.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:40.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:40.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:40.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:40.959][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:40.960][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:40.961][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:40.962][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:40.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:40.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:40.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:40.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:40.968][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:40.969][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:40.970][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:40.971][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:40.973][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:40.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:40.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:40.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:40.978][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:40.979][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:40.980][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:40.981][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:40.983][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:40.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:40.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:40.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:40.988][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:40.989][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:40.990][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:40.991][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:40.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:40.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:40.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:40.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:40.997][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:40.998][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:41.000][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:41.001][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:41.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:41.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:41.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:41.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:41.007][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:41.008][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:41.009][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:41.010][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:41.012][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:41.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:41.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:41.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:41.016][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:41.018][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:41.019][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:41.020][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:41.021][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:41.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:41.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:41.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:41.026][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:41.027][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:41.028][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:41.030][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:41.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:41.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:41.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:41.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:41.036][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:41.037][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:41.038][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:41.039][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:41.041][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:41.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:41.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:41.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:41.046][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:41.047][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:41.048][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:41.049][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:41.050][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:41.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:41.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:41.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:41.055][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:41.056][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:41.058][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:41.059][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:41.060][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:41.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:41.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:41.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:41.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:41.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:41.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:41.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:41.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:41.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:41.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:41.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:41.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:41.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:41.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:41.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:41.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:41.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:41.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:41.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:41.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:41.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:41.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:41.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:41.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:41.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:41.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:41.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:41.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:41.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:41.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:41.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:41.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:41.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:41.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:41.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:41.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:41.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:41.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:41.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:41.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:41.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:41.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:41.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:41.113][self$createEntryFromContent] Accession numbers: 3014.
biodb.TRACE[2023-10-14 11:05:41.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:41.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:41.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:41.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:41.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:41.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:41.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:41.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:41.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:41.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:41.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:41.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:41.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:41.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:41.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:41.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:41.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:41.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:41.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:41.153][private$loadEntries] Creating entries from ids [1]: "7567".
biodb.DEBUG[2023-10-14 11:05:41.154][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:05:41.156][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7567".
biodb.TRACE[2023-10-14 11:05:41.157][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:05:41.159][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:05:41.160][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:05:41.161][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:05:41.162][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:05:41.163][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:05:41.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:41.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:41.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:41.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:41.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:41.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:41.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:41.180][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.DEBUG[2023-10-14 11:05:41.183][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:41.184][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:41.186][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.TRACE[2023-10-14 11:05:41.869][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567).
biodb.DEBUG[2023-10-14 11:05:42.533][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:42.535][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.content"
biodb.TRACE[2023-10-14 11:05:42.539][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.request"
biodb.TRACE[2023-10-14 11:05:42.542][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7567.xml"
biodb.DEBUG[2023-10-14 11:05:42.544][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:05:42.545][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:05:42.547][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:05:42.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:42.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:42.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:42.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:42.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:42.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:42.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:42.564][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:42.565][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:42.566][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.567][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:42.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:42.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.574][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:42.575][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:42.576][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.577][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.579][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:42.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:42.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.583][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:42.585][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:42.586][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.587][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.588][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:42.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:42.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.593][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:42.594][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:42.595][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.597][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:42.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:42.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.603][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:42.604][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:42.605][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.606][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:42.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:42.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.613][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:42.614][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:42.615][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.616][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.617][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:42.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:42.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.622][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:42.624][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:42.625][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.626][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.627][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:42.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:42.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.632][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:42.633][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:42.634][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.635][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:42.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:42.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.642][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:42.643][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:42.644][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.645][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.647][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:42.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:42.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.652][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:42.653][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:42.654][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.655][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.657][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:42.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:42.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.662][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:42.663][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:42.664][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.665][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.667][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:42.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:42.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:42.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:42.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:42.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:42.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:42.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:42.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:42.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:42.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:42.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:42.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:42.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:42.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:42.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:42.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:42.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:42.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:42.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:42.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:42.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:42.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:42.719][self$createEntryFromContent] Accession numbers: 7567.
biodb.TRACE[2023-10-14 11:05:42.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:42.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:42.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:42.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:42.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:42.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:42.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:42.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:42.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:42.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:42.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:42.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:42.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:42.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:42.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:42.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:42.749][private$loadEntries] Creating entries from ids [1]: "8021".
biodb.DEBUG[2023-10-14 11:05:42.750][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:05:42.752][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8021".
biodb.TRACE[2023-10-14 11:05:42.753][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:05:42.755][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:05:42.756][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:05:42.757][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:05:42.759][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:05:42.760][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:05:42.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:42.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:42.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:42.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:42.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:42.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:42.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:42.777][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.DEBUG[2023-10-14 11:05:42.781][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:42.782][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:42.784][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.TRACE[2023-10-14 11:05:43.428][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021).
biodb.DEBUG[2023-10-14 11:05:44.119][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:44.122][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.content"
biodb.TRACE[2023-10-14 11:05:44.126][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.request"
biodb.TRACE[2023-10-14 11:05:44.129][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8021.xml"
biodb.DEBUG[2023-10-14 11:05:44.131][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:05:44.133][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:05:44.134][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:05:44.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:44.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:44.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:44.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:44.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:44.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:44.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:44.152][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:44.153][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:44.155][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.156][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:44.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:44.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.162][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:44.163][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:44.165][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.166][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.167][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:44.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:44.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.172][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:44.174][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:44.175][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.176][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.188][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:44.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:44.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.194][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:44.196][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:44.197][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.198][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:44.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:44.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.205][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:44.206][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:44.207][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.209][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.210][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:44.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:44.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.215][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:44.216][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:44.217][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.218][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.220][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:44.221][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:44.222][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.223][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.225][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:44.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:44.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.229][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:44.231][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:44.232][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.233][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:44.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:44.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.239][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:44.240][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:44.241][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.242][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.244][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:44.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:44.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.249][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:44.250][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:44.251][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.252][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.254][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:44.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:44.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.258][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:44.260][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:44.261][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.262][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.263][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:44.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:44.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:44.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:44.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:44.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:44.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:44.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:44.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:44.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:44.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:44.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:44.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:44.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:44.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:44.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:44.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:44.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:44.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:44.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:44.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:44.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:44.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:44.316][self$createEntryFromContent] Accession numbers: 8021.
biodb.TRACE[2023-10-14 11:05:44.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:44.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:44.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:44.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:44.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:44.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:44.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:44.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:44.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:44.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:44.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:44.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:44.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:44.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:44.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:44.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:44.345][private$loadEntries] Creating entries from ids [1]: "30382".
biodb.DEBUG[2023-10-14 11:05:44.346][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:05:44.348][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30382".
biodb.TRACE[2023-10-14 11:05:44.350][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:05:44.351][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:05:44.352][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:05:44.354][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:05:44.355][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:05:44.356][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:05:44.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:44.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:44.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:44.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:44.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:44.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:44.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:44.375][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.DEBUG[2023-10-14 11:05:44.378][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:44.379][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:44.381][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.TRACE[2023-10-14 11:05:44.998][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382).
biodb.DEBUG[2023-10-14 11:05:45.652][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:45.655][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.content"
biodb.TRACE[2023-10-14 11:05:45.660][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.request"
biodb.TRACE[2023-10-14 11:05:45.664][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30382.xml"
biodb.DEBUG[2023-10-14 11:05:45.666][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:05:45.668][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:05:45.669][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:05:45.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:45.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:45.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:45.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:45.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:45.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:45.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:45.688][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:45.689][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:45.690][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.692][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:45.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:45.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.699][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:45.700][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:45.701][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.703][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.704][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:45.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:45.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.710][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:45.712][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:45.713][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.714][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.716][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:45.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:45.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.721][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:45.722][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:45.723][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.725][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:45.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:45.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.731][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:45.732][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:45.733][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.735][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:45.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:45.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.741][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:45.743][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:45.744][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.745][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.747][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:45.748][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:45.749][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.751][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.752][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:45.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:45.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.757][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:45.759][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:45.760][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.761][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:45.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:45.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.768][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:45.769][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:45.770][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.771][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.773][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:45.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:45.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.778][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:45.779][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:45.781][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.782][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.783][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:45.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:45.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.788][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:45.790][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:45.791][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.792][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.793][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:45.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:45.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:45.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:45.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:45.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:45.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:45.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:45.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:45.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:45.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:45.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:45.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:45.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:45.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:45.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:45.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:45.856][self$createEntryFromContent] Accession numbers: 30382.
biodb.TRACE[2023-10-14 11:05:45.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:45.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:45.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:45.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:45.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:45.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:45.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:45.871][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:05:45.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:45.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:45.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:45.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:45.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:45.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:45.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:45.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.896][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:45.898][private$selectFields]
biodb.TRACE[2023-10-14 11:05:45.899][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:45.900][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:45.901][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:45.902][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.903][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.905][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.906][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.907][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.908][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.909][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.910][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.912][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:45.913][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:45.914][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.915][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.916][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.917][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.918][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:45.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.934][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2023-10-14 11:05:45.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:45.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:45.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:45.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:45.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:45.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:45.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:45.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.959][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:45.960][private$selectFields]
biodb.TRACE[2023-10-14 11:05:45.961][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:45.962][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:45.963][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:45.964][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.966][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.967][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.968][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.969][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.970][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.971][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.972][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.974][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:45.975][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:45.976][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.977][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.978][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.979][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.981][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:45.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:45.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:45.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:45.997][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2023-10-14 11:05:45.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:45.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:46.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:46.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:46.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:46.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:46.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:46.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:46.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:46.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:46.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:46.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:46.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:46.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:46.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:46.021][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:46.023][private$selectFields]
biodb.TRACE[2023-10-14 11:05:46.024][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:46.025][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:46.026][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:46.027][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:46.028][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:46.030][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:46.031][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:46.032][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:46.033][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:46.034][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:46.035][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:46.036][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:46.038][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:46.039][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:46.040][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:46.041][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:46.042][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:46.044][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:46.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:46.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:46.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:46.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:46.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:46.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:46.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:46.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:46.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:46.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:46.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:46.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:46.060][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2023-10-14 11:05:46.061][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:05:46.062][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:05:46.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:46.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:46.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:46.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:46.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:46.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:46.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:46.080][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:46.084][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:46.085][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:46.087][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2023-10-14 11:05:46.731][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2023-10-14 11:05:47.370][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:47.373][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content"
biodb.TRACE[2023-10-14 11:05:47.378][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.request"
biodb.DEBUG[2023-10-14 11:05:47.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:47.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:47.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:47.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:47.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:47.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:47.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:47.397][private$loadEntries] Creating entries from ids [1]: "9710".
biodb.DEBUG[2023-10-14 11:05:47.398][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:05:47.400][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9710".
biodb.TRACE[2023-10-14 11:05:47.402][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:05:47.404][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:05:47.406][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:05:47.408][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:05:47.410][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:05:47.412][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:05:47.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:47.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:47.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:47.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:47.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:47.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:47.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:47.436][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.DEBUG[2023-10-14 11:05:47.439][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:47.441][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:47.442][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.TRACE[2023-10-14 11:05:48.105][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710).
biodb.DEBUG[2023-10-14 11:05:48.713][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:48.716][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.content"
biodb.TRACE[2023-10-14 11:05:48.720][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.request"
biodb.TRACE[2023-10-14 11:05:48.723][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9710.xml"
biodb.DEBUG[2023-10-14 11:05:48.725][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:05:48.727][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:05:48.728][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:05:48.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:48.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:48.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:48.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:48.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:48.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:48.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:48.756][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:48.757][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:48.758][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.759][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:48.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:48.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.765][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:48.767][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:48.768][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.769][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.770][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:48.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:48.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.775][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:48.776][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:48.777][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.778][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.780][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:48.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:48.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.785][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:48.786][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:48.787][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.788][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:48.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:48.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.794][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:48.795][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:48.796][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.798][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:48.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:48.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.804][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:48.805][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:48.806][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.807][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.809][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:48.810][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:48.811][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.812][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.813][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:48.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:48.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.818][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:48.819][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:48.820][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.822][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:48.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:48.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.828][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:48.829][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:48.830][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.831][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.833][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:48.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:48.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.838][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:48.839][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:48.840][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.841][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.842][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:48.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:48.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.847][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:48.849][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:48.850][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.851][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.852][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:48.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:48.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:48.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:48.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:48.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:48.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:48.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:48.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:48.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:48.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:48.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:48.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:48.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:48.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:48.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:48.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:48.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:48.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:48.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:48.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:48.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:48.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:48.907][self$createEntryFromContent] Accession numbers: 9710.
biodb.TRACE[2023-10-14 11:05:48.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:48.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:48.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:48.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:48.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:48.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:48.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:48.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:48.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:48.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:48.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:48.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:48.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:48.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:48.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:48.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:48.938][private$loadEntries] Creating entries from ids [1]: "65530".
biodb.DEBUG[2023-10-14 11:05:48.939][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:05:48.941][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65530".
biodb.TRACE[2023-10-14 11:05:48.943][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:05:48.944][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:05:48.946][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:05:48.947][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:05:48.948][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:05:48.949][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:05:48.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:48.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:48.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:48.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:48.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:48.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:48.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:48.966][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.DEBUG[2023-10-14 11:05:48.970][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:48.971][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:48.973][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.TRACE[2023-10-14 11:05:49.583][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530).
biodb.DEBUG[2023-10-14 11:05:50.200][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:50.203][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.content"
biodb.TRACE[2023-10-14 11:05:50.207][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.request"
biodb.TRACE[2023-10-14 11:05:50.210][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65530.xml"
biodb.DEBUG[2023-10-14 11:05:50.212][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:05:50.213][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:05:50.215][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:05:50.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:50.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:50.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:50.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:50.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:50.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:50.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:50.233][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:50.234][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:50.235][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.236][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:50.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:50.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.243][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:50.244][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:50.245][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.246][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.248][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:50.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:50.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.253][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:50.254][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:50.256][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.257][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.258][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:50.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:50.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.263][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:50.265][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:50.266][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.267][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:50.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:50.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.273][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:50.275][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:50.276][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.277][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:50.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:50.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.283][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:50.285][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:50.286][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.287][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.288][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:50.290][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:50.291][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.292][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.293][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:50.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:50.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.298][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:50.300][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:50.301][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.302][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:50.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:50.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.309][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:50.310][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:50.311][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.312][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.314][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:50.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:50.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.319][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:50.320][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:50.321][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.322][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.324][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:50.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:50.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.329][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:50.330][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:50.331][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.338][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.343][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:50.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:50.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:50.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:50.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:50.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:50.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:50.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:50.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:50.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:50.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:50.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:50.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:50.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:50.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:50.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:50.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:50.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:50.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:50.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:50.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:50.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:50.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:50.396][self$createEntryFromContent] Accession numbers: 65530.
biodb.TRACE[2023-10-14 11:05:50.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:50.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:50.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:50.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:50.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:50.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:50.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:50.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:50.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:50.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:50.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:50.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:50.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:50.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:50.423][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:50.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:50.425][private$loadEntries] Creating entries from ids [1]: "72338".
biodb.DEBUG[2023-10-14 11:05:50.426][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:05:50.428][cch$loadFileContent] Trying to load 1 files from cache: [1]: "72338".
biodb.TRACE[2023-10-14 11:05:50.430][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:05:50.431][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:05:50.432][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:05:50.434][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:05:50.435][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:05:50.436][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:05:50.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:50.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:50.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:50.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:50.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:50.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:50.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:50.453][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.DEBUG[2023-10-14 11:05:50.456][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:50.458][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:50.459][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.TRACE[2023-10-14 11:05:51.122][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338).
biodb.DEBUG[2023-10-14 11:05:51.770][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:51.773][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.content"
biodb.TRACE[2023-10-14 11:05:51.777][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.request"
biodb.TRACE[2023-10-14 11:05:51.781][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/72338.xml"
biodb.DEBUG[2023-10-14 11:05:51.782][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:05:51.784][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:05:51.785][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:05:51.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:51.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:51.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:51.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:51.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:51.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:51.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:51.802][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:51.804][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:51.805][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.806][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:51.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:51.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.812][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:51.813][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:51.815][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.816][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.817][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:51.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:51.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.822][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:51.823][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:51.824][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.826][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.827][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:51.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:51.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.832][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:51.833][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:51.834][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.835][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:51.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:51.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.842][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:51.843][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:51.844][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.845][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:51.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:51.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.852][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:51.853][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:51.854][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.855][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.857][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:51.858][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:51.859][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.860][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.862][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:51.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:51.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.866][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:51.868][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:51.869][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.870][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:51.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:51.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.876][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:51.878][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:51.879][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.880][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.882][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:51.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:51.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.886][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:51.888][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:51.889][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.890][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.891][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:51.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:51.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.896][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:51.898][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:51.899][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.900][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.901][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:51.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:51.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:51.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:51.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:51.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:51.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:51.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:51.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:51.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:51.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:51.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:51.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:51.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:51.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:51.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:51.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:51.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:51.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:51.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:51.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:51.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:51.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:51.954][self$createEntryFromContent] Accession numbers: 72338.
biodb.TRACE[2023-10-14 11:05:51.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:51.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:51.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:51.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:51.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:51.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:51.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:51.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:51.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:51.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:51.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:51.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:51.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:51.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:51.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:51.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:51.983][private$loadEntries] Creating entries from ids [1]: "77926".
biodb.DEBUG[2023-10-14 11:05:51.985][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:05:51.986][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77926".
biodb.TRACE[2023-10-14 11:05:51.988][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:05:51.989][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:05:51.991][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:05:51.992][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:05:51.993][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:05:51.994][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:05:51.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:51.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:51.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:52.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:52.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:52.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:52.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:52.020][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.DEBUG[2023-10-14 11:05:52.023][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:52.024][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:52.026][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.TRACE[2023-10-14 11:05:52.673][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926).
biodb.DEBUG[2023-10-14 11:05:53.236][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:53.238][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.content"
biodb.TRACE[2023-10-14 11:05:53.242][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.request"
biodb.TRACE[2023-10-14 11:05:53.245][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77926.xml"
biodb.DEBUG[2023-10-14 11:05:53.247][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:05:53.249][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:05:53.250][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:05:53.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:53.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:53.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:53.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:53.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:53.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:53.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:53.267][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:53.268][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:53.269][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.270][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:53.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:53.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.276][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:53.278][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:53.279][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.280][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.281][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:53.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:53.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.286][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:53.287][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:53.288][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.290][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.291][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:53.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:53.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.296][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:53.297][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:53.298][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.299][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:53.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:53.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.306][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:53.307][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:53.308][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.309][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:53.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:53.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.316][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:53.317][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:53.318][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.319][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.321][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:53.322][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:53.323][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.324][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.325][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:53.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:53.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.330][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:53.331][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:53.333][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.334][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:53.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:53.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.340][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:53.341][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:53.342][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.343][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.345][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:53.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:53.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.350][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:53.351][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:53.352][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.353][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.355][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:53.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:53.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.360][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:53.361][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:53.362][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.363][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.365][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:53.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:53.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:53.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:53.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:53.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:53.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:53.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:53.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:53.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:53.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:53.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:53.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:53.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:53.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:53.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:53.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:53.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:53.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:53.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:53.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:53.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:53.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:53.417][self$createEntryFromContent] Accession numbers: 77926.
biodb.TRACE[2023-10-14 11:05:53.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:53.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:53.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:53.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:53.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:53.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:53.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:53.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:53.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:53.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:53.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:53.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:53.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:53.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:53.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:53.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:53.447][private$loadEntries] Creating entries from ids [1]: "82369".
biodb.DEBUG[2023-10-14 11:05:53.449][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:05:53.451][cch$loadFileContent] Trying to load 1 files from cache: [1]: "82369".
biodb.TRACE[2023-10-14 11:05:53.452][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:05:53.453][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:05:53.455][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:05:53.456][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:05:53.457][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:05:53.458][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:05:53.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:53.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:53.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:53.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:53.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:53.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:53.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:53.477][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.DEBUG[2023-10-14 11:05:53.480][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:53.482][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:53.483][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.TRACE[2023-10-14 11:05:54.208][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369).
biodb.DEBUG[2023-10-14 11:05:54.736][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:54.739][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.content"
biodb.TRACE[2023-10-14 11:05:54.744][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.request"
biodb.TRACE[2023-10-14 11:05:54.747][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/82369.xml"
biodb.DEBUG[2023-10-14 11:05:54.749][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:05:54.750][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:05:54.752][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:05:54.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:54.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:54.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:54.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:54.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:54.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:54.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:54.769][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:54.771][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:54.772][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.773][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:54.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:54.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.780][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:54.781][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:54.782][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.783][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.785][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:54.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:54.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.790][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:54.791][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:54.792][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.793][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.795][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:54.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:54.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.800][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:54.801][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:54.802][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.803][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:54.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:54.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.809][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:54.811][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:54.812][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.813][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:54.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:54.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.819][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:54.826][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:54.833][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.834][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.836][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:54.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:54.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.841][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:54.842][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:54.843][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.845][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.846][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:54.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:54.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.851][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:54.852][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:54.853][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.855][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:54.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:54.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.861][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:54.862][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:54.863][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.865][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.866][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:54.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:54.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.871][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:54.873][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:54.874][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.875][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.876][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:54.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:54.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.881][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:54.882][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:54.883][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.885][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.886][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:54.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:54.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:54.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:54.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:54.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:54.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:54.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:54.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:54.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:54.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:54.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:54.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:54.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:54.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:54.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:54.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:54.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:54.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:54.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:54.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:54.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:54.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:54.938][self$createEntryFromContent] Accession numbers: 82369.
biodb.TRACE[2023-10-14 11:05:54.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:54.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:54.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:54.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:54.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:54.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:54.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:54.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:54.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:54.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:54.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:54.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:54.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:54.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:54.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:54.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:54.968][private$loadEntries] Creating entries from ids [1]: "90204".
biodb.DEBUG[2023-10-14 11:05:54.969][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:05:54.971][cch$loadFileContent] Trying to load 1 files from cache: [1]: "90204".
biodb.TRACE[2023-10-14 11:05:54.972][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:05:54.973][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:05:54.975][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:05:54.976][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:05:54.977][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:05:54.978][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:05:54.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:54.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:54.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:54.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:54.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:54.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:54.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:54.999][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.DEBUG[2023-10-14 11:05:55.004][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:55.005][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:55.006][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.TRACE[2023-10-14 11:05:55.608][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204).
biodb.DEBUG[2023-10-14 11:05:56.317][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:56.320][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.content"
biodb.TRACE[2023-10-14 11:05:56.325][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.request"
biodb.TRACE[2023-10-14 11:05:56.328][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90204.xml"
biodb.DEBUG[2023-10-14 11:05:56.330][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:05:56.332][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:05:56.333][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:05:56.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:56.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:56.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:56.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:56.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:56.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:56.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:56.353][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:56.354][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:56.356][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.357][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:56.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:56.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.364][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:56.366][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:56.367][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.368][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.370][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:56.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:56.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.375][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:56.376][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:56.377][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.378][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.380][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:56.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:56.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.385][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:56.386][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:56.387][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.388][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:56.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:56.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.395][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:56.397][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:56.398][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.399][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:56.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:56.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.406][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:56.408][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:56.409][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.410][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.411][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:56.413][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:56.414][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.415][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.416][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:56.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:56.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.421][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:56.422][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:56.424][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.425][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:56.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:56.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.431][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:56.432][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:56.433][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.434][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.436][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:56.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:56.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.441][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:56.442][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:56.443][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.444][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.446][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:56.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:56.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.451][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:56.452][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:56.453][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.454][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.456][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:56.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:56.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:56.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:56.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:56.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:56.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:56.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:56.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:56.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:56.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:56.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:56.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:56.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:56.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:56.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:56.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:56.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:56.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:56.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:56.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:56.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:56.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:56.535][self$createEntryFromContent] Accession numbers: 90204.
biodb.TRACE[2023-10-14 11:05:56.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:56.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:56.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:56.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:56.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:56.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:56.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:56.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:56.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:56.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:56.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:56.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:56.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:56.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:56.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:56.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:56.564][private$loadEntries] Creating entries from ids [1]: "132793".
biodb.DEBUG[2023-10-14 11:05:56.565][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:05:56.566][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132793".
biodb.TRACE[2023-10-14 11:05:56.568][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:05:56.570][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:05:56.571][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:05:56.572][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:05:56.573][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:05:56.575][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:05:56.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:56.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:56.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:56.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:56.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:56.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:56.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:56.592][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.DEBUG[2023-10-14 11:05:56.595][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:56.596][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:56.598][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.TRACE[2023-10-14 11:05:57.299][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793).
biodb.DEBUG[2023-10-14 11:05:57.989][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:57.991][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.content"
biodb.TRACE[2023-10-14 11:05:57.996][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.request"
biodb.TRACE[2023-10-14 11:05:57.999][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132793.xml"
biodb.DEBUG[2023-10-14 11:05:58.000][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:05:58.002][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:05:58.003][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:05:58.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:58.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:58.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:58.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:58.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:58.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:58.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:58.020][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:58.021][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:58.022][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.023][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:58.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:58.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.030][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:58.031][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:58.032][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.033][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.034][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:05:58.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:05:58.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.039][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:58.040][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:58.042][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.043][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.044][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:05:58.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:05:58.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.049][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:58.050][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:58.051][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.052][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:05:58.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:05:58.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.058][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:58.060][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:58.061][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.062][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:05:58.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:05:58.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.068][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:58.070][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:58.071][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.072][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.073][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:58.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:05:58.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.078][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:58.079][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:58.080][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.082][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.083][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:05:58.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:58.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.088][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:58.089][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:58.090][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.092][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:58.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:05:58.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.098][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:58.099][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:58.100][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.102][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.104][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:05:58.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:05:58.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.109][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:58.111][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:58.112][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.113][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.115][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:05:58.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:05:58.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.121][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:58.122][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:58.123][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.124][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.126][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:05:58.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:05:58.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:58.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:58.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:58.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:58.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:58.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:58.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:58.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:58.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:58.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:58.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:58.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:58.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:05:58.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:05:58.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:58.179][self$createEntryFromContent] Accession numbers: 132793.
biodb.TRACE[2023-10-14 11:05:58.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:58.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:58.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:58.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:58.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:58.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:05:58.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:05:58.195][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:05:58.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:58.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:58.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:58.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:58.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:58.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:58.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:58.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.220][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:58.222][private$selectFields]
biodb.TRACE[2023-10-14 11:05:58.223][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:58.224][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:58.226][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:58.227][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.229][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.230][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.231][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.233][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.234][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.236][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.237][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.238][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:58.240][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:58.241][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.243][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.244][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.245][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.247][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:58.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.265][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2023-10-14 11:05:58.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:58.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:58.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:58.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:58.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:58.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:58.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:58.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.310][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:58.311][private$selectFields]
biodb.TRACE[2023-10-14 11:05:58.312][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:58.313][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:58.314][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:58.315][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.318][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.319][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.320][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.321][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.322][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.323][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.325][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:58.326][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:58.327][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.328][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.329][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.330][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.332][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:58.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.347][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2023-10-14 11:05:58.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:58.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:58.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:58.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:58.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:58.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:58.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:05:58.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.373][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:58.374][private$selectFields]
biodb.TRACE[2023-10-14 11:05:58.375][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:05:58.376][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:05:58.377][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:58.378][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.380][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.381][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.384][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.385][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.386][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.387][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.391][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.392][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:58.393][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:05:58.394][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.395][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.396][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.398][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.399][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:05:58.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:05:58.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:05:58.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:05:58.414][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2023-10-14 11:05:58.416][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:05:58.417][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:05:58.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:58.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:58.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:58.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:58.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:58.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:58.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:58.434][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:05:58.438][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:05:58.439][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:05:58.442][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2023-10-14 11:05:59.058][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2023-10-14 11:05:59.975][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:05:59.977][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content"
biodb.TRACE[2023-10-14 11:05:59.982][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.request"
biodb.DEBUG[2023-10-14 11:05:59.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:05:59.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:05:59.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:05:59.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:05:59.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:05:59.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:05:59.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:05:59.999][private$loadEntries] Creating entries from ids [1]: "131378".
biodb.DEBUG[2023-10-14 11:06:00.000][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:06:00.002][cch$loadFileContent] Trying to load 1 files from cache: [1]: "131378".
biodb.TRACE[2023-10-14 11:06:00.003][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:06:00.005][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:06:00.006][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:06:00.007][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:06:00.008][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:06:00.009][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:06:00.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:00.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:00.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:00.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:00.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:00.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:00.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:00.026][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.DEBUG[2023-10-14 11:06:00.030][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:00.031][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:00.033][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.TRACE[2023-10-14 11:06:00.744][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378).
biodb.DEBUG[2023-10-14 11:06:01.358][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:06:01.361][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.content"
biodb.TRACE[2023-10-14 11:06:01.419][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.request"
biodb.TRACE[2023-10-14 11:06:01.423][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/131378.xml"
biodb.DEBUG[2023-10-14 11:06:01.426][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:06:01.429][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:06:01.431][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:06:01.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:01.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:01.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:01.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:01.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:01.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:01.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:01.456][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:01.458][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:01.460][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.462][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:01.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:01.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.468][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:01.470][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:01.471][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.473][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.474][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:01.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:01.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.479][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:01.481][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:01.482][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.483][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.484][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:01.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:01.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.489][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:01.490][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:01.491][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.493][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:01.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:01.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.499][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:01.500][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:01.501][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.502][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:01.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:01.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.509][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:01.510][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:01.511][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.512][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.513][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:01.515][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:01.516][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.517][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.518][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:01.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:01.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.523][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:01.524][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:01.525][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.526][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:01.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:01.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.533][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:01.534][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:01.535][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.536][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.538][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:01.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:01.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.542][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:01.544][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:01.545][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.546][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.547][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:01.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:01.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.552][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:01.553][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:01.554][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.556][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.557][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:01.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:01.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:01.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:01.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:01.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:01.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:01.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:01.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:01.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:01.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:01.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:01.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:01.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:01.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:01.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:01.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:01.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:01.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:01.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:01.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:01.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:01.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:01.620][self$createEntryFromContent] Accession numbers: 131378.
biodb.TRACE[2023-10-14 11:06:01.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:01.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:01.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:01.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:01.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:01.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:01.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:01.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:01.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:01.636][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:01.640][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:01.642][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:01.644][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2023-10-14 11:06:02.605][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2023-10-14 11:06:03.272][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:06:03.274][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content"
biodb.TRACE[2023-10-14 11:06:03.280][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.request"
biodb.DEBUG[2023-10-14 11:06:03.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:03.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:03.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:03.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:03.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:03.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:03.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:03.297][private$loadEntries] Creating entries from ids [1]: "51836".
biodb.DEBUG[2023-10-14 11:06:03.298][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:06:03.301][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51836".
biodb.TRACE[2023-10-14 11:06:03.303][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:06:03.304][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:06:03.306][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:06:03.307][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:06:03.308][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:06:03.309][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:06:03.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:03.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:03.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:03.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:03.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:03.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:03.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:03.326][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.DEBUG[2023-10-14 11:06:03.330][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:03.331][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:03.332][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.TRACE[2023-10-14 11:06:03.971][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836).
biodb.DEBUG[2023-10-14 11:06:04.613][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:06:04.615][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.content"
biodb.TRACE[2023-10-14 11:06:04.620][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.request"
biodb.TRACE[2023-10-14 11:06:04.624][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51836.xml"
biodb.DEBUG[2023-10-14 11:06:04.626][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:06:04.628][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:06:04.629][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:06:04.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:04.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:04.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:04.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:04.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:04.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:04.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:04.647][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:04.648][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:04.650][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.651][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:04.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:04.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.657][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:04.658][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:04.660][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.661][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.662][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:04.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:04.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.667][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:04.669][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:04.670][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.671][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.673][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:04.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:04.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.678][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:04.679][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:04.680][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.681][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:04.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:04.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.688][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:04.689][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:04.690][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.691][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.693][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:04.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:04.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.698][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:04.699][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:04.700][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.702][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.703][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:04.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:04.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.708][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:04.709][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:04.711][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.712][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.713][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:04.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:04.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.718][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:04.720][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:04.721][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.722][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:04.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:04.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.728][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:04.730][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:04.731][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.732][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.733][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:04.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:04.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.738][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:04.740][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:04.741][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.742][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.743][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:04.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:04.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.748][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:04.749][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:04.750][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.752][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.753][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:04.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:04.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:04.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:04.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:04.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:04.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:04.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:04.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:04.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:04.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:04.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:04.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:04.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:04.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:04.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:04.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:04.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:04.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:04.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:04.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:04.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:04.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:04.805][self$createEntryFromContent] Accession numbers: 51836.
biodb.TRACE[2023-10-14 11:06:04.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:04.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:04.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:04.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:04.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:04.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:04.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:04.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:04.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:04.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:04.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:04.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:04.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:04.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:04.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:04.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:04.835][private$loadEntries] Creating entries from ids [1]: "51837".
biodb.DEBUG[2023-10-14 11:06:04.836][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:06:04.838][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51837".
biodb.TRACE[2023-10-14 11:06:04.839][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:06:04.840][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:06:04.842][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:06:04.843][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:06:04.844][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:06:04.845][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:06:04.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:04.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:04.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:04.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:04.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:04.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:04.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:04.874][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.DEBUG[2023-10-14 11:06:04.877][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:04.878][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:04.880][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.TRACE[2023-10-14 11:06:05.514][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837).
biodb.DEBUG[2023-10-14 11:06:06.154][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:06:06.157][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.content"
biodb.TRACE[2023-10-14 11:06:06.161][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.request"
biodb.TRACE[2023-10-14 11:06:06.164][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51837.xml"
biodb.DEBUG[2023-10-14 11:06:06.166][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:06:06.167][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:06:06.169][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:06:06.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:06.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:06.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:06.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:06.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:06.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:06.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:06.186][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:06.187][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:06.188][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.189][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:06.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:06.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.196][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:06.197][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:06.198][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.199][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.201][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:06.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:06.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.206][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:06.207][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:06.208][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.209][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.211][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:06.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:06.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.216][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:06.217][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:06.218][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.219][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:06.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:06.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.225][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:06.227][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:06.228][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.229][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:06.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:06.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.235][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:06.237][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:06.238][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.239][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.241][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:06.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:06.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.246][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:06.247][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:06.248][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.249][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.251][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:06.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:06.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.256][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:06.257][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:06.258][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.259][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:06.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:06.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.266][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:06.267][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:06.268][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.269][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.271][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:06.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:06.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.276][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:06.277][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:06.278][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.279][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.281][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:06.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:06.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.285][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:06.287][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:06.288][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.289][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.290][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:06.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:06.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:06.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:06.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:06.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:06.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:06.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:06.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:06.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:06.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:06.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:06.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:06.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:06.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:06.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:06.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:06.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:06.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:06.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:06.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:06.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:06.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:06.346][self$createEntryFromContent] Accession numbers: 51837.
biodb.TRACE[2023-10-14 11:06:06.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:06.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:06.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:06.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:06.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:06.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:06.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:06.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:06.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:06.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:06.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:06.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:06.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:06.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:06.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:06.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:06.378][private$loadEntries] Creating entries from ids [1]: "132205".
biodb.DEBUG[2023-10-14 11:06:06.379][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:06:06.381][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132205".
biodb.TRACE[2023-10-14 11:06:06.382][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:06:06.384][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:06:06.385][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:06:06.386][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:06:06.388][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:06:06.389][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:06:06.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:06.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:06.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:06.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:06.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:06.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:06.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:06.407][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.DEBUG[2023-10-14 11:06:06.410][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:06.411][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:06.413][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.TRACE[2023-10-14 11:06:06.989][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205).
biodb.DEBUG[2023-10-14 11:06:07.634][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:06:07.636][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.content"
biodb.TRACE[2023-10-14 11:06:07.641][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.request"
biodb.TRACE[2023-10-14 11:06:07.644][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132205.xml"
biodb.DEBUG[2023-10-14 11:06:07.645][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:06:07.647][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:06:07.648][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:06:07.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:07.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:07.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:07.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:07.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:07.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:07.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:07.665][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:07.666][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:07.667][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.668][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:07.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:07.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.674][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:07.675][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:07.676][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.677][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.679][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:07.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:07.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.683][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:07.685][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:07.686][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.687][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.688][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:07.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:07.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.693][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:07.694][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:07.695][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.696][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:07.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:07.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.702][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:07.704][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:07.705][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.716][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.718][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:07.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:07.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.723][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:07.724][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:07.725][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.726][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.728][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:07.729][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:07.730][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.731][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.733][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:07.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:07.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.737][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:07.739][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:07.740][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.741][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:07.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:07.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.747][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:07.748][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:07.749][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.750][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.752][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:07.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:07.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.756][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:07.758][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:07.759][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.760][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.761][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:07.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:07.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.766][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:07.767][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:07.768][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.769][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.771][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:07.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:07.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:07.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:07.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:07.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:07.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:07.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:07.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:07.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:07.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:07.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:07.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:07.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:07.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:07.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:07.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:07.821][self$createEntryFromContent] Accession numbers: 132205.
biodb.TRACE[2023-10-14 11:06:07.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:07.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:07.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:07.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:07.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:07.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:07.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:07.836][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:06:07.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:07.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:07.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:07.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:07.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:07.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:07.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:07.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.860][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:07.861][private$selectFields]
biodb.TRACE[2023-10-14 11:06:07.863][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:07.864][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:07.865][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:07.866][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.867][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.868][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.869][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.871][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.872][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.873][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.874][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.875][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:07.876][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:07.877][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.879][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.880][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.881][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.882][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:07.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.898][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2023-10-14 11:06:07.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:07.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:07.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:07.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:07.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:07.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:07.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:07.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.923][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:07.925][private$selectFields]
biodb.TRACE[2023-10-14 11:06:07.926][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:07.927][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:07.928][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:07.929][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.930][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.932][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.933][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.934][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.935][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.937][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.938][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.939][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:07.940][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:07.941][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.944][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.945][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.946][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:07.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.962][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2023-10-14 11:06:07.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:07.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:07.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:07.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:07.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:07.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:07.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:07.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.987][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:07.988][private$selectFields]
biodb.TRACE[2023-10-14 11:06:07.989][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:07.990][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:07.991][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:07.992][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.994][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.995][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:07.996][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:07.997][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.998][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:07.999][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.000][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.002][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:08.003][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:08.004][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.005][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.006][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.007][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.009][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:08.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.024][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2023-10-14 11:06:08.026][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:06:08.027][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:06:08.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:08.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:08.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:08.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:08.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:08.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:08.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:08.077][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:08.081][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:06:08.082][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2023-10-14 11:06:08.084][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:06:08.085][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2023-10-14 11:06:08.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:08.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:08.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:08.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:08.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:08.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:08.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:08.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:08.117][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:08.121][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:06:08.122][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2023-10-14 11:06:08.124][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:06:08.125][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2023-10-14 11:06:08.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:08.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:08.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:08.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:08.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:08.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:08.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:08.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:08.157][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:08.161][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:06:08.163][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2023-10-14 11:06:08.165][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:06:08.166][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2023-10-14 11:06:08.169][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:06:08.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:08.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:08.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:08.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:08.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:08.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:08.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:08.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.194][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:08.195][private$selectFields]
biodb.TRACE[2023-10-14 11:06:08.196][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:08.197][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:08.198][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:08.200][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.201][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.202][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.203][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.204][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.206][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.207][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.208][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.209][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:08.211][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:08.212][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.213][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.214][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.215][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.216][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:08.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.232][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2023-10-14 11:06:08.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:08.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:08.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:08.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:08.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:08.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:08.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:08.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.257][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:08.258][private$selectFields]
biodb.TRACE[2023-10-14 11:06:08.259][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:08.261][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:08.262][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:08.263][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.264][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.265][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.266][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.268][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.269][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.270][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.272][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.273][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:08.274][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:08.275][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.276][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.277][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.279][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.280][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:08.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.297][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-10-14 11:06:08.298][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:06:08.299][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:06:08.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:08.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:08.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:08.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:08.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:08.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:08.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:08.317][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:08.321][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:06:08.323][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2023-10-14 11:06:08.325][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:06:08.326][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2023-10-14 11:06:08.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:08.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:08.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:08.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:08.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:08.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:08.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:08.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:08.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:08.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:08.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:08.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:08.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:08.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:08.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:08.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:08.388][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:08.392][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:06:08.394][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2023-10-14 11:06:08.395][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:06:08.397][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2023-10-14 11:06:08.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:08.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:08.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:08.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:08.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:08.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:08.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:08.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:08.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:08.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:08.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:08.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:08.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:08.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:08.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:08.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:08.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:08.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:08.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:08.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:08.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:08.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:08.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:08.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:08.490][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:06:08.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:08.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:08.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:08.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:08.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:08.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:08.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:08.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.514][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:08.515][private$selectFields]
biodb.TRACE[2023-10-14 11:06:08.516][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:08.517][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:08.518][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:08.520][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.521][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.522][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.523][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.524][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.526][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.527][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.528][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.529][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:08.530][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:08.531][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.533][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.534][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.535][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.536][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:08.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.552][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2023-10-14 11:06:08.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:08.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:08.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:08.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:08.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:08.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:08.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:08.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.576][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:08.577][private$selectFields]
biodb.TRACE[2023-10-14 11:06:08.578][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:08.579][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:08.580][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:08.581][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.584][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.585][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.586][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.587][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.588][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.589][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.591][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:08.592][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:08.593][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.594][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.595][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.596][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.597][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:08.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.613][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2023-10-14 11:06:08.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:08.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:08.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:08.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:08.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:08.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:08.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:08.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.637][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:08.638][private$selectFields]
biodb.TRACE[2023-10-14 11:06:08.639][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:08.640][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:08.641][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:08.642][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.644][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.645][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.646][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.647][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.648][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.649][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.651][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.652][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:08.653][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:08.654][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.655][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.656][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.658][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.659][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:08.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:08.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.675][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2023-10-14 11:06:08.676][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:06:08.677][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:06:08.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:08.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:08.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:08.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:08.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:08.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:08.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:08.695][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:08.699][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:06:08.700][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2023-10-14 11:06:08.702][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:06:08.703][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2023-10-14 11:06:08.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:08.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:08.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:08.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:08.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:08.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:08.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:08.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:08.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:08.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:08.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:08.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:08.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:08.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:08.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:08.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:08.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:08.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:08.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:08.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:08.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:08.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:08.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:08.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:08.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:08.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:08.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:08.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:08.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:08.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:08.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:08.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:08.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:08.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:08.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:08.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:08.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:08.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:08.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:08.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:08.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:08.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:08.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:08.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:08.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:08.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:08.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:08.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:08.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:08.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:08.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:08.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:08.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:08.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:08.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:08.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:08.907][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:08.911][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:06:08.912][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2023-10-14 11:06:08.914][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:06:08.915][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2023-10-14 11:06:08.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:08.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:08.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:08.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:08.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:08.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:08.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:08.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:08.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:08.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:08.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:08.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:08.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:08.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:08.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:08.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:08.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:08.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:08.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:08.975][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:08.979][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:06:08.981][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dd9d19fb78fcc7453eff2e9dd7ba5702".
biodb.TRACE[2023-10-14 11:06:08.983][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:06:08.984][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content".
biodb.DEBUG[2023-10-14 11:06:08.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:08.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:08.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:09.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:09.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:09.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:09.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:09.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:09.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:09.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:09.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:09.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:09.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:09.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:09.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:09.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:09.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:09.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:09.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:09.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:09.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:09.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:09.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:09.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:09.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:09.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:09.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:09.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:09.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:09.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:09.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:09.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:09.047][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:06:09.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:09.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:09.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:09.057][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:09.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:09.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:09.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:09.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:09.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:09.071][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:09.072][private$selectFields]
biodb.TRACE[2023-10-14 11:06:09.074][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:09.075][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:09.076][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:09.077][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.078][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.080][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.081][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:09.082][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.083][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.084][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.085][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:09.086][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:09.088][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:09.089][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.090][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.091][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.092][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:09.093][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:09.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:09.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:09.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:09.109][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2023-10-14 11:06:09.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:09.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:09.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:09.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:09.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:09.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:09.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:09.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:09.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:09.138][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:09.139][private$selectFields]
biodb.TRACE[2023-10-14 11:06:09.140][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:09.141][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:09.142][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:09.144][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.145][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.146][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.147][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:09.148][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.149][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.150][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.151][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:09.153][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:09.154][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:09.155][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.156][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.157][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.158][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:09.159][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:09.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:09.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:09.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:09.175][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2023-10-14 11:06:09.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:09.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:09.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:09.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:09.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:09.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:09.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:09.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:09.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:09.214][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:09.215][private$selectFields]
biodb.TRACE[2023-10-14 11:06:09.217][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:09.218][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:09.219][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:09.220][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.221][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.222][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.223][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:09.225][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.226][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.227][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.228][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:09.229][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:09.230][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:09.231][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.233][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.234][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.235][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:09.236][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:09.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:09.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:09.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:09.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:09.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:09.261][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2023-10-14 11:06:09.262][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:06:09.263][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:06:09.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:09.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:09.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:09.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:09.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:09.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:09.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:09.308][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:09.312][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:09.313][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:09.315][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2023-10-14 11:06:09.955][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2023-10-14 11:06:10.672][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:06:10.674][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content"
biodb.TRACE[2023-10-14 11:06:10.679][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.request"
biodb.DEBUG[2023-10-14 11:06:10.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:10.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:10.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:10.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:10.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:10.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:10.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:10.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:10.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:10.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:10.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:10.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:10.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:10.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:10.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:10.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:10.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:10.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:10.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:10.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:10.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:10.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:10.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:10.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:10.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:10.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:10.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:10.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:10.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:10.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:10.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:10.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:10.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:10.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:10.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:10.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:10.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:10.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:10.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:10.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:10.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:10.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:10.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:10.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:10.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:10.753][private$loadEntries] Creating entries from ids [1]: "28243".
biodb.DEBUG[2023-10-14 11:06:10.754][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:06:10.756][cch$loadFileContent] Trying to load 1 files from cache: [1]: "28243".
biodb.TRACE[2023-10-14 11:06:10.757][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:06:10.759][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:06:10.760][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:06:10.761][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:06:10.762][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:06:10.763][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:06:10.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:10.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:10.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:10.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:10.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:10.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:10.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:10.780][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.DEBUG[2023-10-14 11:06:10.784][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:10.785][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:10.787][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.TRACE[2023-10-14 11:06:11.466][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243).
biodb.DEBUG[2023-10-14 11:06:12.140][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:06:12.142][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.content"
biodb.TRACE[2023-10-14 11:06:12.146][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.request"
biodb.TRACE[2023-10-14 11:06:12.149][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/28243.xml"
biodb.DEBUG[2023-10-14 11:06:12.151][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:06:12.153][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:06:12.154][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:06:12.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:12.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:12.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:12.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:12.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:12.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:12.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:12.171][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:12.172][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:12.173][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.174][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:12.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:12.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.181][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:12.182][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:12.183][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.184][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.186][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:12.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:12.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.190][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:12.192][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:12.193][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.205][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.206][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:12.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:12.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.211][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:12.212][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:12.214][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.215][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:12.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:12.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.221][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:12.223][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:12.224][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.226][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:12.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:12.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.233][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:12.234][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:12.235][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.236][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.238][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:12.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:12.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.242][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:12.244][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:12.245][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.246][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.247][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:12.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:12.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.252][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:12.253][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:12.254][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.256][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:12.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:12.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.262][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:12.263][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:12.264][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.265][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.267][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:12.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:12.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.272][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:12.273][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:12.274][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.275][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.277][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:12.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:12.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.281][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:12.283][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:12.284][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.285][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.286][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:12.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:12.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:12.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:12.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:12.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:12.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:12.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:12.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:12.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:12.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:12.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:12.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:12.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:12.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:12.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:12.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:12.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:12.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:12.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:12.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:12.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:12.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:12.337][self$createEntryFromContent] Accession numbers: 28243.
biodb.TRACE[2023-10-14 11:06:12.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:12.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:12.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:12.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:12.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:12.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:12.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:12.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:12.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:12.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:12.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:12.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:12.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:12.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:12.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:12.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:12.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:12.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:12.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:12.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:12.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:12.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:12.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:12.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:12.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:12.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:12.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:12.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:12.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:12.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:12.393][private$loadEntries] Creating entries from ids [1]: "70786".
biodb.DEBUG[2023-10-14 11:06:12.394][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:06:12.396][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70786".
biodb.TRACE[2023-10-14 11:06:12.397][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:06:12.398][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:06:12.400][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:06:12.401][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:06:12.402][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:06:12.403][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:06:12.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:12.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:12.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:12.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:12.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:12.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:12.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:12.420][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.DEBUG[2023-10-14 11:06:12.423][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:12.424][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:12.426][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.TRACE[2023-10-14 11:06:19.207][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786).
biodb.DEBUG[2023-10-14 11:06:19.817][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:06:19.819][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.content"
biodb.TRACE[2023-10-14 11:06:19.825][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.request"
biodb.TRACE[2023-10-14 11:06:19.828][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70786.xml"
biodb.DEBUG[2023-10-14 11:06:19.830][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:06:19.832][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:06:19.833][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:06:19.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:19.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:19.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:19.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:19.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:19.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:19.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:19.851][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:19.852][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:19.854][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:19.855][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:19.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:19.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:19.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:19.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:19.861][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:19.862][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:19.864][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:19.865][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:19.866][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:19.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:19.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:19.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:19.871][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:19.873][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:19.874][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:19.875][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:19.876][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:19.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:19.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:19.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:19.881][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:19.883][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:19.884][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:19.885][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:19.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:19.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:19.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:19.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:19.891][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:19.892][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:19.893][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:19.895][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:19.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:19.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:19.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:19.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:19.901][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:19.902][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:19.903][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:19.904][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:19.906][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:19.907][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:19.908][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:19.909][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:19.911][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:19.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:19.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:19.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:19.916][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:19.917][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:19.918][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:19.919][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:19.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:19.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:19.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:19.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:19.925][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:19.927][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:19.928][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:19.929][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:19.931][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:19.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:19.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:19.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:19.935][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:19.937][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:19.938][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:19.939][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:19.940][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:19.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:19.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:19.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:19.953][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:19.955][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:19.956][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:19.957][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:19.958][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:19.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:19.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:19.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:19.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:19.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:19.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:19.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:19.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:19.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:19.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:19.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:19.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:19.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:19.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:19.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:19.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:19.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:19.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:19.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:19.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:19.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:19.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:19.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:19.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:19.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:19.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:19.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:19.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:19.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:19.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:19.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:19.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:20.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:20.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:20.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:20.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:20.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:20.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:20.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:20.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:20.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:20.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:20.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:20.015][self$createEntryFromContent] Accession numbers: 70786.
biodb.TRACE[2023-10-14 11:06:20.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:20.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:20.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:20.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:20.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:20.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:20.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:20.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:20.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:20.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:20.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:20.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:20.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:20.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:20.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:20.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:20.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:20.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:20.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:20.045][private$loadEntries] Creating entries from ids [1]: "78144".
biodb.DEBUG[2023-10-14 11:06:20.046][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:06:20.048][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78144".
biodb.TRACE[2023-10-14 11:06:20.049][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:06:20.050][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:06:20.051][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:06:20.053][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:06:20.054][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:06:20.055][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:06:20.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:20.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:20.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:20.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:20.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:20.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:20.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:20.086][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.DEBUG[2023-10-14 11:06:20.089][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:20.091][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:20.092][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.TRACE[2023-10-14 11:06:20.690][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144).
biodb.DEBUG[2023-10-14 11:06:21.340][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:06:21.342][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.content"
biodb.TRACE[2023-10-14 11:06:21.423][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.request"
biodb.TRACE[2023-10-14 11:06:21.426][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78144.xml"
biodb.DEBUG[2023-10-14 11:06:21.428][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:06:21.429][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:06:21.431][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:06:21.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:21.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:21.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:21.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:21.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:21.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:21.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:21.469][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:21.471][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:21.472][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.473][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:21.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:21.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.480][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:21.481][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:21.483][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.484][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.486][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:21.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:21.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.490][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:21.492][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:21.493][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.494][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.496][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:21.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:21.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.501][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:21.502][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:21.503][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.504][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.506][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:21.507][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:21.508][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.509][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.511][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:21.512][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:21.513][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.514][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.516][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:21.517][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:21.518][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.519][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.521][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:21.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:21.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.526][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:21.527][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:21.528][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.529][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:21.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:21.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.536][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:21.538][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:21.539][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.540][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.542][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:21.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:21.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.547][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:21.549][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:21.550][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.551][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.553][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:21.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:21.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.558][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:21.559][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:21.560][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.561][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.563][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:21.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:21.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:21.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:21.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:21.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:21.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:21.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:21.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:21.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:21.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:21.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:21.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:21.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:21.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:21.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:21.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:21.614][self$createEntryFromContent] Accession numbers: 78144.
biodb.TRACE[2023-10-14 11:06:21.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:21.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:21.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:21.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:21.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:21.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:21.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:21.630][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:06:21.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:21.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:21.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:21.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:21.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:21.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:21.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:21.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.654][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:21.655][private$selectFields]
biodb.TRACE[2023-10-14 11:06:21.656][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:21.657][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:21.658][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:21.660][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.661][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.670][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.671][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.673][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.674][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.675][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.676][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.677][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:21.679][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:21.680][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.681][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.682][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.683][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.684][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:21.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.700][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-10-14 11:06:21.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:21.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:21.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:21.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:21.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:21.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:21.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:21.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.723][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:21.725][private$selectFields]
biodb.TRACE[2023-10-14 11:06:21.726][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:21.727][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:21.728][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:21.729][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.731][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.732][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.734][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.735][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.736][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.737][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.738][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:21.739][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:21.740][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.742][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.743][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.744][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.745][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:21.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.760][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2023-10-14 11:06:21.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:21.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:21.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:21.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:21.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:21.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:21.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:21.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.784][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:21.785][private$selectFields]
biodb.TRACE[2023-10-14 11:06:21.786][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:21.787][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:21.788][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:21.789][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.791][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.792][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.793][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.794][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.795][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.796][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.798][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.799][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:21.800][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:21.801][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.802][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.803][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.804][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.806][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:21.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:21.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:21.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:21.821][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2023-10-14 11:06:21.822][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:06:21.823][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:06:21.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:21.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:21.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:21.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:21.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:21.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:21.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:21.842][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:21.846][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:21.848][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:21.850][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2023-10-14 11:06:22.502][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2023-10-14 11:06:23.252][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:06:23.254][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content"
biodb.TRACE[2023-10-14 11:06:23.259][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.request"
biodb.DEBUG[2023-10-14 11:06:23.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:23.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:23.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:23.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:23.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:23.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:23.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:23.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:23.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:23.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:23.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:23.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:23.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:23.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:23.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:23.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:23.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:23.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:23.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:23.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:23.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:23.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:23.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:23.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:23.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:23.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:23.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:23.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:23.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:23.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:23.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:23.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:23.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:23.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:23.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:23.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:23.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:23.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:23.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:23.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:23.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:23.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:23.348][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:06:23.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:23.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:23.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:23.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:23.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:23.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:23.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:23.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.373][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:23.374][private$selectFields]
biodb.TRACE[2023-10-14 11:06:23.375][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:23.376][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:23.377][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:23.378][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.404][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.406][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.407][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.408][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.409][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.410][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.412][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.413][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:23.414][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:23.415][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.416][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.417][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.418][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.420][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:23.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.444][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2023-10-14 11:06:23.445][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:23.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:23.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:23.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:23.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:23.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:23.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:23.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.470][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:23.471][private$selectFields]
biodb.TRACE[2023-10-14 11:06:23.472][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:23.473][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:23.474][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:23.476][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.477][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.478][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.479][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.480][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.481][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.483][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.484][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.485][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:23.486][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:23.487][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.488][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.489][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.491][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.492][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:23.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.507][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2023-10-14 11:06:23.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:23.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:23.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:23.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:23.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:23.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:23.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:23.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.531][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:23.532][private$selectFields]
biodb.TRACE[2023-10-14 11:06:23.534][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:23.535][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:23.536][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:23.537][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.539][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.540][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.541][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.542][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.544][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.545][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.546][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.547][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:23.548][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:23.550][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.551][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.552][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.553][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.555][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:23.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:23.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:23.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:23.572][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2023-10-14 11:06:23.573][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:06:23.574][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:06:23.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:23.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:23.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:23.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:23.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:23.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:23.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:23.593][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:23.597][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:23.599][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:23.602][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2023-10-14 11:06:24.196][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2023-10-14 11:06:24.918][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:06:24.922][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content"
biodb.TRACE[2023-10-14 11:06:24.927][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.request"
biodb.DEBUG[2023-10-14 11:06:24.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:24.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:24.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:24.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:24.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:24.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:24.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:24.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:24.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:24.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:24.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:24.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:24.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:24.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:24.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:24.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:24.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:24.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:24.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:24.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:24.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:24.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:24.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:24.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:24.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:24.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:24.975][private$loadEntries] Creating entries from ids [1]: "47739".
biodb.DEBUG[2023-10-14 11:06:24.976][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:06:24.978][cch$loadFileContent] Trying to load 1 files from cache: [1]: "47739".
biodb.TRACE[2023-10-14 11:06:24.995][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:06:24.997][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:06:24.998][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:06:24.999][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:06:25.000][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:06:25.001][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:06:25.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:25.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:25.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:25.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:25.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:25.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:25.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:25.018][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.DEBUG[2023-10-14 11:06:25.021][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:25.023][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:25.024][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.TRACE[2023-10-14 11:06:25.776][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739).
biodb.DEBUG[2023-10-14 11:06:26.433][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:06:26.436][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.content"
biodb.TRACE[2023-10-14 11:06:26.440][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.request"
biodb.TRACE[2023-10-14 11:06:26.443][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/47739.xml"
biodb.DEBUG[2023-10-14 11:06:26.445][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:06:26.446][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:06:26.448][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:06:26.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:26.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:26.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:26.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:26.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:26.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:26.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:26.465][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:26.466][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:26.467][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.469][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:26.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:26.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.475][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:26.476][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:26.477][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.478][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.480][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:26.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:26.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.485][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:26.486][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:26.487][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.488][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.490][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:26.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:26.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.495][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:26.496][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:26.497][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.498][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:26.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:26.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.504][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:26.506][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:26.507][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.508][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:26.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:26.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.514][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:26.515][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:26.517][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.518][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.519][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:26.521][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:26.522][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.523][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.525][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:26.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:26.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.530][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:26.542][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:26.544][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.545][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:26.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:26.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.552][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:26.553][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:26.554][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.555][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.557][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:26.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:26.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.562][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:26.563][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:26.564][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.565][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.567][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:26.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:26.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.572][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:26.573][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:26.574][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.575][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.577][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:26.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:26.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:26.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:26.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:26.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:26.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:26.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:26.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:26.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:26.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:26.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:26.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:26.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:26.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:26.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:26.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:26.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:26.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:26.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:26.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:26.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:26.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:26.649][self$createEntryFromContent] Accession numbers: 47739.
biodb.TRACE[2023-10-14 11:06:26.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:26.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:26.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:26.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:26.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:26.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:26.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:26.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:26.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:26.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:26.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:26.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:26.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:26.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:26.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:26.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:26.680][private$loadEntries] Creating entries from ids [1]: "51744".
biodb.DEBUG[2023-10-14 11:06:26.681][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:06:26.683][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51744".
biodb.TRACE[2023-10-14 11:06:26.684][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:06:26.686][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:06:26.687][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:06:26.688][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:06:26.689][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:06:26.690][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:06:26.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:26.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:26.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:26.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:26.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:26.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:26.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:26.708][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.DEBUG[2023-10-14 11:06:26.713][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:26.714][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:26.722][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.TRACE[2023-10-14 11:06:27.376][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744).
biodb.DEBUG[2023-10-14 11:06:28.041][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:06:28.043][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.content"
biodb.TRACE[2023-10-14 11:06:28.048][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.request"
biodb.TRACE[2023-10-14 11:06:28.051][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51744.xml"
biodb.DEBUG[2023-10-14 11:06:28.053][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:06:28.055][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:06:28.056][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:06:28.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:28.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:28.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:28.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:28.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:28.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:28.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:28.074][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:28.075][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:28.076][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.077][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:28.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:28.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.084][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:28.085][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:28.086][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.087][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.089][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:28.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:28.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.094][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:28.096][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:28.097][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.098][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.100][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:28.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:28.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.105][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:28.106][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:28.107][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.108][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:28.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:28.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.114][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:28.116][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:28.117][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.118][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:28.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:28.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.124][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:28.125][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:28.126][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.128][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.129][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:28.130][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:28.131][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.133][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.134][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:28.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:28.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.139][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:28.140][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:28.141][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.142][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:28.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:28.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.149][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:28.150][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:28.152][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.153][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:28.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:28.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.160][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:28.161][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:28.162][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.164][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.165][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:28.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:28.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.170][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:28.171][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:28.172][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.173][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.175][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:28.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:28.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:28.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:28.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:28.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:28.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:28.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:28.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:28.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:28.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:28.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:28.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:28.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:28.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:28.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:28.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:28.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:28.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:28.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:28.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:28.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:28.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:28.227][self$createEntryFromContent] Accession numbers: 51744.
biodb.TRACE[2023-10-14 11:06:28.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:28.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:28.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:28.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:28.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:28.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:28.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:28.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:28.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:28.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:28.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:28.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:28.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:28.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:28.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:28.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:28.264][private$loadEntries] Creating entries from ids [1]: "64473".
biodb.DEBUG[2023-10-14 11:06:28.266][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:06:28.268][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64473".
biodb.TRACE[2023-10-14 11:06:28.269][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:06:28.270][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:06:28.272][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:06:28.273][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:06:28.274][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:06:28.275][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:06:28.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:28.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:28.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:28.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:28.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:28.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:28.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:28.292][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.DEBUG[2023-10-14 11:06:28.295][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:28.296][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:28.298][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.TRACE[2023-10-14 11:06:28.940][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473).
biodb.DEBUG[2023-10-14 11:06:29.589][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:06:29.592][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.content"
biodb.TRACE[2023-10-14 11:06:29.597][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.request"
biodb.TRACE[2023-10-14 11:06:29.600][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64473.xml"
biodb.DEBUG[2023-10-14 11:06:29.602][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:06:29.603][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:06:29.605][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:06:29.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:29.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:29.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:29.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:29.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:29.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:29.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:29.621][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:29.623][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:29.624][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.625][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:29.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:29.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.631][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:29.632][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:29.633][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.635][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.636][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:29.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:29.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.641][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:29.642][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:29.643][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.644][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.646][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:29.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:29.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.651][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:29.652][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:29.653][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.654][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.655][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:29.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:29.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.660][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:29.662][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:29.663][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.664][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.665][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:29.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:29.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.670][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:29.671][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:29.672][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.674][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.675][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:29.676][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:29.678][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.679][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.680][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:29.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:29.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.685][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:29.686][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:29.687][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.688][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:29.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:29.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.695][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:29.696][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:29.697][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.698][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.700][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:29.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:29.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.705][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:29.706][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:29.707][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.708][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.709][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:29.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:29.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.714][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:29.715][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:29.716][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.717][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.719][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:29.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:29.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:29.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:29.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:29.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:29.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:29.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:29.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:29.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:29.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:29.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:29.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:29.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:29.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:29.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:29.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:29.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:29.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:29.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:29.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:29.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:29.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:29.770][self$createEntryFromContent] Accession numbers: 64473.
biodb.TRACE[2023-10-14 11:06:29.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:29.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:29.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:29.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:29.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:29.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:29.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:29.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:29.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:29.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:29.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:29.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:29.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:29.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:29.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:29.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:29.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:29.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:29.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:29.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:29.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:29.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:29.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:29.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:29.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:29.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:29.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:29.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:29.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:29.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:29.828][private$loadEntries] Creating entries from ids [1]: "75244".
biodb.DEBUG[2023-10-14 11:06:29.829][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:06:29.831][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75244".
biodb.TRACE[2023-10-14 11:06:29.832][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:06:29.834][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:06:29.835][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:06:29.836][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:06:29.838][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:06:29.839][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:06:29.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:29.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:29.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:29.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:29.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:29.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:29.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:29.856][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.DEBUG[2023-10-14 11:06:29.860][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:29.861][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:29.862][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.TRACE[2023-10-14 11:06:30.479][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244).
biodb.DEBUG[2023-10-14 11:06:31.125][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:06:31.150][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.content"
biodb.TRACE[2023-10-14 11:06:31.193][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.request"
biodb.TRACE[2023-10-14 11:06:31.196][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75244.xml"
biodb.DEBUG[2023-10-14 11:06:31.198][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:06:31.200][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:06:31.201][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:06:31.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:31.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:31.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:31.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:31.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:31.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:31.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:31.230][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:31.232][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:31.233][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.234][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:31.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:31.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.240][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:31.242][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:31.243][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.244][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.245][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:31.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:31.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.251][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:31.252][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:31.254][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.255][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.257][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:31.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:31.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.263][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:31.264][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:31.265][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.266][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:31.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:31.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.274][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:31.275][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:31.276][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.278][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:31.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:31.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.284][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:31.285][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:31.286][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.287][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.289][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:31.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:31.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.294][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:31.295][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:31.297][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.298][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.299][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:31.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:31.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.304][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:31.305][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:31.306][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.307][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:31.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:31.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.314][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:31.315][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:31.316][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.317][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.319][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:31.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:31.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.324][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:31.325][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:31.326][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.327][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.328][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:31.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:31.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.333][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:31.334][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:31.335][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.337][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.338][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:31.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:31.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:31.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:31.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:31.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:31.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:31.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:31.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:31.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:31.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:31.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:31.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:31.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:31.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:31.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:31.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:31.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:31.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:31.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:31.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:31.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:31.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:31.390][self$createEntryFromContent] Accession numbers: 75244.
biodb.TRACE[2023-10-14 11:06:31.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:31.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:31.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:31.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:31.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:31.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:31.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:31.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:31.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:31.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:31.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:31.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:31.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:31.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:31.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:31.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:31.420][private$loadEntries] Creating entries from ids [1]: "75311".
biodb.DEBUG[2023-10-14 11:06:31.421][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:06:31.423][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75311".
biodb.TRACE[2023-10-14 11:06:31.425][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:06:31.426][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:06:31.427][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:06:31.428][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:06:31.430][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:06:31.431][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:06:31.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:31.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:31.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:31.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:31.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:31.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:31.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:31.448][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.DEBUG[2023-10-14 11:06:31.452][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:31.453][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:31.455][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.TRACE[2023-10-14 11:06:32.113][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311).
biodb.DEBUG[2023-10-14 11:06:32.765][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:06:32.768][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.content"
biodb.TRACE[2023-10-14 11:06:32.824][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.request"
biodb.TRACE[2023-10-14 11:06:32.828][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75311.xml"
biodb.DEBUG[2023-10-14 11:06:32.830][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:06:32.831][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:06:32.833][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:06:32.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:32.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:32.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:32.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:32.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:32.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:32.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:32.852][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:32.853][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:32.855][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:32.856][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:32.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:32.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:32.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:32.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:32.864][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:32.865][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:32.866][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:32.868][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:32.869][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:32.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:32.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:32.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:32.875][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:32.876][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:32.877][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:32.878][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:32.880][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:32.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:32.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:32.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:32.885][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:32.887][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:32.888][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:32.889][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:32.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:32.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:32.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:32.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:32.896][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:32.897][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:32.898][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:32.899][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:32.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:32.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:32.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:32.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:32.906][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:32.908][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:32.909][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:32.910][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:32.912][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:32.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:32.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:32.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:32.917][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:32.918][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:32.919][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:32.920][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:32.922][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:32.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:32.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:32.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:32.927][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:32.928][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:32.929][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:32.930][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:32.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:32.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:32.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:32.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:32.937][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:32.947][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:32.949][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:32.950][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:32.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:32.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:32.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:32.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:32.972][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:32.973][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:32.975][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:32.976][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:32.977][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:32.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:32.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:32.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:32.982][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:32.983][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:32.984][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:32.985][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:32.987][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:32.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:32.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:32.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:32.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:32.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:32.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:32.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:32.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:32.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:32.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:33.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:33.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:33.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:33.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:33.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:33.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:33.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:33.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:33.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:33.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:33.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:33.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:33.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:33.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:33.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:33.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:33.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:33.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:33.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:33.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:33.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:33.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:33.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:33.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:33.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:33.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:33.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:33.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:33.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:33.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:33.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:33.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:33.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:33.042][self$createEntryFromContent] Accession numbers: 75311.
biodb.TRACE[2023-10-14 11:06:33.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:33.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:33.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:33.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:33.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:33.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:33.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:33.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:33.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:33.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:33.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:33.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:33.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:33.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:33.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:33.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:33.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:33.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:33.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:33.072][private$loadEntries] Creating entries from ids [1]: "75350".
biodb.DEBUG[2023-10-14 11:06:33.073][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:06:33.075][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75350".
biodb.TRACE[2023-10-14 11:06:33.077][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:06:33.078][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:06:33.079][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:06:33.080][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:06:33.082][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:06:33.083][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:06:33.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:33.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:33.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:33.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:33.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:33.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:33.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:33.101][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.DEBUG[2023-10-14 11:06:33.104][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:33.106][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:33.107][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.TRACE[2023-10-14 11:06:33.739][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350).
biodb.DEBUG[2023-10-14 11:06:34.573][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:06:34.576][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.content"
biodb.TRACE[2023-10-14 11:06:34.580][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.request"
biodb.TRACE[2023-10-14 11:06:34.584][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75350.xml"
biodb.DEBUG[2023-10-14 11:06:34.665][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:06:34.667][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:06:34.668][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:06:34.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:34.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:34.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:34.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:34.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:34.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:34.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:34.688][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:34.690][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:34.691][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.692][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:34.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:34.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.699][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:34.700][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:34.701][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.702][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.704][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:34.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:34.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.709][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:34.710][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:34.711][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.712][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.714][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:34.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:34.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.720][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:34.722][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:34.724][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.726][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:34.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:34.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.736][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:34.737][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:34.738][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.739][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:34.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:34.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.747][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:34.748][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:34.749][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.750][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.752][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:34.753][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:34.755][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.756][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.758][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:34.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:34.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.763][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:34.764][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:34.766][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.767][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:34.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:34.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.774][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:34.776][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:34.778][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.779][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.780][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:34.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:34.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.785][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:34.787][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:34.788][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.789][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.790][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:34.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:34.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.795][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:34.797][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:34.798][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.799][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.800][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:34.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:34.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:34.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:34.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:34.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:34.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:34.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:34.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:34.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:34.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:34.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:34.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:34.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:34.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:34.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:34.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:34.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:34.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:34.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:34.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:34.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:34.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:34.857][self$createEntryFromContent] Accession numbers: 75350.
biodb.TRACE[2023-10-14 11:06:34.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:34.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:34.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:34.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:34.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:34.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:34.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:34.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:34.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:34.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:34.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:34.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:34.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:34.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:34.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:34.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:34.895][private$loadEntries] Creating entries from ids [1]: "87236".
biodb.DEBUG[2023-10-14 11:06:34.896][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:06:34.898][cch$loadFileContent] Trying to load 1 files from cache: [1]: "87236".
biodb.TRACE[2023-10-14 11:06:34.900][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:06:34.901][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:06:34.903][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:06:34.904][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:06:34.905][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:06:34.906][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:06:34.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:34.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:34.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:34.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:34.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:34.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:34.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:34.923][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.DEBUG[2023-10-14 11:06:34.927][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:34.928][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:34.930][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.TRACE[2023-10-14 11:06:35.582][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236).
biodb.DEBUG[2023-10-14 11:06:36.230][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:06:36.233][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.content"
biodb.TRACE[2023-10-14 11:06:36.237][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.request"
biodb.TRACE[2023-10-14 11:06:36.241][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/87236.xml"
biodb.DEBUG[2023-10-14 11:06:36.243][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:06:36.244][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:06:36.246][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:06:36.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:36.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:36.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:36.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:36.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:36.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:36.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:36.264][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:36.265][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:36.266][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.268][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:36.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:36.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.275][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:36.276][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:36.277][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.278][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.280][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:36.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:36.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.285][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:36.287][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:36.288][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.289][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.291][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:36.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:36.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.296][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:36.297][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:36.298][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.299][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:36.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:36.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.306][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:36.307][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:36.308][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.309][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:36.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:36.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.316][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:36.317][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:36.318][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.319][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.321][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:36.322][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:36.323][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.324][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.326][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:36.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:36.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.331][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:36.332][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:36.333][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.334][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:36.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:36.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.340][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:36.341][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:36.342][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.344][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.345][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:36.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:36.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.350][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:36.351][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:36.352][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.353][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.355][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:36.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:36.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.360][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:36.361][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:36.362][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.363][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.365][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:36.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:36.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:36.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:36.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:36.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:36.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:36.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:36.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:36.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:36.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:36.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:36.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:36.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:36.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:36.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:36.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:36.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:36.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:36.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:36.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:36.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:36.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:36.422][self$createEntryFromContent] Accession numbers: 87236.
biodb.TRACE[2023-10-14 11:06:36.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:36.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:36.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:36.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:36.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:36.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:36.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:36.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:36.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:36.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:36.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:36.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:36.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:36.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:36.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:36.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:36.450][private$loadEntries] Creating entries from ids [1]: "132193".
biodb.DEBUG[2023-10-14 11:06:36.452][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:06:36.454][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132193".
biodb.TRACE[2023-10-14 11:06:36.455][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:06:36.457][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:06:36.458][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:06:36.459][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:06:36.461][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:06:36.462][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:06:36.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:36.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:36.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:36.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:36.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:36.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:36.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:36.480][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.DEBUG[2023-10-14 11:06:36.484][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:36.485][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:36.486][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.TRACE[2023-10-14 11:06:37.207][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193).
biodb.DEBUG[2023-10-14 11:06:37.858][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:06:37.860][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.content"
biodb.TRACE[2023-10-14 11:06:37.865][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.request"
biodb.TRACE[2023-10-14 11:06:37.890][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132193.xml"
biodb.DEBUG[2023-10-14 11:06:37.892][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:06:37.894][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:06:37.895][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:06:37.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:37.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:37.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:37.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:37.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:37.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:37.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:37.913][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:37.914][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:37.915][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:37.916][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:37.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:37.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:37.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:37.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:37.922][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:37.924][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:37.925][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:37.926][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:37.927][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:37.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:37.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:37.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:37.932][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:37.946][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:37.947][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:37.949][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:37.950][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:37.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:37.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:37.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:37.957][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:37.958][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:37.960][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:37.961][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:37.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:37.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:37.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:37.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:37.970][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:37.971][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:37.972][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:37.973][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:37.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:37.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:37.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:37.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:37.983][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:37.984][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:37.985][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:37.988][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:37.990][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:37.991][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:37.992][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:37.993][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:37.995][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:37.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:37.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:37.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:38.000][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:38.001][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:38.003][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:38.004][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:38.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:38.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:38.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:38.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:38.010][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:38.012][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:38.013][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:38.014][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:38.016][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:38.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:38.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:38.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:38.021][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:38.022][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:38.024][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:38.025][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:38.026][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:38.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:38.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:38.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:38.032][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:38.033][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:38.034][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:38.035][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:38.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:38.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:38.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:38.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:38.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:38.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:38.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:38.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:38.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:38.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:38.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:38.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:38.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:38.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:38.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:38.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:38.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:38.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:38.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:38.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:38.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:38.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:38.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:38.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:38.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:38.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:38.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:38.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:38.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:38.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:38.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:38.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:38.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:38.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:38.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:38.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:38.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:38.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:38.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:38.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:38.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:38.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:38.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:38.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:38.091][self$createEntryFromContent] Accession numbers: 132193.
biodb.TRACE[2023-10-14 11:06:38.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:38.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:38.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:38.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:38.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:38.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:38.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:38.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:38.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:38.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:38.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:38.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:38.108][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:38.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:38.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:38.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:38.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:38.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:38.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:38.122][private$loadEntries] Creating entries from ids [1]: "146002".
biodb.DEBUG[2023-10-14 11:06:38.123][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:06:38.125][cch$loadFileContent] Trying to load 1 files from cache: [1]: "146002".
biodb.TRACE[2023-10-14 11:06:38.126][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:06:38.127][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:06:38.129][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:06:38.130][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:06:38.131][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:06:38.132][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:06:38.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:38.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:38.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:38.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:38.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:38.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:38.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:38.149][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.DEBUG[2023-10-14 11:06:38.153][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:38.154][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:38.156][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.TRACE[2023-10-14 11:06:38.794][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002).
biodb.DEBUG[2023-10-14 11:06:39.437][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:06:39.439][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.content"
biodb.TRACE[2023-10-14 11:06:39.443][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.request"
biodb.TRACE[2023-10-14 11:06:39.447][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/146002.xml"
biodb.DEBUG[2023-10-14 11:06:39.449][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:06:39.450][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:06:39.451][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:06:39.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:39.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:39.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:39.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:39.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:39.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:39.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:39.470][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:39.471][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:39.472][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.473][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:39.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:39.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.479][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:39.481][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:39.482][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.483][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.485][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:39.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:39.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.489][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:39.491][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:39.492][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.493][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.494][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:39.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:39.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.499][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:39.501][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:39.502][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.503][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:39.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:39.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.509][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:39.511][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:39.512][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.513][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:39.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:39.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.519][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:39.521][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:39.522][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.523][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.524][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:39.526][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:39.527][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.528][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.530][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:39.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:39.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.535][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:39.536][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:39.538][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.539][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:39.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:39.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.546][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:39.548][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:39.549][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.550][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.552][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:39.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:39.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.557][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:39.559][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:39.560][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.561][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.562][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:39.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:39.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.567][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:39.569][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:39.570][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.571][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.572][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:39.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:39.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:39.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:39.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:39.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:39.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:39.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:39.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:39.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:39.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:39.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:39.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:39.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:39.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:39.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:39.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:39.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:39.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:39.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:39.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:39.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:39.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:39.634][self$createEntryFromContent] Accession numbers: 146002.
biodb.TRACE[2023-10-14 11:06:39.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:39.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:39.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:39.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:39.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:39.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:39.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:39.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:39.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:39.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:39.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:39.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:39.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:39.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:39.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:39.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:39.662][private$loadEntries] Creating entries from ids [1]: "65641".
biodb.DEBUG[2023-10-14 11:06:39.663][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:06:39.665][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65641".
biodb.TRACE[2023-10-14 11:06:39.666][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:06:39.667][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:06:39.669][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:06:39.670][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:06:39.671][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:06:39.672][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:06:39.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:39.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:39.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:39.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:39.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:39.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:39.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:39.689][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.DEBUG[2023-10-14 11:06:39.692][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:39.693][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:39.695][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.TRACE[2023-10-14 11:06:40.349][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641).
biodb.DEBUG[2023-10-14 11:06:40.990][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:06:40.993][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.content"
biodb.TRACE[2023-10-14 11:06:40.997][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.request"
biodb.TRACE[2023-10-14 11:06:41.001][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65641.xml"
biodb.DEBUG[2023-10-14 11:06:41.003][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:06:41.004][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:06:41.005][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:06:41.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:41.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:41.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:41.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:41.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:41.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:41.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:41.023][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:41.024][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:41.025][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.026][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:41.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:41.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.033][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:41.034][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:41.035][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.036][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.038][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:41.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:41.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.042][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:41.044][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:41.045][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.046][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.047][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:41.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:41.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.052][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:41.053][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:41.054][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.056][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:41.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:41.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.062][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:41.063][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:41.064][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.065][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:41.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:41.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.071][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:41.073][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:41.074][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.075][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.076][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:41.077][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:41.078][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.080][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.081][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:41.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:41.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.086][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:41.087][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:41.088][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.089][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:41.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:41.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.096][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:41.097][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:41.098][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.099][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.101][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:41.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:41.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.106][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:41.107][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:41.108][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.109][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.111][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:41.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:41.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.116][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:41.117][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:41.118][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.119][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.121][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:41.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:41.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:41.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:41.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:41.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:41.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:41.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:41.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:41.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:41.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:41.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:41.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:41.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:41.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:41.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:41.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:41.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:41.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:41.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:41.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:41.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:41.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:41.193][self$createEntryFromContent] Accession numbers: 65641.
biodb.TRACE[2023-10-14 11:06:41.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:41.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:41.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:41.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:41.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:41.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:41.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:41.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:41.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:41.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:41.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:41.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:41.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:41.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:41.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:41.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:41.225][private$loadEntries] Creating entries from ids [1]: "144071".
biodb.DEBUG[2023-10-14 11:06:41.226][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:06:41.228][cch$loadFileContent] Trying to load 1 files from cache: [1]: "144071".
biodb.TRACE[2023-10-14 11:06:41.229][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:06:41.231][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:06:41.233][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:06:41.234][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:06:41.235][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:06:41.236][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:06:41.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:41.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:41.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:41.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:41.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:41.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:41.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:41.257][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.DEBUG[2023-10-14 11:06:41.260][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:41.261][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:41.272][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.TRACE[2023-10-14 11:06:41.921][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071).
biodb.DEBUG[2023-10-14 11:06:42.540][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:06:42.543][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.content"
biodb.TRACE[2023-10-14 11:06:42.548][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.request"
biodb.TRACE[2023-10-14 11:06:42.551][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/144071.xml"
biodb.DEBUG[2023-10-14 11:06:42.553][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:06:42.554][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:06:42.556][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:06:42.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:42.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:42.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:42.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:42.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:42.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:42.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:42.574][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:42.576][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:42.577][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.578][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:42.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:42.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.584][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:42.585][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:42.586][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.587][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.589][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:42.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:42.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.594][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:42.595][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:42.596][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.597][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.599][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:42.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:42.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.603][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:42.605][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:42.606][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.607][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:42.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:42.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.615][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:42.616][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:42.617][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.619][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:42.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:42.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.625][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:42.627][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:42.628][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.629][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.631][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:42.632][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.633][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.635][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.636][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:42.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.642][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:42.643][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:42.644][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.646][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:42.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:42.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.653][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:42.655][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:42.656][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.657][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:42.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:42.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.664][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:42.665][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:42.666][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.668][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.670][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:42.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:42.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.676][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:42.678][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:42.679][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.680][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.682][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:42.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:42.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:42.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:42.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:42.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:42.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:42.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:42.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:42.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:42.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:42.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:42.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:42.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:42.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:42.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:42.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:42.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:42.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:42.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:42.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:42.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:42.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:42.737][self$createEntryFromContent] Accession numbers: 144071.
biodb.TRACE[2023-10-14 11:06:42.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:42.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:42.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:42.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:42.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:42.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:42.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:42.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:42.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:42.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:42.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:42.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:42.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:42.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:42.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:42.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:42.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:42.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:42.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:42.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:42.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:42.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:42.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:42.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:42.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:42.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:42.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:42.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:42.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:42.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:42.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:42.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:42.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:42.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:42.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:42.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:42.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:42.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:42.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:42.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:42.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:42.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:42.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:42.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:42.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:42.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:42.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:42.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:42.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:42.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:42.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:42.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:42.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:42.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:42.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:42.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:42.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:42.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:42.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:42.965][private$loadEntries] Creating entries from ids [1]: "168650".
biodb.DEBUG[2023-10-14 11:06:42.966][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:06:42.968][cch$loadFileContent] Trying to load 1 files from cache: [1]: "168650".
biodb.TRACE[2023-10-14 11:06:42.970][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:06:42.971][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:06:42.972][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:06:42.974][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:06:42.975][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:06:42.976][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:06:42.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:42.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:42.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:42.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:42.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:42.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:42.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:42.993][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.DEBUG[2023-10-14 11:06:42.996][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:42.997][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:42.999][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.TRACE[2023-10-14 11:06:43.641][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650).
biodb.DEBUG[2023-10-14 11:06:44.298][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:06:44.300][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.content"
biodb.TRACE[2023-10-14 11:06:44.343][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.request"
biodb.TRACE[2023-10-14 11:06:44.347][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/168650.xml"
biodb.DEBUG[2023-10-14 11:06:44.349][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:06:44.350][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:06:44.352][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:06:44.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:44.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:44.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:44.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:44.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:44.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:44.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:44.369][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:44.371][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:44.372][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.373][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:44.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:44.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.379][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:44.381][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:44.382][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.383][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.384][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:44.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:44.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.389][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:44.391][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:44.392][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.393][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.395][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:44.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:44.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.400][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:44.401][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:44.403][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.404][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:44.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:44.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.411][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:44.412][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:44.413][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.415][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:44.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:44.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.422][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:44.423][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:44.425][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.426][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.428][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:44.429][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:44.431][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.432][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.433][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:44.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:44.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.439][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:44.440][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:44.441][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.443][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:44.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:44.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.449][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:44.451][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:44.452][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.453][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.455][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:44.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:44.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.460][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:44.462][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:44.463][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.465][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.467][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:44.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:44.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.472][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:44.473][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:44.474][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.475][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.477][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:44.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:44.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:44.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:44.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:44.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:44.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:44.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:44.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:44.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:44.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:44.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:44.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:44.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:44.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:44.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:44.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:44.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:44.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:44.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:44.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:44.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:44.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:44.530][self$createEntryFromContent] Accession numbers: 168650.
biodb.TRACE[2023-10-14 11:06:44.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:44.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:44.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:44.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:44.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:44.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:44.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:44.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:44.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:44.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:44.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:44.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:44.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:44.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:44.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:44.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:44.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:44.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:44.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:44.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:44.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:44.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:44.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:44.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:44.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:44.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:44.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:44.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:44.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:44.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:44.592][private$loadEntries] Creating entries from ids [1]: "169305".
biodb.DEBUG[2023-10-14 11:06:44.593][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:06:44.595][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169305".
biodb.TRACE[2023-10-14 11:06:44.597][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:06:44.598][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:06:44.599][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:06:44.601][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:06:44.602][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:06:44.603][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:06:44.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:44.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:44.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:44.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:44.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:44.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:44.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:44.621][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.DEBUG[2023-10-14 11:06:44.633][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:44.635][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:44.637][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.TRACE[2023-10-14 11:06:45.284][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305).
biodb.DEBUG[2023-10-14 11:06:45.849][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:06:45.851][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.content"
biodb.TRACE[2023-10-14 11:06:45.874][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.request"
biodb.TRACE[2023-10-14 11:06:45.878][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169305.xml"
biodb.DEBUG[2023-10-14 11:06:45.880][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:06:45.882][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:06:45.884][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:06:45.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:45.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:45.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:45.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:45.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:45.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:45.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:45.902][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:45.903][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:45.904][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:45.905][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:45.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:45.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:45.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:45.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:45.913][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:45.914][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:45.915][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:45.916][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:45.918][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:45.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:45.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:45.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:45.925][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:45.926][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:45.927][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:45.929][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:45.931][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:45.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:45.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:45.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:45.936][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:45.937][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:45.938][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:45.940][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:45.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:45.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:45.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:45.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:45.946][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:45.947][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:45.948][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:45.950][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:45.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:45.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:45.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:45.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:45.956][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:45.957][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:45.958][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:45.959][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:45.961][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:45.962][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:45.963][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:45.964][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:45.966][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:45.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:45.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:45.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:45.970][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:45.972][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:45.973][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:45.974][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:45.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:45.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:45.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:45.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:45.980][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:45.981][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:45.982][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:45.984][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:45.985][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:45.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:45.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:45.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:45.990][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:45.991][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:45.992][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:45.994][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:45.995][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:45.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:45.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:45.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:46.000][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:46.001][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:46.002][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:46.004][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:46.005][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:46.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:46.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:46.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:46.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:46.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:46.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:46.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:46.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:46.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:46.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:46.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:46.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:46.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:46.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:46.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:46.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:46.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:46.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:46.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:46.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:46.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:46.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:46.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:46.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:46.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:46.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:46.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:46.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:46.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:46.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:46.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:46.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:46.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:46.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:46.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:46.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:46.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:46.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:46.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:46.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:46.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:46.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:46.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:46.061][self$createEntryFromContent] Accession numbers: 169305.
biodb.TRACE[2023-10-14 11:06:46.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:46.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:46.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:46.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:46.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:46.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:46.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:46.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:46.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:46.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:46.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:46.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:46.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:46.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:46.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:46.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:46.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:46.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:46.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:46.090][private$loadEntries] Creating entries from ids [1]: "176869".
biodb.DEBUG[2023-10-14 11:06:46.092][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:06:46.094][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176869".
biodb.TRACE[2023-10-14 11:06:46.095][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:06:46.097][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:06:46.098][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:06:46.099][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:06:46.101][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:06:46.102][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:06:46.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:46.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:46.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:46.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:46.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:46.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:46.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:46.119][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.DEBUG[2023-10-14 11:06:46.122][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:46.124][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:46.125][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.TRACE[2023-10-14 11:06:46.779][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869).
biodb.DEBUG[2023-10-14 11:06:47.427][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:06:47.429][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.content"
biodb.TRACE[2023-10-14 11:06:47.433][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.request"
biodb.TRACE[2023-10-14 11:06:47.437][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176869.xml"
biodb.DEBUG[2023-10-14 11:06:47.438][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:06:47.440][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:06:47.441][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:06:47.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:47.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:47.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:47.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:47.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:47.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:47.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:47.458][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:47.460][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:47.461][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.462][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:47.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:47.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.468][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:47.470][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:47.471][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.472][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.473][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:47.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:47.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.478][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:47.479][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:47.480][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.481][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.483][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:47.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:47.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.488][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:47.489][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:47.490][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.491][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:47.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:47.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.498][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:47.499][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:47.500][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.501][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.503][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:47.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:47.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.507][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:47.509][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:47.510][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.511][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.512][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:47.514][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:47.515][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.516][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.517][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:47.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:47.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.534][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:47.536][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:47.537][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.538][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:47.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:47.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.544][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:47.545][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:47.547][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.548][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.549][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:47.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:47.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.554][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:47.556][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:47.557][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.558][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.559][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:47.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:47.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.564][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:47.566][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:47.567][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.568][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.569][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:47.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:47.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:47.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:47.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:47.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:47.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:47.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:47.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:47.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:47.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:47.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:47.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:47.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:47.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:47.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:47.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:47.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:47.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:47.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:47.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:47.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:47.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:47.622][self$createEntryFromContent] Accession numbers: 176869.
biodb.TRACE[2023-10-14 11:06:47.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:47.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:47.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:47.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:47.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:47.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:47.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:47.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:47.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:47.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:47.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:47.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:47.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:47.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:47.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:47.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:47.651][private$loadEntries] Creating entries from ids [1]: "185696".
biodb.DEBUG[2023-10-14 11:06:47.652][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:06:47.654][cch$loadFileContent] Trying to load 1 files from cache: [1]: "185696".
biodb.TRACE[2023-10-14 11:06:47.655][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:06:47.657][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:06:47.658][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:06:47.659][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:06:47.660][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:06:47.662][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:06:47.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:47.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:47.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:47.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:47.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:47.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:47.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:47.679][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.DEBUG[2023-10-14 11:06:47.683][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:47.684][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:47.686][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.TRACE[2023-10-14 11:06:48.333][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696).
biodb.DEBUG[2023-10-14 11:06:48.959][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:06:48.962][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.content"
biodb.TRACE[2023-10-14 11:06:48.967][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.request"
biodb.TRACE[2023-10-14 11:06:48.970][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/185696.xml"
biodb.DEBUG[2023-10-14 11:06:48.973][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:06:48.974][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:06:48.976][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:06:48.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:48.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:48.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:48.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:48.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:48.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:48.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:48.995][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:48.996][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:48.998][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:48.999][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:49.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:49.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.006][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:49.007][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:49.008][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.009][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.011][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:49.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:49.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.016][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:49.017][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:49.019][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.020][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.022][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:49.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:49.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.027][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:49.028][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:49.029][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.030][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:49.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:49.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.037][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:49.039][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:49.040][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.041][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.042][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:49.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:49.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.047][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:49.049][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:49.050][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.051][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.052][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:49.054][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:49.055][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.056][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.057][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:49.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:49.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.062][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:49.064][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:49.065][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.066][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:49.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:49.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.072][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:49.073][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:49.074][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.075][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.077][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:49.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:49.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.082][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:49.083][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:49.085][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.086][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.087][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:49.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:49.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.092][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:49.094][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:49.095][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.096][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.098][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:49.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:49.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:49.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:49.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:49.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:49.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:49.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:49.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:49.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:49.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:49.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:49.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:49.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:49.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:49.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:49.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:49.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:49.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:49.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:49.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:49.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:49.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:49.154][self$createEntryFromContent] Accession numbers: 185696.
biodb.TRACE[2023-10-14 11:06:49.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:49.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:49.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:49.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:49.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:49.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:49.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:49.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:49.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:49.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:49.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:49.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:49.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:49.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:49.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:49.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:49.193][private$loadEntries] Creating entries from ids [1]: "190762".
biodb.DEBUG[2023-10-14 11:06:49.194][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:06:49.197][cch$loadFileContent] Trying to load 1 files from cache: [1]: "190762".
biodb.TRACE[2023-10-14 11:06:49.199][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:06:49.201][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:06:49.202][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:06:49.203][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:06:49.205][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:06:49.206][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:06:49.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:49.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:49.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:49.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:49.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:49.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:49.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:49.224][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.DEBUG[2023-10-14 11:06:49.227][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:49.228][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:49.230][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.TRACE[2023-10-14 11:06:49.882][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762).
biodb.DEBUG[2023-10-14 11:06:50.522][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:06:50.524][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.content"
biodb.TRACE[2023-10-14 11:06:50.554][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.request"
biodb.TRACE[2023-10-14 11:06:50.557][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/190762.xml"
biodb.DEBUG[2023-10-14 11:06:50.559][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:06:50.561][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:06:50.563][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:06:50.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:50.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:50.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:50.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:50.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:50.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:50.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:50.580][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:50.581][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:50.582][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.584][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:50.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:50.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.590][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:50.592][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:50.593][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.594][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.595][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:50.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:50.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.602][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:50.604][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:50.605][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.606][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.608][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:50.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:50.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.614][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:50.615][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:50.616][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.617][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:50.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:50.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.624][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:50.625][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:50.626][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.627][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:50.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:50.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.633][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:50.635][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:50.636][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.637][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.638][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:50.640][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:50.641][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.642][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.643][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:50.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:50.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.648][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:50.649][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:50.651][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.652][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:50.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:50.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.658][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:50.659][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:50.660][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.662][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.664][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:50.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:50.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.669][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:50.671][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:50.673][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.674][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.676][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:50.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:50.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.682][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:50.683][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:50.685][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.686][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.688][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:50.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:50.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:50.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:50.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:50.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:50.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:50.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:50.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:50.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:50.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:50.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:50.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:50.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:50.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:50.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:50.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:50.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:50.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:50.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:50.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:50.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:50.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:50.767][self$createEntryFromContent] Accession numbers: 190762.
biodb.TRACE[2023-10-14 11:06:50.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:50.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:50.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:50.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:50.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:50.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:50.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:50.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:50.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:50.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:50.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:50.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:50.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:50.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:50.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:50.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:50.796][private$loadEntries] Creating entries from ids [1]: "193176".
biodb.DEBUG[2023-10-14 11:06:50.798][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:06:50.799][cch$loadFileContent] Trying to load 1 files from cache: [1]: "193176".
biodb.TRACE[2023-10-14 11:06:50.801][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:06:50.802][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:06:50.803][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:06:50.805][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:06:50.806][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:06:50.807][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:06:50.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:50.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:50.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:50.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:50.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:50.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:50.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:50.824][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.DEBUG[2023-10-14 11:06:50.827][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:50.828][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:50.830][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.TRACE[2023-10-14 11:06:51.483][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176).
biodb.DEBUG[2023-10-14 11:06:52.129][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:06:52.131][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.content"
biodb.TRACE[2023-10-14 11:06:52.135][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.request"
biodb.TRACE[2023-10-14 11:06:52.139][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/193176.xml"
biodb.DEBUG[2023-10-14 11:06:52.141][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:06:52.143][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:06:52.144][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:06:52.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:52.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:52.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:52.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:52.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:52.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:52.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:52.162][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:52.164][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:52.165][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.166][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:52.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:52.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.195][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:52.197][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:52.198][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.200][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.201][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:52.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:52.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.206][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:52.207][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:52.208][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.210][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.211][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:52.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:52.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.216][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:52.217][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:52.218][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.220][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:52.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:52.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.226][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:52.227][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:52.228][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.229][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:52.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:52.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.236][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:52.237][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:52.238][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.239][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.240][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:52.242][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:52.243][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.244][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.245][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:52.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:52.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.250][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:52.252][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:52.253][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.254][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:52.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:52.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.264][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:52.266][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:52.268][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.270][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.273][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:52.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:52.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.278][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:52.280][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:52.281][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.283][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.285][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:52.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:52.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.290][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:52.291][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:52.293][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.294][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.296][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:52.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:52.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:52.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:52.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:52.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:52.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:52.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:52.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:52.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:52.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:52.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:52.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:52.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:52.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:52.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:52.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:52.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:52.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:52.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:52.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:52.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:52.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:52.350][self$createEntryFromContent] Accession numbers: 193176.
biodb.TRACE[2023-10-14 11:06:52.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:52.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:52.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:52.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:52.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:52.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:52.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:52.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:52.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:52.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:52.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:52.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:52.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:52.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:52.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:52.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:52.382][private$loadEntries] Creating entries from ids [1]: "196395".
biodb.DEBUG[2023-10-14 11:06:52.383][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:06:52.385][cch$loadFileContent] Trying to load 1 files from cache: [1]: "196395".
biodb.TRACE[2023-10-14 11:06:52.386][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:06:52.388][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:06:52.389][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:06:52.390][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:06:52.392][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:06:52.393][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:06:52.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:52.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:52.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:52.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:52.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:52.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:52.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:52.411][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.DEBUG[2023-10-14 11:06:52.414][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:52.416][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:52.417][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.TRACE[2023-10-14 11:06:53.020][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395).
biodb.DEBUG[2023-10-14 11:06:53.672][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:06:53.690][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.content"
biodb.TRACE[2023-10-14 11:06:53.728][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.request"
biodb.TRACE[2023-10-14 11:06:53.731][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/196395.xml"
biodb.DEBUG[2023-10-14 11:06:53.734][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:06:53.736][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:06:53.737][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:06:53.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:53.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:53.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:53.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:53.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:53.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:53.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:53.758][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:53.759][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:53.761][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.764][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:53.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:53.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.775][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:53.776][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:53.778][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.779][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.781][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:06:53.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:06:53.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.786][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:53.788][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:53.789][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.790][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.792][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:06:53.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:06:53.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.798][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:53.799][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:53.801][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.802][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.803][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:06:53.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:06:53.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.809][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:53.810][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:53.811][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.812][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:06:53.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:06:53.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.820][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:53.821][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:06:53.823][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.824][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.826][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:53.827][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:53.828][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.830][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.831][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:06:53.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:53.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.837][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:53.838][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:53.840][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.841][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:53.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:53.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.847][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:53.849][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:53.850][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.851][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.853][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:06:53.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:06:53.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.858][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:53.859][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:53.860][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.862][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.863][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:06:53.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:06:53.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.869][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:53.870][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:53.871][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.873][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.875][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:06:53.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:06:53.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:53.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:53.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:53.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:53.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:53.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:53.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:53.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:53.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:53.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:53.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:53.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:53.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:53.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:53.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:53.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:53.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:53.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:53.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:06:53.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:06:53.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:53.945][self$createEntryFromContent] Accession numbers: 196395.
biodb.TRACE[2023-10-14 11:06:53.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:53.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:53.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:53.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:53.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:53.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:53.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:53.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:53.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:53.965][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:53.969][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:06:53.972][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dd9d19fb78fcc7453eff2e9dd7ba5702".
biodb.TRACE[2023-10-14 11:06:53.974][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:06:53.976][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content".
biodb.DEBUG[2023-10-14 11:06:53.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:53.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:53.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:53.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:53.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:53.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:54.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:54.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:54.017][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:06:54.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:54.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:54.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:54.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:54.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:54.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:54.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:54.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.043][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:54.044][private$selectFields]
biodb.TRACE[2023-10-14 11:06:54.045][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:54.046][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:54.048][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:54.049][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.050][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.051][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.053][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.054][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.056][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.058][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.059][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.060][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:54.062][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:54.063][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.065][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.066][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.067][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.069][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:54.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.088][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2023-10-14 11:06:54.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:54.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:54.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:54.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:54.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:54.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:54.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:54.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.115][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:54.116][private$selectFields]
biodb.TRACE[2023-10-14 11:06:54.117][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:54.119][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:54.120][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:54.121][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.122][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.123][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.125][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.127][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.129][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.130][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.131][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.132][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:54.133][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:54.135][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.136][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.137][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.138][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.140][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:54.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.158][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2023-10-14 11:06:54.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:54.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:54.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:54.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:54.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:54.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:54.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:54.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.185][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:54.187][private$selectFields]
biodb.TRACE[2023-10-14 11:06:54.188][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:54.189][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:54.190][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:54.191][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.192][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.194][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.195][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.196][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.197][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.199][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.200][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.201][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:54.202][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:54.203][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.205][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.206][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.207][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.208][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:54.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.224][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2023-10-14 11:06:54.225][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:06:54.227][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:06:54.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:54.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:54.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:54.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:54.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:54.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:54.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:54.280][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:54.291][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:06:54.293][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ebf8c17fa19fb0caf99d83ca8441a2ac".
biodb.TRACE[2023-10-14 11:06:54.295][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:06:54.315][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content".
biodb.DEBUG[2023-10-14 11:06:54.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:54.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:54.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:54.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:54.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:54.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:54.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:54.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:54.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:54.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:54.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:54.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:54.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:54.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:54.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:54.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:54.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:54.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:54.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:54.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:54.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:54.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:54.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:54.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:54.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:54.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:54.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:54.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:54.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:54.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:54.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:54.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:54.466][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:06:54.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:54.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:54.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:54.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:54.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:54.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:54.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:54.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.495][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:54.497][private$selectFields]
biodb.TRACE[2023-10-14 11:06:54.498][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:54.499][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:54.500][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:54.502][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.503][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.504][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.505][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.507][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.508][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.510][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.511][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.513][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:54.514][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:54.516][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.517][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.518][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.519][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.520][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:54.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.537][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2023-10-14 11:06:54.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:54.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:54.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:54.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:54.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:54.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:54.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:54.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.563][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:54.564][private$selectFields]
biodb.TRACE[2023-10-14 11:06:54.565][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:54.567][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:54.568][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:54.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.571][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.572][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.573][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.574][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.575][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.577][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.578][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.579][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:54.580][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:54.582][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.584][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.586][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.587][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:54.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.606][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2023-10-14 11:06:54.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:54.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:54.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:54.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:54.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:54.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:54.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:54.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.630][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:54.632][private$selectFields]
biodb.TRACE[2023-10-14 11:06:54.633][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:54.634][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:54.635][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:54.636][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.637][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.638][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.640][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.641][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.642][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.643][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.644][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.645][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:54.647][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:54.648][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.649][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.650][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.651][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.652][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:54.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.668][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2023-10-14 11:06:54.669][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:06:54.671][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:06:54.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:54.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:54.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:54.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:54.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:54.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:54.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:54.689][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:54.693][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:06:54.695][cch$loadFileContent] Trying to load 1 files from cache: [1]: "152225e020c3e5947a0f5a90f021cee7".
biodb.TRACE[2023-10-14 11:06:54.696][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:06:54.698][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content".
biodb.DEBUG[2023-10-14 11:06:54.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:54.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:54.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:54.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:54.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:54.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:54.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:54.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:54.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:54.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:54.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:54.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:54.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:54.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:54.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:54.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:54.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:54.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:54.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:54.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:54.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:54.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:54.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:54.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:54.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:54.794][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:54.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:54.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:54.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:54.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:54.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:54.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:54.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:54.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:54.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:54.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:54.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:54.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:54.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:54.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:54.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:54.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:54.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:54.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:54.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:54.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:54.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:54.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:54.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:54.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:54.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:54.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:54.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:54.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:54.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:54.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:54.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:54.939][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:06:54.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:54.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:54.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:54.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:54.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:54.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:54.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:54.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.970][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:54.971][private$selectFields]
biodb.TRACE[2023-10-14 11:06:54.972][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:54.973][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:54.974][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:54.975][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.977][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.978][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.979][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.980][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.981][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.982][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.983][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.985][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:54.986][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:54.987][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.988][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.990][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.991][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.992][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:54.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:54.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:54.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:54.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.010][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2023-10-14 11:06:55.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:55.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:55.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:55.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:55.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:55.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:55.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:55.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.040][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:55.041][private$selectFields]
biodb.TRACE[2023-10-14 11:06:55.042][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:55.043][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:55.045][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:55.046][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.047][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.049][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.050][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.051][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.053][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.054][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.055][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.056][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:55.058][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:55.059][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.060][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.062][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.063][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.064][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:55.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.083][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2023-10-14 11:06:55.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:55.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:55.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:55.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:55.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:55.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:55.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:55.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.115][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:55.116][private$selectFields]
biodb.TRACE[2023-10-14 11:06:55.117][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:55.118][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:55.119][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:55.120][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.122][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.123][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.124][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.125][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.126][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.127][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.129][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.130][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:55.131][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:55.132][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.134][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.135][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.136][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.137][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:55.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.154][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2023-10-14 11:06:55.155][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:06:55.157][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:06:55.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:55.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:55.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:55.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:55.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:55.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:55.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:55.176][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:55.181][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:06:55.183][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9686ce9c957a368dd8f5b4cc9c5b15b3".
biodb.TRACE[2023-10-14 11:06:55.184][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:06:55.186][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content".
biodb.DEBUG[2023-10-14 11:06:55.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:55.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:55.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:55.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:55.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:55.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:55.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:55.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:55.217][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:55.221][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:06:55.223][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5d833e77a1be58060d0c3916a1e1b293".
biodb.TRACE[2023-10-14 11:06:55.225][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:06:55.226][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content".
biodb.DEBUG[2023-10-14 11:06:55.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:55.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:55.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:55.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:55.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:55.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:55.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:55.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:55.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:55.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:55.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:55.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:55.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:55.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:55.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:55.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:55.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:55.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:55.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:55.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:55.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:55.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:55.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:55.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:55.319][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:06:55.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:55.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:55.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:55.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:55.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:55.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:55.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:55.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.345][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:55.346][private$selectFields]
biodb.TRACE[2023-10-14 11:06:55.347][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:55.348][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:55.349][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:55.350][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.352][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.353][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.354][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.355][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.356][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.358][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.359][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.360][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:55.361][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:55.362][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.384][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.386][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.387][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.388][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:55.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.404][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2023-10-14 11:06:55.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:55.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:55.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:55.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:55.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:55.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:55.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:55.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.429][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:55.430][private$selectFields]
biodb.TRACE[2023-10-14 11:06:55.431][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:55.432][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:55.433][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:55.434][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.436][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.437][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.438][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.439][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.440][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.441][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.443][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.444][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:55.445][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:55.447][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.448][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.449][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.450][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.451][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:55.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.468][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2023-10-14 11:06:55.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:55.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:55.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:55.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:55.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:55.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:55.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:55.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.507][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:55.509][private$selectFields]
biodb.TRACE[2023-10-14 11:06:55.510][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:55.511][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:55.512][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:55.513][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.514][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.516][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.517][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.518][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.519][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.520][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.521][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.523][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:55.524][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:55.525][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.526][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.527][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.528][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.530][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:55.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.545][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2023-10-14 11:06:55.546][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:06:55.548][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:06:55.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:55.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:55.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:55.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:55.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:55.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:55.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:55.591][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:55.595][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:06:55.597][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2023-10-14 11:06:55.598][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:06:55.600][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2023-10-14 11:06:55.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:55.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:55.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:55.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:55.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:55.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:55.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:55.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:55.632][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:55.636][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:06:55.638][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2023-10-14 11:06:55.639][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:06:55.641][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2023-10-14 11:06:55.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:55.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:55.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:55.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:55.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:55.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:55.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:55.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:55.673][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:55.677][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:06:55.679][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2023-10-14 11:06:55.680][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:06:55.682][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2023-10-14 11:06:55.692][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:06:55.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:55.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:55.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:55.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:55.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:55.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:55.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:55.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.720][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:55.721][private$selectFields]
biodb.TRACE[2023-10-14 11:06:55.722][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:55.723][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:55.733][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:55.734][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.736][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.737][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.738][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.739][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.742][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.744][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.745][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.746][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:55.748][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:55.749][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.750][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.751][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.752][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.754][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:55.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.776][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2023-10-14 11:06:55.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:55.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:55.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:55.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:55.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:55.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:55.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:55.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.804][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:55.805][private$selectFields]
biodb.TRACE[2023-10-14 11:06:55.806][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:55.807][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:55.809][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:55.811][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.813][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.815][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.816][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.818][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.819][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.820][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.822][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.823][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:55.824][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:55.826][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.827][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.828][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.830][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.832][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:55.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:55.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.850][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-10-14 11:06:55.851][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:06:55.852][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:06:55.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:55.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:55.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:55.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:55.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:55.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:55.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:55.871][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:55.875][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:06:55.877][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2023-10-14 11:06:55.878][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:06:55.880][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2023-10-14 11:06:55.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:55.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:55.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:55.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:55.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:55.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:55.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:55.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:55.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:55.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:55.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:55.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:55.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:55.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:55.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:55.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:56.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:56.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:56.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:56.062][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:56.066][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:06:56.067][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2023-10-14 11:06:56.112][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:06:56.114][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2023-10-14 11:06:56.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:56.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:56.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:56.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:56.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:56.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:56.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:56.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:56.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:56.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:56.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:56.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:56.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:56.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:56.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:56.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:56.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:56.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:56.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:56.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:56.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:56.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:56.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:56.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:56.225][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:06:56.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:56.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:56.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:56.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:56.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:56.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:56.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:56.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.254][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:56.255][private$selectFields]
biodb.TRACE[2023-10-14 11:06:56.257][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:56.258][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:56.259][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:56.260][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.262][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.263][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.264][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.265][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.266][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.267][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.269][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.270][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:56.271][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:56.272][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.273][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.274][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.276][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.277][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:56.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.293][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2023-10-14 11:06:56.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:56.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:56.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:56.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:56.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:56.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:56.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:56.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.318][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:56.320][private$selectFields]
biodb.TRACE[2023-10-14 11:06:56.321][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:56.322][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:56.323][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:56.324][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.326][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.327][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.328][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.329][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.331][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.332][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.333][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.334][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:56.335][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:56.337][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.338][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.339][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.341][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.342][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:56.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.358][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2023-10-14 11:06:56.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:56.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:56.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:56.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:56.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:56.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:56.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:56.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.384][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:56.385][private$selectFields]
biodb.TRACE[2023-10-14 11:06:56.386][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:56.388][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:56.389][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:56.390][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.391][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.393][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.394][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.396][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.397][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.398][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.399][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.401][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:56.402][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:56.404][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.405][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.406][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.408][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.409][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:56.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.436][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2023-10-14 11:06:56.438][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:06:56.440][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:06:56.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:56.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:56.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:56.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:56.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:56.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:56.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:56.461][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:56.465][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:06:56.467][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2023-10-14 11:06:56.469][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:06:56.471][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2023-10-14 11:06:56.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:56.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:56.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:56.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:56.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:56.486][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:56.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:56.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:56.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:56.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:56.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:56.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:56.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:56.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:56.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:56.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:56.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:56.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:56.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:56.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:56.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:56.542][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:56.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:56.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:56.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:56.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:56.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:56.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:56.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:56.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:56.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:56.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:56.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:56.590][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:56.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:56.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:56.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:56.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:56.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:56.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:56.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:56.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:56.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:56.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:56.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:56.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:56.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:56.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:56.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:56.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:56.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:56.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:56.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:56.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:56.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:56.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:56.692][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:56.696][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:06:56.698][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2023-10-14 11:06:56.699][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:06:56.701][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2023-10-14 11:06:56.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:56.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:56.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:56.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:56.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:56.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:56.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:56.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:56.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:56.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:56.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:56.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:56.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:56.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:56.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:56.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:56.774][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:56.778][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:06:56.780][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dd9d19fb78fcc7453eff2e9dd7ba5702".
biodb.TRACE[2023-10-14 11:06:56.782][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:06:56.784][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content".
biodb.DEBUG[2023-10-14 11:06:56.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:56.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:56.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:56.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:56.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:56.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:56.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:56.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:56.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:56.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:56.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:56.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:56.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:56.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:56.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:56.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:56.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:56.862][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:06:56.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:56.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:56.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:56.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:56.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:56.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:56.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:56.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.889][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:56.890][private$selectFields]
biodb.TRACE[2023-10-14 11:06:56.892][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:56.893][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:56.894][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:56.895][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.897][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.898][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.899][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.900][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.902][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.903][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.904][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.905][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:56.906][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:56.907][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.909][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.910][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.911][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.912][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:56.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.931][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2023-10-14 11:06:56.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:56.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:56.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:56.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:56.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:56.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:56.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:56.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.959][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:56.960][private$selectFields]
biodb.TRACE[2023-10-14 11:06:56.962][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:56.963][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:56.965][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:56.966][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.967][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.968][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.970][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.971][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.973][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.974][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.975][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.977][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:56.979][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:56.980][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.981][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.982][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.984][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.985][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:56.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:56.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:56.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:56.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.003][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2023-10-14 11:06:57.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:57.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:57.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:57.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:57.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:57.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:57.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:57.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.030][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:57.031][private$selectFields]
biodb.TRACE[2023-10-14 11:06:57.032][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:57.034][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:57.035][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:57.036][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.038][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.039][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.040][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.042][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.043][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.044][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.046][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.047][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:57.048][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:57.049][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.051][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.052][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.053][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.054][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:57.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.072][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2023-10-14 11:06:57.073][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:06:57.074][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:06:57.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:57.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:57.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:57.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:57.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:57.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:57.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:57.121][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:57.126][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:06:57.127][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2b6f29bb7a7663ff23fb5e7dcae5c27f".
biodb.TRACE[2023-10-14 11:06:57.129][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:06:57.131][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content".
biodb.DEBUG[2023-10-14 11:06:57.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:57.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:57.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:57.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:57.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:57.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:57.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:57.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:57.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:57.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:57.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:57.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:57.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:57.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:57.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:57.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:57.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:57.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:57.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:57.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:57.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:57.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:57.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:57.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:57.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:57.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:57.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:57.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:57.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:57.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:57.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:57.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:57.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:57.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:57.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:57.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:57.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:57.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:57.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:57.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:57.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:57.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:57.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:57.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:57.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:57.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:57.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:57.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:57.347][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:06:57.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:57.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:57.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:57.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:57.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:57.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:57.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:57.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.387][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:57.388][private$selectFields]
biodb.TRACE[2023-10-14 11:06:57.389][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:57.390][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:57.391][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:57.393][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.394][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.395][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.396][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.397][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.399][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.400][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.401][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.402][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:57.403][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:57.404][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.406][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.407][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.408][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.409][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:57.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.425][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-10-14 11:06:57.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:57.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:57.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:57.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:57.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:57.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:57.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:57.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.451][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:57.452][private$selectFields]
biodb.TRACE[2023-10-14 11:06:57.453][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:57.454][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:57.455][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:57.457][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.458][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.459][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.460][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.461][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.463][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.464][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.465][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.466][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:57.467][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:57.469][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.470][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.471][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.472][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.474][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:57.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.490][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2023-10-14 11:06:57.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:57.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:57.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:57.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:57.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:57.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:57.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:57.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.517][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:57.518][private$selectFields]
biodb.TRACE[2023-10-14 11:06:57.520][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:57.521][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:57.522][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:57.523][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.525][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.526][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.528][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.529][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.531][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.532][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.533][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.535][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:57.536][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:57.537][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.539][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.540][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.541][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.542][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:57.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.559][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2023-10-14 11:06:57.560][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:06:57.561][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:06:57.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:57.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:57.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:57.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:57.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:57.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:57.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:57.580][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:57.585][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:06:57.586][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9a13652ab89a613a3b0e10d3b6cb10a0".
biodb.TRACE[2023-10-14 11:06:57.588][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:06:57.589][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content".
biodb.DEBUG[2023-10-14 11:06:57.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:57.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:57.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:57.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:57.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:57.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:57.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:57.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:57.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:57.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:57.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:57.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:57.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:57.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:57.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:57.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:57.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:57.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:57.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:57.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:57.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:57.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:57.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:57.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:57.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:57.688][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:06:57.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:57.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:57.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:57.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:57.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:57.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:57.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:57.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.716][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:57.717][private$selectFields]
biodb.TRACE[2023-10-14 11:06:57.719][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:57.720][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:57.721][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:57.722][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.724][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.725][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.726][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.728][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.729][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.731][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.732][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.734][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:57.736][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:57.738][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.740][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.742][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.743][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.744][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:57.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.793][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2023-10-14 11:06:57.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:57.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:57.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:57.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:57.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:57.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:57.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:57.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.848][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:57.850][private$selectFields]
biodb.TRACE[2023-10-14 11:06:57.851][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:57.852][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:57.853][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:57.855][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.857][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.859][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.860][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.862][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.865][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.867][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.870][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.872][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:57.874][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:57.876][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.879][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.887][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.889][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.891][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:57.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.918][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2023-10-14 11:06:57.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:57.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:57.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:57.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:57.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:57.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:57.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:57.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.964][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:57.966][private$selectFields]
biodb.TRACE[2023-10-14 11:06:57.968][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:57.971][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:57.973][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:57.975][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.978][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.980][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.982][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.985][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.988][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:57.990][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:57.992][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:57.994][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:57.997][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:57.999][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:58.002][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:58.004][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.005][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.006][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:58.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:58.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:58.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:58.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:58.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:58.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:58.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.033][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2023-10-14 11:06:58.034][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:06:58.035][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:06:58.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:58.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:58.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:58.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:58.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:58.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:58.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:58.053][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:58.057][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:06:58.058][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a985300ab8a01d49254fbf993ad91279".
biodb.TRACE[2023-10-14 11:06:58.060][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:06:58.061][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content".
biodb.DEBUG[2023-10-14 11:06:58.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:58.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:58.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:58.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:58.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:58.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:58.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:58.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:58.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:58.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:58.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:58.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:58.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:58.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:58.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:58.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:58.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:58.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:58.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:58.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:58.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:58.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:58.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:58.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:58.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:58.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:58.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:58.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:58.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:58.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:58.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:58.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.178][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:58.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:58.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:58.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:58.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:58.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:58.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:58.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:58.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:58.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:58.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:58.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:58.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:58.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:58.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:58.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:58.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:58.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:58.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:58.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:58.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:58.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:58.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:58.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:58.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:58.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:58.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:58.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:58.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:58.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:58.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:58.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:58.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:58.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:58.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:58.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:58.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:58.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:58.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:58.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:58.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:58.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:58.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:58.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:58.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:58.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:58.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:58.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:58.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:58.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:58.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:58.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:58.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:58.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:58.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:58.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:58.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:58.431][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:58.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:58.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:58.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:58.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:58.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:58.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:58.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:58.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:58.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:58.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:58.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:58.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:58.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:58.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:58.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:58.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:58.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:58.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:58.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:58.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:58.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:58.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:58.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:58.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:58.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:58.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:58.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:58.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:58.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:58.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:58.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:58.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:58.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:58.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:58.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:58.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:58.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:58.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:58.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:58.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:58.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:58.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:58.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:58.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:58.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:58.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:58.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:58.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:58.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:58.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:58.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:58.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:58.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:58.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:58.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:58.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:58.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:58.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:58.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:58.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:58.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:58.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:58.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:58.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:58.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:58.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:58.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:58.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:58.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:58.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:58.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:58.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:58.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:58.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:58.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:58.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:58.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:58.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:58.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:58.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:58.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:58.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:58.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:58.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:58.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:58.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:58.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:58.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:58.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:58.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:58.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:58.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:58.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:58.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:58.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:58.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:58.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:58.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:58.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:58.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:58.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:58.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:58.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:58.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:58.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:58.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:58.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:58.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:58.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:58.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:58.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:58.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:58.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:58.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:58.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:58.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:58.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:58.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:58.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:58.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:58.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:58.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:59.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:59.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:59.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:59.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:59.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:59.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:59.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:59.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:59.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:59.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:59.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:59.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:59.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:59.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:59.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:59.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:59.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:59.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:59.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:59.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:59.050][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:59.054][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:06:59.056][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dd9d19fb78fcc7453eff2e9dd7ba5702".
biodb.TRACE[2023-10-14 11:06:59.061][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:06:59.063][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content".
biodb.DEBUG[2023-10-14 11:06:59.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:59.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:59.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:59.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:59.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:59.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:59.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:59.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:59.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:59.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:59.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:59.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:59.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:06:59.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:59.098][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:06:59.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:59.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:59.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:59.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:59.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:59.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:59.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:59.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.124][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:59.125][private$selectFields]
biodb.TRACE[2023-10-14 11:06:59.126][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:59.127][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:59.128][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:59.129][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.131][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.132][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.133][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.134][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.135][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.136][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.137][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.139][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:59.140][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:59.141][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.142][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.143][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.144][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.146][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:59.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.161][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2023-10-14 11:06:59.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:59.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:59.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:59.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:59.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:59.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:59.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:59.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.186][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:59.187][private$selectFields]
biodb.TRACE[2023-10-14 11:06:59.188][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:59.189][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:59.190][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:59.191][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.193][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.194][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.196][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.197][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.198][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.200][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.201][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.202][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:59.203][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:59.205][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.206][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.207][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.209][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.210][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:59.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.226][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2023-10-14 11:06:59.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:59.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:59.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:59.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:59.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:59.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:59.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:06:59.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.253][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:59.254][private$selectFields]
biodb.TRACE[2023-10-14 11:06:59.255][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:06:59.256][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:06:59.257][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:59.259][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.260][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.261][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.262][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.264][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.265][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.266][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.267][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.268][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:59.269][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:06:59.271][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.272][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.273][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.274][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.275][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:06:59.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:06:59.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.291][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2023-10-14 11:06:59.293][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:06:59.294][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-10-14 11:06:59.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:59.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:59.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:59.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:59.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:59.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:59.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:59.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:59.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:59.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:59.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:59.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:59.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:59.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:59.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:59.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:59.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:59.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:59.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:59.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:59.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:59.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:59.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:06:59.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:59.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:06:59.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:06:59.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:06:59.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:06:59.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:06:59.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:06:59.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:06:59.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:06:59.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:06:59.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:06:59.400][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:06:59.404][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:06:59.406][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:06:59.408][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2023-10-14 11:06:59.970][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2023-10-14 11:07:00.706][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:00.709][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content"
biodb.TRACE[2023-10-14 11:07:00.714][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.request"
biodb.DEBUG[2023-10-14 11:07:00.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:00.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:00.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:00.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:00.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:00.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:00.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:00.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:00.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:00.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:00.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:00.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:00.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:00.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:00.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:00.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:00.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:00.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:00.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:00.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:00.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:00.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:00.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:00.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:00.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:00.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:00.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:00.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:00.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:00.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:00.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:00.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:00.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:00.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:00.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:00.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:00.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:00.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:00.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:00.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:00.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:00.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:00.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:00.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:00.820][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:00.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:00.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:00.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:00.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:00.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:00.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:00.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:00.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:00.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:00.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:00.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:00.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:00.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:00.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:00.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:00.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:00.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:00.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:00.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:00.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:00.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:00.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:00.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:00.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:00.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:00.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:00.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:00.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:00.878][private$loadEntries] Creating entries from ids [1]: "9442".
biodb.DEBUG[2023-10-14 11:07:00.879][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:07:00.881][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9442".
biodb.TRACE[2023-10-14 11:07:00.883][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:07:00.884][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:07:00.886][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:07:00.887][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:07:00.888][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:07:00.890][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:07:00.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:00.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:00.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:00.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:00.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:00.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:00.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:00.908][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.DEBUG[2023-10-14 11:07:00.911][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:00.912][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:00.914][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.TRACE[2023-10-14 11:07:01.538][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442).
biodb.DEBUG[2023-10-14 11:07:02.186][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:02.189][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.content"
biodb.TRACE[2023-10-14 11:07:02.194][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.request"
biodb.TRACE[2023-10-14 11:07:02.197][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9442.xml"
biodb.DEBUG[2023-10-14 11:07:02.200][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:07:02.201][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:07:02.203][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:07:02.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:02.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:02.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:02.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:02.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:02.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:02.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:02.221][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:02.222][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:02.223][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.225][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:02.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:02.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.231][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:02.232][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:02.234][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.235][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.236][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:02.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:02.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.241][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:02.243][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:02.244][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.245][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.247][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:02.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:02.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.252][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:02.253][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:02.254][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.255][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.257][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:02.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:02.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.262][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:02.263][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:02.265][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.283][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.286][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:02.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:02.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.294][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:02.295][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:02.297][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.298][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.312][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:02.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:02.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.318][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:02.319][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:02.320][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.321][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.323][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:02.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:02.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.328][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:02.329][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:02.330][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.331][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:02.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:02.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.338][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:02.339][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:02.340][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.342][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:02.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:02.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.349][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:02.350][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:02.352][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.353][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.354][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:02.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:02.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.360][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:02.361][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:02.362][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.364][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.365][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:02.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:02.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:02.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:02.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:02.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:02.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:02.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:02.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:02.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:02.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:02.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:02.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:02.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:02.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:02.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:02.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:02.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:02.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:02.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:02.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:02.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:02.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:02.421][self$createEntryFromContent] Accession numbers: 9442.
biodb.TRACE[2023-10-14 11:07:02.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:02.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:02.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:02.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:02.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:02.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:02.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:02.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:02.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:02.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:02.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:02.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:02.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:02.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:02.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:02.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:02.452][private$loadEntries] Creating entries from ids [1]: "34764".
biodb.DEBUG[2023-10-14 11:07:02.453][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:07:02.455][cch$loadFileContent] Trying to load 1 files from cache: [1]: "34764".
biodb.TRACE[2023-10-14 11:07:02.457][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:07:02.458][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:07:02.460][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:07:02.462][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:07:02.463][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:07:02.464][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:07:02.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:02.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:02.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:02.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:02.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:02.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:02.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:02.483][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.DEBUG[2023-10-14 11:07:02.486][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:02.488][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:02.489][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.TRACE[2023-10-14 11:07:03.135][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764).
biodb.DEBUG[2023-10-14 11:07:03.785][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:03.787][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.content"
biodb.TRACE[2023-10-14 11:07:03.793][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.request"
biodb.TRACE[2023-10-14 11:07:03.797][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34764.xml"
biodb.DEBUG[2023-10-14 11:07:03.799][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:07:03.800][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:07:03.802][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:07:03.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:03.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:03.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:03.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:03.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:03.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:03.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:03.820][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:03.822][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:03.823][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:03.824][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:03.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:03.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:03.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:03.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:03.831][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:03.833][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:03.834][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:03.835][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:03.837][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:03.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:03.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:03.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:03.842][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:03.843][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:03.845][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:03.846][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:03.848][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:03.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:03.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:03.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:03.853][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:03.854][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:03.856][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:03.857][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:03.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:03.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:03.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:03.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:03.864][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:03.866][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:03.867][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:03.869][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:03.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:03.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:03.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:03.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:03.877][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:03.878][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:03.880][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:03.882][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:03.884][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:03.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:03.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:03.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:03.891][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:03.893][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:03.894][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:03.896][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:03.898][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:03.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:03.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:03.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:03.904][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:03.905][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:03.906][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:03.908][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:03.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:03.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:03.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:03.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:03.915][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:03.917][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:03.918][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:03.920][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:03.922][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:03.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:03.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:03.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:03.943][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:03.944][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:03.945][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:03.946][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:03.948][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:03.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:03.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:03.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:03.953][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:03.954][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:03.955][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:03.956][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:03.958][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:03.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:03.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:03.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:03.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:03.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:03.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:03.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:03.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:03.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:03.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:03.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:03.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:03.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:03.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:03.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:03.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:03.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:03.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:03.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:03.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:03.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:03.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:03.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:03.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:03.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:03.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:03.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:03.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:03.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:03.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:03.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:04.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:04.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:04.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:04.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:04.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:04.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:04.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:04.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:04.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:04.026][self$createEntryFromContent] Accession numbers: 34764.
biodb.TRACE[2023-10-14 11:07:04.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:04.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:04.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:04.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:04.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:04.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:04.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:04.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:04.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:04.044][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:07:04.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:04.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:04.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:04.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:04.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:04.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:04.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:04.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:04.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:04.072][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:04.073][private$selectFields]
biodb.TRACE[2023-10-14 11:07:04.074][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:07:04.075][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:07:04.077][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:04.078][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.079][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.081][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.082][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:04.083][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.086][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.088][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:04.089][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:04.091][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:04.092][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.094][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.095][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.096][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:04.098][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:07:04.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:04.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:04.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:04.115][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2023-10-14 11:07:04.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:04.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:04.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:04.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:04.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:04.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:04.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:04.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:04.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:04.142][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:04.143][private$selectFields]
biodb.TRACE[2023-10-14 11:07:04.144][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:07:04.145][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:07:04.147][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:04.148][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.149][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.150][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.152][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:04.153][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.154][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.155][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.157][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:04.158][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:04.159][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:04.160][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.162][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.163][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.164][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:04.165][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:07:04.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:04.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:04.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:04.182][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2023-10-14 11:07:04.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:04.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:04.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:04.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:04.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:04.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:04.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:04.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:04.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:04.208][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:04.209][private$selectFields]
biodb.TRACE[2023-10-14 11:07:04.210][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:07:04.211][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:07:04.212][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:04.214][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.215][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.216][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.217][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:04.218][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.221][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.222][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:04.223][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:04.224][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:04.225][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.226][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.227][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.229][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:04.230][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:07:04.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:04.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:04.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:04.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:04.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:04.246][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2023-10-14 11:07:04.247][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:07:04.249][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:07:04.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:04.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:04.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:04.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:04.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:04.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:04.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:04.269][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:07:04.273][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:04.275][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:04.277][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2023-10-14 11:07:04.970][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2023-10-14 11:07:05.882][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:05.886][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content"
biodb.TRACE[2023-10-14 11:07:05.893][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.request"
biodb.DEBUG[2023-10-14 11:07:05.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:05.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:05.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:05.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:05.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:05.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:05.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:05.918][private$loadEntries] Creating entries from ids [1]: "2535".
biodb.DEBUG[2023-10-14 11:07:05.920][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:07:05.922][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2535".
biodb.TRACE[2023-10-14 11:07:05.923][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:07:05.924][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:07:05.926][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:07:05.927][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:07:05.928][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:07:05.929][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:07:05.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:05.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:05.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:05.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:05.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:05.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:05.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:05.946][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.DEBUG[2023-10-14 11:07:05.950][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:05.951][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:05.953][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.TRACE[2023-10-14 11:07:06.689][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535).
biodb.DEBUG[2023-10-14 11:07:07.323][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:07.326][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.content"
biodb.TRACE[2023-10-14 11:07:07.330][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.request"
biodb.TRACE[2023-10-14 11:07:07.334][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2535.xml"
biodb.DEBUG[2023-10-14 11:07:07.337][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:07:07.338][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:07:07.339][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:07:07.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:07.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:07.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:07.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:07.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:07.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:07.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:07.391][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:07.392][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:07.393][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.395][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:07.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:07.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.402][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:07.403][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:07.404][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.405][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.407][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:07.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:07.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.413][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:07.414][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:07.416][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.417][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.419][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:07.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:07.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.424][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:07.426][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:07.427][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.428][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:07.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:07.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.435][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:07.437][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:07.438][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.439][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:07.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:07.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.446][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:07.447][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:07.448][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.450][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.451][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:07.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:07.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.456][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:07.457][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:07.458][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.459][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.461][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:07.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:07.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.465][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:07.467][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:07.468][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.469][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:07.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:07.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.475][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:07.476][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:07.477][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.479][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:07.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:07.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.485][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:07.486][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:07.487][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.488][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.490][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:07.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:07.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.494][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:07.496][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:07.497][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.498][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.499][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:07.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:07.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:07.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:07.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:07.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:07.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:07.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:07.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:07.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:07.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:07.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:07.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:07.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:07.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:07.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:07.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:07.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:07.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:07.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:07.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:07.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:07.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:07.551][self$createEntryFromContent] Accession numbers: 2535.
biodb.TRACE[2023-10-14 11:07:07.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:07.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:07.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:07.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:07.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:07.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:07.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:07.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:07.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:07.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:07.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:07.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:07.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:07.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:07.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:07.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:07.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:07.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:07.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:07.593][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:07.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:07.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:07.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:07.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:07.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:07.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:07.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:07.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:07.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:07.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:07.613][private$loadEntries] Creating entries from ids [1]: "5525".
biodb.DEBUG[2023-10-14 11:07:07.614][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:07:07.616][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5525".
biodb.TRACE[2023-10-14 11:07:07.618][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:07:07.619][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:07:07.620][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:07:07.622][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:07:07.623][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:07:07.624][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:07:07.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:07.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:07.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:07.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:07.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:07.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:07.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:07.641][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.DEBUG[2023-10-14 11:07:07.645][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:07.665][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:07.667][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.TRACE[2023-10-14 11:07:08.330][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525).
biodb.DEBUG[2023-10-14 11:07:09.041][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:09.043][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.content"
biodb.TRACE[2023-10-14 11:07:09.048][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.request"
biodb.TRACE[2023-10-14 11:07:09.088][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5525.xml"
biodb.DEBUG[2023-10-14 11:07:09.090][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:07:09.092][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:07:09.093][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:07:09.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:09.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:09.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:09.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:09.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:09.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:09.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:09.111][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:09.113][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:09.114][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.115][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:09.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:09.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.122][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:09.123][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:09.125][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.126][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.127][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:09.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:09.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.133][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:09.135][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:09.136][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.138][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.140][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:09.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:09.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.146][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:09.147][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:09.149][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.150][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:09.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:09.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.158][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:09.160][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:09.161][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.163][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:09.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:09.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.170][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:09.171][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:09.172][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.180][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.186][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:09.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:09.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.192][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:09.194][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:09.195][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.196][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.198][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:09.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:09.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.204][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:09.205][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:09.207][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.208][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:09.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:09.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.215][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:09.217][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:09.218][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.219][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.221][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:09.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:09.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.227][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:09.228][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:09.230][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.231][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.233][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:09.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:09.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.240][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:09.241][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:09.243][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.244][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.246][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:09.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:09.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:09.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:09.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:09.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:09.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:09.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:09.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:09.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:09.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:09.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:09.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:09.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:09.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:09.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:09.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:09.318][self$createEntryFromContent] Accession numbers: 5525.
biodb.TRACE[2023-10-14 11:07:09.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:09.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:09.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:09.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:09.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:09.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:09.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:09.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:09.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:09.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:09.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:09.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:09.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:09.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:09.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:09.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:09.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:09.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:09.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:09.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:09.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:09.364][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:07:09.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:09.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:09.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:09.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:09.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:09.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:09.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:09.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.390][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:09.392][private$selectFields]
biodb.TRACE[2023-10-14 11:07:09.393][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:07:09.394][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:07:09.395][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:09.396][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.398][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.399][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.400][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.401][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.403][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.404][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.405][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.406][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:09.407][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:09.408][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.410][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.411][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.412][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.413][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:07:09.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.429][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2023-10-14 11:07:09.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:09.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:09.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:09.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:09.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:09.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:09.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:09.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.453][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:09.455][private$selectFields]
biodb.TRACE[2023-10-14 11:07:09.456][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:07:09.457][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:07:09.458][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:09.459][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.460][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.462][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.463][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.464][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.465][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.466][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.467][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.469][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:09.470][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:09.471][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.472][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.473][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.475][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.476][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:07:09.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.492][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2023-10-14 11:07:09.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:09.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:09.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:09.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:09.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:09.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:09.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:09.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.517][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:09.518][private$selectFields]
biodb.TRACE[2023-10-14 11:07:09.519][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:07:09.520][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:07:09.521][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:09.522][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.524][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.525][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.526][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.527][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.530][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.531][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.532][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:09.534][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:09.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.538][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.539][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.541][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:07:09.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:09.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:09.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:09.558][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2023-10-14 11:07:09.559][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:07:09.560][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:07:09.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:09.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:09.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:09.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:09.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:09.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:09.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:09.587][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:07:09.591][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:09.593][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:09.595][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2023-10-14 11:07:10.257][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2023-10-14 11:07:10.822][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:10.824][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content"
biodb.TRACE[2023-10-14 11:07:10.855][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.request"
biodb.DEBUG[2023-10-14 11:07:10.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:10.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:10.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:10.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:10.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:10.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:10.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:10.873][private$loadEntries] Creating entries from ids [1]: "31303".
biodb.DEBUG[2023-10-14 11:07:10.874][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:07:10.876][cch$loadFileContent] Trying to load 1 files from cache: [1]: "31303".
biodb.TRACE[2023-10-14 11:07:10.877][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:07:10.878][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:07:10.880][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:07:10.881][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:07:10.882][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:07:10.883][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:07:10.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:10.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:10.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:10.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:10.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:10.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:10.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:10.901][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.DEBUG[2023-10-14 11:07:10.904][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:10.906][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:10.907][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.TRACE[2023-10-14 11:07:11.561][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303).
biodb.DEBUG[2023-10-14 11:07:12.255][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:12.258][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.content"
biodb.TRACE[2023-10-14 11:07:12.262][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.request"
biodb.TRACE[2023-10-14 11:07:12.265][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/31303.xml"
biodb.DEBUG[2023-10-14 11:07:12.267][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:07:12.269][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:07:12.270][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:07:12.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:12.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:12.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:12.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:12.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:12.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:12.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:12.288][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:12.289][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:12.291][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.292][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:12.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:12.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.298][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:12.300][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:12.301][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.302][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.303][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:12.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:12.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.308][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:12.310][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:12.311][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.312][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.314][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:12.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:12.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.319][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:12.320][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:12.322][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.323][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:12.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:12.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.329][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:12.330][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:12.331][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.332][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.334][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:12.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:12.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.339][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:12.340][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:12.341][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.342][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.344][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:12.345][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:12.346][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.347][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.349][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:12.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:12.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.354][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:12.355][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:12.357][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.358][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:12.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:12.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.364][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:12.365][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:12.366][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.368][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.369][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:12.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:12.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.374][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:12.376][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:12.377][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.378][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.379][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:12.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:12.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.384][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:12.385][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:12.386][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.387][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.389][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:12.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:12.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:12.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:12.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:12.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:12.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:12.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:12.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:12.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:12.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:12.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:12.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:12.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:12.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:12.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:12.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:12.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:12.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:12.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:12.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:12.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:12.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:12.441][self$createEntryFromContent] Accession numbers: 31303.
biodb.TRACE[2023-10-14 11:07:12.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:12.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:12.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:12.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:12.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:12.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:12.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:12.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:12.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:12.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:12.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:12.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:12.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:12.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:12.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:12.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:12.470][private$loadEntries] Creating entries from ids [1]: "37118".
biodb.DEBUG[2023-10-14 11:07:12.471][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:07:12.473][cch$loadFileContent] Trying to load 1 files from cache: [1]: "37118".
biodb.TRACE[2023-10-14 11:07:12.474][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:07:12.476][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:07:12.477][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:07:12.478][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:07:12.479][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:07:12.481][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:07:12.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:12.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:12.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:12.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:12.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:12.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:12.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:12.498][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.DEBUG[2023-10-14 11:07:12.501][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:12.503][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:12.523][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.TRACE[2023-10-14 11:07:13.174][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118).
biodb.DEBUG[2023-10-14 11:07:13.816][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:13.819][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.content"
biodb.TRACE[2023-10-14 11:07:13.823][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.request"
biodb.TRACE[2023-10-14 11:07:13.841][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37118.xml"
biodb.DEBUG[2023-10-14 11:07:13.843][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:07:13.844][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:07:13.846][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:07:13.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:13.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:13.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:13.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:13.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:13.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:13.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:13.863][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:13.864][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:13.865][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:13.867][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:13.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:13.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:13.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:13.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:13.873][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:13.874][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:13.875][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:13.876][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:13.878][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:13.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:13.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:13.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:13.882][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:13.884][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:13.885][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:13.886][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:13.887][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:13.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:13.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:13.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:13.892][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:13.893][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:13.894][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:13.895][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:13.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:13.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:13.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:13.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:13.901][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:13.903][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:13.904][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:13.905][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:13.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:13.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:13.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:13.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:13.911][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:13.912][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:13.913][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:13.915][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:13.916][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:13.917][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:13.918][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:13.919][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:13.921][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:13.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:13.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:13.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:13.926][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:13.927][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:13.928][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:13.929][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:13.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:13.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:13.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:13.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:13.935][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:13.937][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:13.938][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:13.939][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:13.940][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:13.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:13.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:13.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:13.945][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:13.947][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:13.948][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:13.949][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:13.951][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:13.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:13.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:13.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:13.956][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:13.957][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:13.958][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:13.959][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:13.961][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:13.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:13.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:13.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:13.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:13.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:13.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:13.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:13.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:13.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:13.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:13.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:13.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:13.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:13.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:13.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:13.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:13.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:13.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:13.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:13.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:13.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:13.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:13.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:13.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:13.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:13.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:13.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:13.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:13.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:13.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:13.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:13.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:14.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:14.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:14.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:14.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:14.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:14.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:14.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:14.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:14.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:14.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:14.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:14.013][self$createEntryFromContent] Accession numbers: 37118.
biodb.TRACE[2023-10-14 11:07:14.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:14.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:14.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:14.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:14.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:14.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:14.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:14.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:14.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:14.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:14.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:14.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:14.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:14.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:14.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:14.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:14.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:14.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:14.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:14.042][private$loadEntries] Creating entries from ids [1]: "39424".
biodb.DEBUG[2023-10-14 11:07:14.043][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:07:14.045][cch$loadFileContent] Trying to load 1 files from cache: [1]: "39424".
biodb.TRACE[2023-10-14 11:07:14.046][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:07:14.048][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:07:14.049][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:07:14.050][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:07:14.052][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:07:14.053][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:07:14.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:14.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:14.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:14.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:14.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:14.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:14.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:14.071][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.DEBUG[2023-10-14 11:07:14.074][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:14.075][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:14.077][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.TRACE[2023-10-14 11:07:14.669][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424).
biodb.DEBUG[2023-10-14 11:07:15.316][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:15.318][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.content"
biodb.TRACE[2023-10-14 11:07:15.323][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.request"
biodb.TRACE[2023-10-14 11:07:15.326][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/39424.xml"
biodb.DEBUG[2023-10-14 11:07:15.328][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:07:15.330][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:07:15.331][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:07:15.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:15.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:15.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:15.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:15.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:15.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:15.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:15.349][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:15.350][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:15.351][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.352][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:15.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:15.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.358][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:15.360][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:15.361][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.362][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.363][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:15.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:15.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.368][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:15.370][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:15.371][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.372][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.373][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:15.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:15.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.378][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:15.379][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:15.380][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.381][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:15.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:15.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.388][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:15.389][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:15.390][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.391][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:15.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:15.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.398][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:15.399][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:15.400][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.401][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.403][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:15.404][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:15.405][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.406][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.407][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:15.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:15.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.412][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:15.414][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:15.415][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.416][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:15.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:15.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.432][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:15.433][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:15.434][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.435][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.437][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:15.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:15.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.442][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:15.443][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:15.444][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.446][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.447][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:15.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:15.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.452][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:15.453][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:15.454][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.456][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.457][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:15.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:15.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:15.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:15.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:15.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:15.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:15.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:15.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:15.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:15.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:15.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:15.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:15.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:15.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:15.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:15.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:15.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:15.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:15.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:15.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:15.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:15.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:15.510][self$createEntryFromContent] Accession numbers: 39424.
biodb.TRACE[2023-10-14 11:07:15.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:15.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:15.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:15.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:15.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:15.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:15.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:15.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:15.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:15.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:15.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:15.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:15.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:15.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:15.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:15.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:15.539][private$loadEntries] Creating entries from ids [1]: "81767".
biodb.DEBUG[2023-10-14 11:07:15.540][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:07:15.542][cch$loadFileContent] Trying to load 1 files from cache: [1]: "81767".
biodb.TRACE[2023-10-14 11:07:15.543][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:07:15.545][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:07:15.546][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:07:15.547][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:07:15.548][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:07:15.549][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:07:15.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:15.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:15.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:15.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:15.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:15.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:15.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:15.567][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.DEBUG[2023-10-14 11:07:15.571][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:15.572][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:15.574][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.TRACE[2023-10-14 11:07:16.214][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767).
biodb.DEBUG[2023-10-14 11:07:16.862][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:16.865][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.content"
biodb.TRACE[2023-10-14 11:07:16.870][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.request"
biodb.TRACE[2023-10-14 11:07:16.873][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/81767.xml"
biodb.DEBUG[2023-10-14 11:07:16.876][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:07:16.878][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:07:16.879][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:07:16.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:16.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:16.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:16.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:16.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:16.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:16.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:16.897][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:16.898][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:16.900][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:16.901][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:16.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:16.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:16.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:16.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:16.908][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:16.910][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:16.911][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:16.912][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:16.914][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:16.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:16.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:16.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:16.920][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:16.921][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:16.922][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:16.923][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:16.925][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:16.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:16.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:16.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:16.930][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:16.931][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:16.932][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:16.933][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:16.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:16.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:16.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:16.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:16.940][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:16.941][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:16.942][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:16.943][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:16.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:16.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:16.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:16.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:16.950][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:16.951][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:16.952][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:16.953][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:16.955][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:16.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:16.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:16.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:16.959][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:16.961][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:16.962][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:16.963][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:16.964][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:16.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:16.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:16.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:16.969][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:16.970][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:16.971][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:16.972][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:16.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:16.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:16.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:16.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:16.978][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:16.980][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:16.981][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:16.982][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:16.983][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:16.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:16.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:16.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:16.988][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:16.989][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:16.990][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:16.992][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:16.993][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:16.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:16.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:16.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:16.998][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:16.999][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:17.000][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.001][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.002][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:17.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:17.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:17.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:17.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:17.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:17.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:17.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:17.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:17.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:17.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:17.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:17.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:17.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:17.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:17.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:17.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:17.054][self$createEntryFromContent] Accession numbers: 81767.
biodb.TRACE[2023-10-14 11:07:17.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:17.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:17.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:17.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:17.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:17.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:17.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:17.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:17.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:17.107][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:07:17.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:17.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:17.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:17.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:17.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:17.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:17.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:17.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.132][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.133][private$selectFields]
biodb.TRACE[2023-10-14 11:07:17.134][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:07:17.135][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:07:17.136][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.137][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.139][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.140][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.141][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.142][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.143][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.144][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.145][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.147][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.148][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.149][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.150][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.151][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.152][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.154][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:07:17.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.169][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2023-10-14 11:07:17.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:17.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:17.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:17.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:17.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:17.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:17.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:17.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.193][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.194][private$selectFields]
biodb.TRACE[2023-10-14 11:07:17.195][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:07:17.196][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:07:17.197][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.199][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.200][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.201][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.202][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.203][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.204][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.206][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.207][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.208][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.209][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.210][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.211][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.212][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.213][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.215][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:07:17.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.230][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2023-10-14 11:07:17.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:17.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:17.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:17.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:17.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:17.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:17.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:17.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.254][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.255][private$selectFields]
biodb.TRACE[2023-10-14 11:07:17.256][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:07:17.257][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:07:17.258][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.260][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.261][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.262][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.263][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.264][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.265][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.266][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.267][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.269][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.270][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.271][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.272][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.273][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.274][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.275][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:07:17.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.291][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2023-10-14 11:07:17.292][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:07:17.293][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:07:17.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:17.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:17.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:17.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:17.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:17.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:17.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:17.354][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:07:17.358][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:07:17.359][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2023-10-14 11:07:17.361][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:07:17.362][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2023-10-14 11:07:17.366][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:07:17.370][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:07:17.371][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2023-10-14 11:07:17.372][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:07:17.374][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2023-10-14 11:07:17.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:17.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:17.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:17.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:17.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:17.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:17.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:17.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:17.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:17.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:17.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:17.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:17.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:17.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:17.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:17.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:17.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:17.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:17.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:17.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:17.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:17.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:17.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:17.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:17.472][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:07:17.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:17.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:17.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:17.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:17.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:17.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:17.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:17.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.497][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.498][private$selectFields]
biodb.TRACE[2023-10-14 11:07:17.499][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:07:17.500][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:07:17.501][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.503][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.504][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.505][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.506][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.507][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.509][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.510][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.511][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.512][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.513][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.514][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.516][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.517][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.518][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.519][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:07:17.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.535][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2023-10-14 11:07:17.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:17.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:17.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:17.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:17.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:17.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:17.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:17.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.559][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.560][private$selectFields]
biodb.TRACE[2023-10-14 11:07:17.561][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:07:17.562][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:07:17.563][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.565][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.566][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.567][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.568][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.572][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.573][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.574][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.575][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.576][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.577][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.578][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.579][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.581][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:07:17.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.596][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-10-14 11:07:17.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:17.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:17.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:17.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:17.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:17.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:17.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:17.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.620][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.621][private$selectFields]
biodb.TRACE[2023-10-14 11:07:17.622][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:07:17.623][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:07:17.625][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.626][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.627][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.628][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.629][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.630][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.631][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.633][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.634][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.635][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.636][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.637][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.639][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.641][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.642][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:07:17.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.658][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2023-10-14 11:07:17.659][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:07:17.660][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:07:17.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:17.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:17.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:17.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:17.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:17.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:17.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:17.678][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:07:17.682][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:07:17.684][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2023-10-14 11:07:17.685][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:07:17.687][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2023-10-14 11:07:17.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:17.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:17.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:17.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:17.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:17.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:17.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:17.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:17.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:17.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:17.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:17.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:17.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:17.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:17.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:17.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:17.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:17.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:17.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:17.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:17.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:17.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:17.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:17.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:17.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:17.783][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:07:17.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:17.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:17.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:17.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:17.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:17.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:17.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:17.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.809][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.810][private$selectFields]
biodb.TRACE[2023-10-14 11:07:17.811][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:07:17.813][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:07:17.814][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.815][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.816][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.817][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.818][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.820][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.821][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.822][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.823][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.824][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.825][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.827][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.828][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.829][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.830][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.831][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:07:17.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.847][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2023-10-14 11:07:17.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:17.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:17.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:17.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:17.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:17.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:17.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:17.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.873][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.874][private$selectFields]
biodb.TRACE[2023-10-14 11:07:17.875][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:07:17.876][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:07:17.878][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.879][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.880][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.900][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.902][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.903][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.904][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.905][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.907][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.908][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.909][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.910][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.911][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.912][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.913][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.915][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:07:17.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.930][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2023-10-14 11:07:17.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:17.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:17.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:17.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:17.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:17.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:17.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:17.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.955][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.956][private$selectFields]
biodb.TRACE[2023-10-14 11:07:17.957][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:07:17.958][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:07:17.959][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.960][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.961][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.962][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.964][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.965][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.966][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.968][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.969][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.970][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.971][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:17.972][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.974][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.975][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.976][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.977][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:07:17.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:17.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:17.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:17.997][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2023-10-14 11:07:17.998][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:07:17.999][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:07:18.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:18.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:18.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:18.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:18.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:18.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:18.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:18.018][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:07:18.022][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:07:18.024][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2023-10-14 11:07:18.025][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:07:18.027][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2023-10-14 11:07:18.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:18.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:18.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:18.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:18.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:18.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:18.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:18.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:18.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:18.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:18.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:18.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:18.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:18.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:18.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:18.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:18.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:18.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:18.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:18.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:18.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:18.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:18.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:18.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:18.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:18.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:18.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:18.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:18.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:18.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:18.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:18.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:18.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:18.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:18.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:18.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:18.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:18.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:18.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:18.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:18.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:18.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:18.122][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:07:18.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:18.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:18.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:18.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:18.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:18.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:18.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:18.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.148][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:18.149][private$selectFields]
biodb.TRACE[2023-10-14 11:07:18.150][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:07:18.158][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:07:18.159][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:18.161][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.162][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.163][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.164][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.166][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.167][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.168][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.169][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.170][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:18.172][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:18.173][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.174][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.175][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.176][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.178][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:07:18.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.194][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2023-10-14 11:07:18.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:18.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:18.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:18.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:18.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:18.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:18.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:18.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.218][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:18.219][private$selectFields]
biodb.TRACE[2023-10-14 11:07:18.221][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:07:18.222][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:07:18.223][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:18.224][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.225][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.226][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.227][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.229][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.230][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.231][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.232][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.233][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:18.234][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:18.236][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.237][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.238][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.239][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.240][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:07:18.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.256][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2023-10-14 11:07:18.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:18.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:18.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:18.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:18.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:18.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:18.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:18.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.282][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:18.284][private$selectFields]
biodb.TRACE[2023-10-14 11:07:18.285][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:07:18.286][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:07:18.287][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:18.289][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.290][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.291][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.292][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.294][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.295][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.296][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.297][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.299][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:18.300][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:18.301][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.302][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.304][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.305][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.306][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:07:18.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:18.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:18.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:18.322][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2023-10-14 11:07:18.323][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:07:18.324][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:07:18.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:18.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:18.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:18.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:18.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:18.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:18.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:18.367][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:07:18.372][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:18.373][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:18.375][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2023-10-14 11:07:19.035][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2023-10-14 11:07:19.742][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:19.745][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content"
biodb.TRACE[2023-10-14 11:07:19.750][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.request"
biodb.DEBUG[2023-10-14 11:07:19.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:19.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:19.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:19.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:19.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:19.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:19.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:19.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:19.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:19.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:19.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:19.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:19.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:19.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:19.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:19.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:19.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:19.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:19.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:19.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:19.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:19.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:19.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:19.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:19.802][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:19.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:19.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:19.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:19.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:19.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:19.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:19.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:19.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:19.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:19.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:19.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:19.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:19.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:19.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:19.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:19.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:19.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:19.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:19.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:19.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:19.834][private$loadEntries] Creating entries from ids [1]: "17813".
biodb.DEBUG[2023-10-14 11:07:19.836][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:07:19.838][cch$loadFileContent] Trying to load 1 files from cache: [1]: "17813".
biodb.TRACE[2023-10-14 11:07:19.839][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:07:19.840][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:07:19.842][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:07:19.843][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:07:19.844][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:07:19.845][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:07:19.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:19.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:19.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:19.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:19.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:19.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:19.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:19.863][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.DEBUG[2023-10-14 11:07:19.866][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:19.868][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:19.870][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.TRACE[2023-10-14 11:07:20.518][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813).
biodb.DEBUG[2023-10-14 11:07:21.170][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:21.174][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.content"
biodb.TRACE[2023-10-14 11:07:21.181][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.request"
biodb.TRACE[2023-10-14 11:07:21.187][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/17813.xml"
biodb.DEBUG[2023-10-14 11:07:21.190][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:07:21.193][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:07:21.195][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:07:21.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:21.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:21.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:21.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:21.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:21.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:21.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:21.223][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:21.225][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:21.227][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.229][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:21.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:21.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.240][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:21.242][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:21.244][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.246][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.248][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:21.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:21.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.256][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:21.258][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:21.259][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.261][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.264][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:21.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:21.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.272][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:21.273][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:21.275][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.276][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:21.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:21.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.284][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:21.285][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:21.286][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.287][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:21.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:21.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.294][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:21.296][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:21.297][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.298][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.300][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:21.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:21.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.305][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:21.307][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:21.308][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.309][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.311][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:21.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:21.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.334][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:21.335][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:21.336][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.337][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:21.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:21.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.344][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:21.345][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:21.347][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.348][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.350][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:21.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:21.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.354][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:21.356][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:21.357][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.358][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.359][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:21.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:21.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.364][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:21.365][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:21.367][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.368][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.369][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:21.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:21.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:21.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:21.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:21.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:21.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:21.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:21.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:21.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:21.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:21.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:21.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:21.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:21.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:21.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:21.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:21.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:21.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:21.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:21.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:21.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:21.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:21.426][self$createEntryFromContent] Accession numbers: 17813.
biodb.TRACE[2023-10-14 11:07:21.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:21.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:21.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:21.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:21.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:21.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:21.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:21.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:21.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:21.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:21.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:21.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:21.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:21.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:21.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:21.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:21.454][private$loadEntries] Creating entries from ids [1]: "30109".
biodb.DEBUG[2023-10-14 11:07:21.455][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:07:21.457][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30109".
biodb.TRACE[2023-10-14 11:07:21.459][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:07:21.460][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:07:21.461][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:07:21.462][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:07:21.463][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:07:21.465][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:07:21.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:21.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:21.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:21.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:21.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:21.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:21.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:21.481][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.DEBUG[2023-10-14 11:07:21.485][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:21.486][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:21.487][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.TRACE[2023-10-14 11:07:22.139][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109).
biodb.DEBUG[2023-10-14 11:07:22.825][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:22.828][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.content"
biodb.TRACE[2023-10-14 11:07:22.832][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.request"
biodb.TRACE[2023-10-14 11:07:22.836][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30109.xml"
biodb.DEBUG[2023-10-14 11:07:22.838][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:07:22.840][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:07:22.841][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:07:22.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:22.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:22.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:22.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:22.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:22.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:22.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:22.860][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:22.862][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:22.863][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:22.864][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:22.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:22.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:22.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:22.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:22.871][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:22.872][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:22.874][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:22.875][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:22.877][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:22.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:22.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:22.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:22.882][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:22.884][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:22.885][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:22.886][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:22.888][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:22.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:22.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:22.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:22.893][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:22.895][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:22.896][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:22.897][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:22.898][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:22.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:22.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:22.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:22.904][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:22.905][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:22.906][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:22.907][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:22.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:22.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:22.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:22.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:22.914][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:22.915][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:22.916][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:22.917][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:22.919][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:22.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:22.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:22.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:22.936][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:22.937][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:22.938][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:22.940][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:22.941][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:22.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:22.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:22.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:22.946][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:22.947][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:22.948][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:22.950][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:22.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:22.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:22.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:22.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:22.956][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:22.957][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:22.958][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:22.959][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:22.961][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:22.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:22.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:22.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:22.966][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:22.967][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:22.968][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:22.969][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:22.971][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:22.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:22.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:22.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:22.975][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:22.977][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:22.978][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:22.979][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:22.980][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:22.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:22.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:22.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:22.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:22.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:22.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:22.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:22.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:22.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:22.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:22.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:22.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:22.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:22.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:22.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:22.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:23.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:23.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:23.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:23.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:23.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:23.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:23.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:23.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:23.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:23.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:23.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:23.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:23.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:23.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:23.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:23.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:23.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:23.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:23.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:23.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:23.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:23.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:23.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:23.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:23.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:23.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:23.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:23.053][self$createEntryFromContent] Accession numbers: 30109.
biodb.TRACE[2023-10-14 11:07:23.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:23.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:23.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:23.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:23.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:23.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:23.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:23.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:23.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:23.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:23.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:23.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:23.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:23.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:23.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:23.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:23.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:23.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:23.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:23.084][private$loadEntries] Creating entries from ids [1]: "33275".
biodb.DEBUG[2023-10-14 11:07:23.086][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:07:23.088][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33275".
biodb.TRACE[2023-10-14 11:07:23.089][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:07:23.091][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:07:23.092][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:07:23.094][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:07:23.095][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:07:23.096][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:07:23.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:23.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:23.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:23.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:23.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:23.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:23.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:23.115][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.DEBUG[2023-10-14 11:07:23.118][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:23.120][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:23.122][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.TRACE[2023-10-14 11:07:23.741][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275).
biodb.DEBUG[2023-10-14 11:07:24.390][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:24.392][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.content"
biodb.TRACE[2023-10-14 11:07:24.396][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.request"
biodb.TRACE[2023-10-14 11:07:24.400][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33275.xml"
biodb.DEBUG[2023-10-14 11:07:24.402][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:07:24.403][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:07:24.405][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:07:24.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:24.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:24.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:24.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:24.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:24.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:24.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:24.422][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:24.424][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:24.425][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.426][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:24.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:24.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.432][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:24.434][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:24.435][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.436][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.437][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:24.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:24.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.442][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:24.444][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:24.445][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.446][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.448][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:24.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:24.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.452][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:24.454][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:24.455][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.456][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:24.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:24.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.463][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:24.464][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:24.465][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.466][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:24.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:24.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.473][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:24.474][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:24.476][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.477][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.478][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:24.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:24.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.483][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:24.485][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:24.486][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.487][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.489][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:24.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:24.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.494][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:24.496][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:24.497][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.498][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:24.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:24.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.505][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:24.506][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:24.508][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.509][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.511][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:24.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:24.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.516][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:24.517][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:24.518][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.519][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.521][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:24.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:24.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.526][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:24.527][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:24.529][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.530][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.531][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:24.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:24.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:24.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:24.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:24.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:24.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:24.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:24.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:24.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:24.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:24.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:24.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:24.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:24.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:24.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:24.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:24.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:24.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:24.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:24.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:24.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:24.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:24.612][self$createEntryFromContent] Accession numbers: 33275.
biodb.TRACE[2023-10-14 11:07:24.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:24.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:24.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:24.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:24.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:24.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:24.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:24.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:24.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:24.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:24.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:24.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:24.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:24.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:24.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:24.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:24.642][private$loadEntries] Creating entries from ids [1]: "33277".
biodb.DEBUG[2023-10-14 11:07:24.644][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:07:24.646][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33277".
biodb.TRACE[2023-10-14 11:07:24.647][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:07:24.649][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:07:24.651][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:07:24.652][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:07:24.653][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:07:24.654][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:07:24.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:24.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:24.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:24.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:24.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:24.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:24.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:24.672][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.DEBUG[2023-10-14 11:07:24.676][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:24.677][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:24.679][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.TRACE[2023-10-14 11:07:25.320][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277).
biodb.DEBUG[2023-10-14 11:07:25.941][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:25.943][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.content"
biodb.TRACE[2023-10-14 11:07:25.948][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.request"
biodb.TRACE[2023-10-14 11:07:25.952][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33277.xml"
biodb.DEBUG[2023-10-14 11:07:25.954][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:07:25.956][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:07:25.957][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:07:25.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:25.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:25.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:25.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:25.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:25.980][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:25.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:25.988][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:25.989][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:25.990][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:25.991][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:25.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:25.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:25.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:25.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:25.998][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:25.999][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:26.000][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.001][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.003][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:26.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:26.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.008][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:26.048][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:26.051][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.052][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.054][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:26.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:26.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.060][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:26.103][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:26.105][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.106][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:26.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:26.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.160][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:26.163][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:26.164][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.165][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:26.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:26.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.182][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:26.184][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:26.186][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.189][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.191][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:26.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:26.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.197][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:26.201][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:26.203][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.205][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.208][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:26.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:26.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.217][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:26.218][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:26.220][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.221][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:26.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:26.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.232][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:26.233][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:26.235][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.236][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.238][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:26.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:26.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.245][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:26.246][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:26.248][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.249][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.250][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:26.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:26.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.256][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:26.257][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:26.258][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.259][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.261][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:26.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:26.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:26.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:26.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:26.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:26.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:26.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:26.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:26.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:26.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:26.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:26.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:26.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:26.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:26.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:26.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:26.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:26.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:26.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:26.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:26.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:26.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:26.316][self$createEntryFromContent] Accession numbers: 33277.
biodb.TRACE[2023-10-14 11:07:26.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:26.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:26.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:26.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:26.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:26.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:26.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:26.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:26.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:26.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:26.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:26.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:26.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:26.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:26.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:26.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:26.348][private$loadEntries] Creating entries from ids [1]: "52421".
biodb.DEBUG[2023-10-14 11:07:26.349][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:07:26.351][cch$loadFileContent] Trying to load 1 files from cache: [1]: "52421".
biodb.TRACE[2023-10-14 11:07:26.352][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:07:26.354][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:07:26.355][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:07:26.356][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:07:26.358][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:07:26.359][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:07:26.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:26.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:26.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:26.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:26.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:26.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:26.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:26.376][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.DEBUG[2023-10-14 11:07:26.379][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:26.381][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:26.382][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.TRACE[2023-10-14 11:07:26.890][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421).
biodb.DEBUG[2023-10-14 11:07:27.535][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:27.537][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.content"
biodb.TRACE[2023-10-14 11:07:27.542][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.request"
biodb.TRACE[2023-10-14 11:07:27.559][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52421.xml"
biodb.DEBUG[2023-10-14 11:07:27.561][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:07:27.562][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:07:27.564][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:07:27.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:27.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:27.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:27.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:27.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:27.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:27.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:27.583][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:27.584][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:27.585][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.586][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:27.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:27.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.593][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:27.594][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:27.595][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.596][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.598][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:27.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:27.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.603][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:27.604][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:27.605][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.606][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.608][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:27.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:27.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.612][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:27.614][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:27.615][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.616][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:27.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:27.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.622][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:27.624][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:27.625][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.626][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:27.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:27.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.632][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:27.633][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:27.635][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.636][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.637][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:27.638][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:27.640][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.641][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.642][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:27.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:27.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.647][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:27.648][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:27.649][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.650][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:27.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:27.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.657][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:27.658][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:27.659][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.660][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.662][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:27.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:27.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.667][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:27.668][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:27.669][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.670][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.672][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:27.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:27.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.677][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:27.678][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:27.679][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.681][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.682][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:27.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:27.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:27.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:27.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:27.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:27.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:27.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:27.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:27.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:27.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:27.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:27.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:27.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:27.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:27.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:27.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:27.735][self$createEntryFromContent] Accession numbers: 52421.
biodb.TRACE[2023-10-14 11:07:27.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:27.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:27.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:27.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:27.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:27.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:27.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:27.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:27.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:27.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:27.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:27.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:27.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:27.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:27.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:27.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:27.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:27.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:27.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:27.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:27.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:27.781][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:07:27.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:27.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:27.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:27.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:27.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:27.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:27.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:27.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.807][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:27.808][private$selectFields]
biodb.TRACE[2023-10-14 11:07:27.809][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:07:27.810][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:07:27.811][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:27.813][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.814][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.815][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.816][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.817][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.819][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.820][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.821][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.822][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:27.823][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:27.824][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.826][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.827][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.828][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.829][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:07:27.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.845][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2023-10-14 11:07:27.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:27.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:27.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:27.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:27.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:27.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:27.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:27.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.870][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:27.872][private$selectFields]
biodb.TRACE[2023-10-14 11:07:27.873][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:07:27.874][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:07:27.875][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:27.876][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.878][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.879][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.880][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.881][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.883][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.884][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.885][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.886][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:27.887][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:27.889][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.890][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.891][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.892][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.894][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:07:27.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.917][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-10-14 11:07:27.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:27.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:27.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:27.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:27.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:27.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:27.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:27.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.942][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:27.943][private$selectFields]
biodb.TRACE[2023-10-14 11:07:27.944][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:07:27.945][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:07:27.946][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:27.948][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.949][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.950][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.951][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.952][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.954][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.955][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.956][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.957][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:27.959][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:07:27.960][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.961][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.962][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.963][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.965][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:07:27.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:27.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:27.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:27.981][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2023-10-14 11:07:27.982][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:07:27.984][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:07:27.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:27.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:27.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:27.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:27.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:27.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:27.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:28.002][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:07:28.006][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:28.008][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:28.010][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2023-10-14 11:07:28.783][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2023-10-14 11:07:29.627][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:29.630][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content"
biodb.TRACE[2023-10-14 11:07:29.636][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.request"
biodb.DEBUG[2023-10-14 11:07:29.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:29.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:29.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:29.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:29.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:29.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:29.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:29.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:29.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:29.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:29.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:29.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:29.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:29.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:29.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:29.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:29.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:29.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:29.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:29.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:29.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:29.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:29.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:29.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:29.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:29.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:29.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:29.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:29.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:29.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:29.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:29.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:29.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:29.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:29.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:29.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:29.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:29.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:29.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:29.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:29.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:29.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:29.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:29.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:29.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:29.759][private$loadEntries] Creating entries from ids [1]: "65567".
biodb.DEBUG[2023-10-14 11:07:29.760][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:07:29.762][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65567".
biodb.TRACE[2023-10-14 11:07:29.764][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:07:29.765][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:07:29.766][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:07:29.768][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:07:29.769][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:07:29.770][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:07:29.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:29.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:29.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:29.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:29.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:29.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:29.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:29.787][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.DEBUG[2023-10-14 11:07:29.791][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:29.792][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:29.794][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.TRACE[2023-10-14 11:07:30.440][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567).
biodb.DEBUG[2023-10-14 11:07:31.088][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:31.090][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.content"
biodb.TRACE[2023-10-14 11:07:31.095][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.request"
biodb.TRACE[2023-10-14 11:07:31.099][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65567.xml"
biodb.DEBUG[2023-10-14 11:07:31.101][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:07:31.103][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:07:31.105][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:07:31.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:31.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:31.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:31.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:31.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:31.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:31.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:31.124][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:31.126][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:31.127][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.128][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:31.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:31.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.135][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:31.136][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:31.137][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.138][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.140][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:31.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:31.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.145][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:31.146][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:31.148][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.149][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.150][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:31.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:31.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.155][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:31.157][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:31.158][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.159][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:31.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:31.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.166][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:31.167][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:31.168][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.169][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:31.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:31.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.176][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:31.177][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:31.178][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.180][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.181][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:31.183][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:31.184][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.185][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.186][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:31.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:31.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.192][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:31.193][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:31.194][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.196][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:31.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:31.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.202][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:31.204][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:31.205][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.206][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.208][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:31.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:31.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.220][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:31.228][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:31.230][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.231][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.233][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:31.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:31.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.239][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:31.240][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:31.241][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.243][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.244][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:31.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:31.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:31.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:31.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:31.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:31.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:31.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:31.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:31.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:31.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:31.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:31.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:31.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:31.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:31.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:31.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:31.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:31.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:31.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:31.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:31.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:31.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:31.297][self$createEntryFromContent] Accession numbers: 65567.
biodb.TRACE[2023-10-14 11:07:31.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:31.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:31.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:31.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:31.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:31.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:31.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:31.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:31.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:31.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:31.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:31.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:31.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:31.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:31.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:31.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:31.327][private$loadEntries] Creating entries from ids [1]: "65576".
biodb.DEBUG[2023-10-14 11:07:31.328][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:07:31.330][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65576".
biodb.TRACE[2023-10-14 11:07:31.331][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:07:31.333][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:07:31.334][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:07:31.335][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:07:31.336][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:07:31.338][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:07:31.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:31.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:31.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:31.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:31.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:31.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:31.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:31.355][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.DEBUG[2023-10-14 11:07:31.358][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:31.360][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:31.361][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.TRACE[2023-10-14 11:07:32.018][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576).
biodb.DEBUG[2023-10-14 11:07:32.827][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:32.829][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.content"
biodb.TRACE[2023-10-14 11:07:32.834][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.request"
biodb.TRACE[2023-10-14 11:07:32.837][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65576.xml"
biodb.DEBUG[2023-10-14 11:07:32.839][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:07:32.841][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:07:32.842][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:07:32.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:32.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:32.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:32.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:32.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:32.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:32.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:32.860][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:32.862][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:32.863][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:32.864][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:32.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:32.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:32.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:32.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:32.871][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:32.872][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:32.874][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:32.875][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:32.877][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:32.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:32.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:32.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:32.882][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:32.883][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:32.884][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:32.885][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:32.887][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:32.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:32.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:32.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:32.892][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:32.893][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:32.894][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:32.895][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:32.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:32.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:32.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:32.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:32.902][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:32.903][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:32.904][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:32.905][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:32.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:32.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:32.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:32.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:32.911][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:32.913][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:32.914][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:32.915][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:32.917][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:32.918][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:32.919][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:32.920][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:32.922][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:32.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:32.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:32.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:32.927][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:32.928][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:32.929][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:32.930][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:32.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:32.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:32.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:32.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:32.937][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:32.938][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:32.939][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:32.940][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:32.942][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:32.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:32.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:32.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:32.947][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:32.948][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:32.950][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:32.951][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:32.952][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:32.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:32.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:32.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:32.957][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:32.959][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:32.960][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:32.961][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:32.962][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:32.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:32.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:32.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:32.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:32.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:32.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:32.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:32.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:32.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:32.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:32.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:32.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:32.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:32.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:32.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:32.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:32.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:32.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:32.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:32.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:32.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:32.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:32.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:32.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:32.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:32.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:32.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:32.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:32.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:33.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:33.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:33.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:33.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:33.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:33.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:33.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:33.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:33.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:33.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:33.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:33.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:33.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:33.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:33.018][self$createEntryFromContent] Accession numbers: 65576.
biodb.TRACE[2023-10-14 11:07:33.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:33.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:33.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:33.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:33.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:33.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:33.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:33.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:33.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:33.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:33.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:33.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:33.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:33.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:33.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:33.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:33.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:33.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:33.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:33.060][private$loadEntries] Creating entries from ids [1]: "66352".
biodb.DEBUG[2023-10-14 11:07:33.062][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:07:33.064][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66352".
biodb.TRACE[2023-10-14 11:07:33.065][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:07:33.066][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:07:33.068][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:07:33.069][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:07:33.070][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:07:33.071][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:07:33.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:33.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:33.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:33.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:33.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:33.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:33.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:33.089][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.DEBUG[2023-10-14 11:07:33.092][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:33.094][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:33.095][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.TRACE[2023-10-14 11:07:33.769][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352).
biodb.DEBUG[2023-10-14 11:07:34.404][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:34.407][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.content"
biodb.TRACE[2023-10-14 11:07:34.443][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.request"
biodb.TRACE[2023-10-14 11:07:34.446][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66352.xml"
biodb.DEBUG[2023-10-14 11:07:34.448][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:07:34.450][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:07:34.451][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:07:34.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:34.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:34.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:34.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:34.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:34.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:34.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:34.474][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:34.475][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:34.477][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.478][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:34.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:34.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.488][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:34.490][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:34.491][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.492][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.493][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:34.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:34.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.498][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:34.500][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:34.501][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.502][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.503][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:34.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:34.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.524][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:34.526][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:34.527][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.559][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.561][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:34.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:34.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.566][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:34.567][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:34.568][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.569][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.571][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:34.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:34.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.576][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:34.577][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:34.578][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.579][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.581][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:34.582][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:34.583][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.584][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.586][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:34.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:34.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.592][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:34.593][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:34.594][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.596][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:34.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:34.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.603][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:34.605][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:34.606][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.607][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.609][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:34.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:34.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.615][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:34.617][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:34.619][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.620][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.622][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:34.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:34.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.627][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:34.628][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:34.630][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.631][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.632][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:34.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:34.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:34.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:34.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:34.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:34.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:34.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:34.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:34.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:34.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:34.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:34.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:34.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:34.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:34.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:34.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:34.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:34.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:34.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:34.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:34.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:34.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:34.688][self$createEntryFromContent] Accession numbers: 66352.
biodb.TRACE[2023-10-14 11:07:34.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:34.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:34.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:34.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:34.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:34.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:34.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:34.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:34.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:34.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:34.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:34.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:34.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:34.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:34.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:34.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:34.718][private$loadEntries] Creating entries from ids [1]: "67567".
biodb.DEBUG[2023-10-14 11:07:34.720][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:07:34.722][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67567".
biodb.TRACE[2023-10-14 11:07:34.723][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:07:34.725][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:07:34.726][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:07:34.727][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:07:34.729][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:07:34.730][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:07:34.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:34.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:34.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:34.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:34.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:34.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:34.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:34.748][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.DEBUG[2023-10-14 11:07:34.751][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:34.753][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:34.754][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.TRACE[2023-10-14 11:07:35.396][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567).
biodb.DEBUG[2023-10-14 11:07:36.038][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:36.040][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.content"
biodb.TRACE[2023-10-14 11:07:36.045][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.request"
biodb.TRACE[2023-10-14 11:07:36.048][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67567.xml"
biodb.DEBUG[2023-10-14 11:07:36.050][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:07:36.052][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:07:36.053][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:07:36.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:36.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:36.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:36.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:36.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:36.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:36.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:36.071][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:36.073][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:36.074][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.076][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:36.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:36.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.083][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:36.084][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:36.085][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.087][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.088][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:36.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:36.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.107][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:36.109][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:36.110][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.111][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:36.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:36.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.118][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:36.119][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:36.121][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.122][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:36.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:36.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.129][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:36.130][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:36.131][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.132][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:36.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:36.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.139][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:36.140][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:36.141][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.142][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.144][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:36.145][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:36.146][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.147][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.149][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:36.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:36.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.154][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:36.155][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:36.156][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.157][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:36.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:36.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.164][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:36.165][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:36.167][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.168][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.169][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:36.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:36.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.175][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:36.176][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:36.177][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.179][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.180][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:36.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:36.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.185][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:36.186][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:36.188][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.189][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.190][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:36.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:36.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:36.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:36.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:36.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:36.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:36.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:36.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:36.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:36.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:36.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:36.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:36.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:36.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:36.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:36.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:36.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:36.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:36.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:36.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:36.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:36.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:36.246][self$createEntryFromContent] Accession numbers: 67567.
biodb.TRACE[2023-10-14 11:07:36.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:36.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:36.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:36.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:36.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:36.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:36.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:36.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:36.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:36.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:36.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:36.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:36.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:36.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:36.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:36.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:36.277][private$loadEntries] Creating entries from ids [1]: "67693".
biodb.DEBUG[2023-10-14 11:07:36.278][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:07:36.280][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67693".
biodb.TRACE[2023-10-14 11:07:36.282][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:07:36.283][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:07:36.285][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:07:36.286][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:07:36.287][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:07:36.288][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:07:36.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:36.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:36.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:36.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:36.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:36.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:36.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:36.306][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.DEBUG[2023-10-14 11:07:36.309][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:36.310][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:36.312][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.TRACE[2023-10-14 11:07:43.222][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693).
biodb.DEBUG[2023-10-14 11:07:43.851][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:43.854][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.content"
biodb.TRACE[2023-10-14 11:07:43.882][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.request"
biodb.TRACE[2023-10-14 11:07:43.885][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67693.xml"
biodb.DEBUG[2023-10-14 11:07:43.887][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:07:43.889][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:07:43.890][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:07:43.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:43.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:43.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:43.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:43.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:43.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:43.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:43.909][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:43.910][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:43.912][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:43.913][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:43.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:43.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:43.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:43.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:43.919][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:43.920][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:43.922][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:43.923][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:43.924][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:43.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:43.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:43.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:43.929][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:43.930][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:43.932][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:43.933][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:43.934][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:43.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:43.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:43.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:43.939][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:43.941][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:43.942][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:43.943][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:43.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:43.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:43.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:43.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:43.949][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:43.951][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:43.952][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:43.953][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:43.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:43.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:43.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:43.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:43.959][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:43.961][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:43.962][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:43.963][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:43.964][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:43.966][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:43.967][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:43.968][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:43.970][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:43.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:43.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:43.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:43.975][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:43.976][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:43.977][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:43.978][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:43.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:43.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:43.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:43.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:43.985][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:43.986][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:43.987][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:43.988][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:43.990][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:43.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:43.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:43.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:43.995][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:43.996][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:43.997][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:43.999][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:44.000][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:44.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:44.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:44.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:44.005][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:44.006][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:44.007][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:44.009][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:44.010][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:44.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:44.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:44.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:44.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:44.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:44.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:44.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:44.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:44.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:44.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:44.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:44.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:44.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:44.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:44.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:44.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:44.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:44.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:44.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:44.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:44.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:44.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:44.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:44.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:44.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:44.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:44.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:44.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:44.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:44.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:44.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:44.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:44.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:44.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:44.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:44.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:44.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:44.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:44.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:44.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:44.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:44.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:44.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:44.077][self$createEntryFromContent] Accession numbers: 67693.
biodb.TRACE[2023-10-14 11:07:44.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:44.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:44.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:44.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:44.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:44.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:44.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:44.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:44.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:44.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:44.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:44.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:44.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:44.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:44.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:44.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:44.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:44.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:44.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:44.108][private$loadEntries] Creating entries from ids [1]: "67700".
biodb.DEBUG[2023-10-14 11:07:44.109][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:07:44.111][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67700".
biodb.TRACE[2023-10-14 11:07:44.112][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:07:44.114][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:07:44.115][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:07:44.116][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:07:44.136][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:07:44.137][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:07:44.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:44.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:44.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:44.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:44.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:44.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:44.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:44.154][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.DEBUG[2023-10-14 11:07:44.179][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:44.180][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:44.182][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.TRACE[2023-10-14 11:07:44.787][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700).
biodb.DEBUG[2023-10-14 11:07:45.418][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:45.421][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.content"
biodb.TRACE[2023-10-14 11:07:45.455][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.request"
biodb.TRACE[2023-10-14 11:07:45.459][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67700.xml"
biodb.DEBUG[2023-10-14 11:07:45.461][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:07:45.462][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:07:45.464][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:07:45.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:45.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:45.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:45.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:45.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:45.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:45.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:45.483][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:45.485][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:45.486][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.488][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:45.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:45.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.495][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:45.496][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:45.499][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.500][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.501][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:45.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:45.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.507][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:45.508][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:45.510][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.511][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.512][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:45.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:45.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.517][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:45.518][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:45.520][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.521][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:45.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:45.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.527][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:45.528][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:45.529][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.531][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.532][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:45.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:45.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.537][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:45.538][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:45.539][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.540][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.542][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:45.543][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:45.544][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.545][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.547][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:45.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:45.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.552][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:45.553][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:45.554][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.555][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:45.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:45.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.561][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:45.563][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:45.564][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.565][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.567][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:45.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:45.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.572][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:45.573][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:45.574][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.575][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.577][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:45.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:45.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.581][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:45.583][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:45.584][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.585][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.586][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:45.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:45.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:45.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:45.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:45.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:45.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:45.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:45.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:45.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:45.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:45.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:45.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:45.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:45.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:45.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:45.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:45.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:45.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:45.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:45.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:45.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:45.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:45.642][self$createEntryFromContent] Accession numbers: 67700.
biodb.TRACE[2023-10-14 11:07:45.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:45.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:45.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:45.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:45.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:45.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:45.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:45.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:45.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:45.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:45.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:45.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:45.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:45.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:45.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:45.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:45.672][private$loadEntries] Creating entries from ids [1]: "67701".
biodb.DEBUG[2023-10-14 11:07:45.673][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:07:45.675][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67701".
biodb.TRACE[2023-10-14 11:07:45.677][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:07:45.678][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:07:45.680][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:07:45.681][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:07:45.682][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:07:45.684][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:07:45.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:45.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:45.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:45.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:45.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:45.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:45.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:45.713][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.DEBUG[2023-10-14 11:07:45.716][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:45.718][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:45.720][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.TRACE[2023-10-14 11:07:46.321][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701).
biodb.DEBUG[2023-10-14 11:07:46.948][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:46.950][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.content"
biodb.TRACE[2023-10-14 11:07:46.956][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.request"
biodb.TRACE[2023-10-14 11:07:46.959][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67701.xml"
biodb.DEBUG[2023-10-14 11:07:46.961][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:07:46.963][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:07:46.964][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:07:46.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:46.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:46.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:46.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:46.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:46.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:46.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:46.983][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:46.984][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:46.986][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:46.987][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:46.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:46.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:46.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:46.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:46.993][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:46.994][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:46.996][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:46.997][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:46.998][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:46.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:47.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:47.003][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:47.004][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:47.006][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.007][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:47.008][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:47.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:47.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:47.013][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:47.014][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:47.015][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.017][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:47.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:47.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:47.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:47.023][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:47.024][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:47.025][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.026][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:47.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:47.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:47.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:47.033][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:47.034][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:47.035][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.036][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:47.038][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:47.039][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:47.040][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.041][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:47.043][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:47.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:47.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:47.048][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:47.049][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:47.050][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.051][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:47.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:47.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:47.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:47.058][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:47.059][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:47.060][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.062][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:47.063][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:47.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:47.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:47.068][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:47.070][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:47.071][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.072][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:47.074][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:47.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:47.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:47.079][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:47.080][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:47.081][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.082][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:47.084][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:47.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:47.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:47.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:47.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:47.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:47.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:47.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:47.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:47.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:47.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:47.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:47.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:47.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:47.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:47.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:47.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:47.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:47.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:47.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:47.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:47.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:47.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:47.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:47.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:47.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:47.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:47.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:47.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:47.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:47.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:47.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:47.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:47.142][self$createEntryFromContent] Accession numbers: 67701.
biodb.TRACE[2023-10-14 11:07:47.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:47.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:47.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:47.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:47.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:47.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:47.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:47.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:47.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:47.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:47.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:47.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:47.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:47.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:47.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:47.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:47.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:47.173][private$loadEntries] Creating entries from ids [1]: "67705".
biodb.DEBUG[2023-10-14 11:07:47.174][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:07:47.176][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67705".
biodb.TRACE[2023-10-14 11:07:47.178][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:07:47.179][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:07:47.181][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:07:47.182][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:07:47.184][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:07:47.185][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:07:47.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:47.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:47.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:47.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:47.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:47.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:47.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:47.205][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.DEBUG[2023-10-14 11:07:47.209][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:47.210][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:47.212][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.TRACE[2023-10-14 11:07:47.835][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705).
biodb.DEBUG[2023-10-14 11:07:48.520][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:48.524][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.content"
biodb.TRACE[2023-10-14 11:07:48.529][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.request"
biodb.TRACE[2023-10-14 11:07:48.532][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67705.xml"
biodb.DEBUG[2023-10-14 11:07:48.535][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:07:48.536][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:07:48.538][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:07:48.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:48.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:48.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:48.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:48.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:48.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:48.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:48.556][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:48.558][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:48.559][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.560][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:48.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:48.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.567][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:48.569][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:48.570][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.571][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.573][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:48.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:48.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.578][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:48.579][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:48.580][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.581][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.583][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:48.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:48.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.588][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:48.590][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:48.591][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.592][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:48.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:48.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.612][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:48.613][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:48.614][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.615][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:48.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:48.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.622][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:48.624][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:48.625][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.626][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.628][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:48.629][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:48.630][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.632][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.633][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:48.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:48.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.638][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:48.640][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:48.641][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.642][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:48.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:48.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.648][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:48.650][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:48.651][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.652][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.654][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:48.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:48.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.659][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:48.677][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:48.678][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.680][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.681][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:48.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:48.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.686][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:48.687][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:48.688][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.689][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.691][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:48.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:48.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:48.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:48.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:48.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:48.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:48.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:48.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:48.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:48.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:48.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:48.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:48.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:48.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:48.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:48.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:48.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:48.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:48.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:48.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:48.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:48.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:48.745][self$createEntryFromContent] Accession numbers: 67705.
biodb.TRACE[2023-10-14 11:07:48.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:48.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:48.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:48.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:48.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:48.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:48.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:48.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:48.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:48.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:48.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:48.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:48.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:48.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:48.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:48.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:48.776][private$loadEntries] Creating entries from ids [1]: "75265".
biodb.DEBUG[2023-10-14 11:07:48.777][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:07:48.779][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75265".
biodb.TRACE[2023-10-14 11:07:48.781][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:07:48.782][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:07:48.784][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:07:48.785][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:07:48.786][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:07:48.787][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:07:48.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:48.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:48.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:48.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:48.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:48.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:48.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:48.805][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.DEBUG[2023-10-14 11:07:48.809][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:48.810][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:48.812][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.TRACE[2023-10-14 11:07:49.426][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265).
biodb.DEBUG[2023-10-14 11:07:50.046][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:50.048][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.content"
biodb.TRACE[2023-10-14 11:07:50.052][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.request"
biodb.TRACE[2023-10-14 11:07:50.075][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75265.xml"
biodb.DEBUG[2023-10-14 11:07:50.078][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:07:50.080][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:07:50.082][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:07:50.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:50.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:50.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:50.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:50.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:50.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:50.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:50.102][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:50.104][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:50.105][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.106][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:50.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:50.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.112][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:50.114][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:50.115][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.116][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.118][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:50.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:50.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.122][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:50.124][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:50.125][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.126][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:50.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:50.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.132][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:50.134][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:50.135][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.136][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.137][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:50.139][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:50.140][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.141][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.143][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:50.144][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:50.145][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.146][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.147][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:50.149][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:50.150][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.151][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.153][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:50.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:50.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.158][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:50.159][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:50.160][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.161][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:50.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:50.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.169][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:50.170][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:50.171][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.172][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.174][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:50.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:50.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.181][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:50.182][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:50.183][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.184][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.186][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:50.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:50.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.191][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:50.192][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:50.193][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.194][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.196][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:50.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:50.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:50.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:50.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:50.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:50.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:50.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:50.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:50.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:50.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:50.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:50.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:50.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:50.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:50.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:50.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:50.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:50.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:50.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:50.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:50.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:50.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:50.259][self$createEntryFromContent] Accession numbers: 75265.
biodb.TRACE[2023-10-14 11:07:50.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:50.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:50.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:50.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:50.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:50.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:50.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:50.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:50.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:50.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:50.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:50.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:50.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:50.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:50.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:50.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:50.289][private$loadEntries] Creating entries from ids [1]: "77370".
biodb.DEBUG[2023-10-14 11:07:50.290][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:07:50.292][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77370".
biodb.TRACE[2023-10-14 11:07:50.293][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:07:50.295][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:07:50.296][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:07:50.297][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:07:50.298][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:07:50.299][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:07:50.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:50.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:50.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:50.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:50.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:50.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:50.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:50.317][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.DEBUG[2023-10-14 11:07:50.320][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:50.322][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:50.323][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.TRACE[2023-10-14 11:07:50.988][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370).
biodb.DEBUG[2023-10-14 11:07:51.634][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:51.636][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.content"
biodb.TRACE[2023-10-14 11:07:51.640][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.request"
biodb.TRACE[2023-10-14 11:07:51.644][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77370.xml"
biodb.DEBUG[2023-10-14 11:07:51.646][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:07:51.647][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:07:51.649][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:07:51.651][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:51.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:51.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:51.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:51.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:51.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:51.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:51.668][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:51.669][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:51.670][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.671][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:51.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:51.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.678][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:51.679][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:51.680][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.682][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.683][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:51.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:51.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.688][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:51.690][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:51.691][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.692][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.693][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:51.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:51.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.698][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:51.700][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:51.701][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.702][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.704][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:51.705][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:51.706][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.707][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.709][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:51.710][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:51.711][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.713][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.714][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:51.715][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:51.717][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.718][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.719][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:51.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:51.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.724][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:51.726][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:51.727][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.728][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:51.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:51.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.735][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:51.736][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:51.737][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.738][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.740][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:51.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:51.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.745][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:51.747][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:51.748][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.749][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.750][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:51.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:51.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.756][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:51.757][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:51.758][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.759][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.761][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:51.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:51.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:51.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:51.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:51.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:51.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:51.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:51.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:51.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:51.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:51.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:51.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:51.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:51.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:51.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:51.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:51.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:51.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:51.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:51.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:51.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:51.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:51.819][self$createEntryFromContent] Accession numbers: 77370.
biodb.TRACE[2023-10-14 11:07:51.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:51.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:51.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:51.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:51.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:51.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:51.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:51.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:51.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:51.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:51.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:51.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:51.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:51.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:51.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:51.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:51.853][private$loadEntries] Creating entries from ids [1]: "79074".
biodb.DEBUG[2023-10-14 11:07:51.854][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:07:51.856][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79074".
biodb.TRACE[2023-10-14 11:07:51.858][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:07:51.859][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:07:51.861][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:07:51.862][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:07:51.863][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:07:51.864][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:07:51.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:51.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:51.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:51.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:51.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:51.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:51.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:51.882][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.DEBUG[2023-10-14 11:07:51.886][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:51.887][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:51.889][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.TRACE[2023-10-14 11:07:52.521][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074).
biodb.DEBUG[2023-10-14 11:07:53.172][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:53.174][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.content"
biodb.TRACE[2023-10-14 11:07:53.178][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.request"
biodb.TRACE[2023-10-14 11:07:53.182][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79074.xml"
biodb.DEBUG[2023-10-14 11:07:53.184][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:07:53.186][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:07:53.205][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:07:53.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:53.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:53.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:53.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:53.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:53.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:53.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:53.225][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:53.226][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:53.227][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.229][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:53.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:53.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.236][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:53.237][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:53.238][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.239][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.241][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:53.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:53.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.246][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:53.247][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:53.248][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.249][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.251][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:53.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:53.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.273][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:53.275][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:53.276][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.277][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:53.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:53.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.284][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:53.285][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:53.287][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.288][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:53.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:53.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.296][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:53.298][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:53.299][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.300][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.301][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:53.303][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:53.304][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.306][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.308][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:53.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:53.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.313][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:53.315][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:53.316][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.317][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:53.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:53.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.324][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:53.325][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:53.326][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.327][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.329][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:53.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:53.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.334][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:53.336][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:53.337][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.338][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.340][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:53.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:53.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.347][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:53.348][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:53.349][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.351][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.352][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:53.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:53.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:53.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:53.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:53.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:53.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:53.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:53.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:53.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:53.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:53.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:53.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:53.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:53.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:53.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:53.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:53.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:53.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:53.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:53.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:53.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:53.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:53.412][self$createEntryFromContent] Accession numbers: 79074.
biodb.TRACE[2023-10-14 11:07:53.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:53.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:53.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:53.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:53.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:53.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:53.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:53.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:53.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:53.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:53.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:53.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:53.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:53.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:53.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:53.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:53.442][private$loadEntries] Creating entries from ids [1]: "79302".
biodb.DEBUG[2023-10-14 11:07:53.443][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:07:53.445][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79302".
biodb.TRACE[2023-10-14 11:07:53.446][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:07:53.447][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:07:53.449][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:07:53.450][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:07:53.451][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:07:53.452][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:07:53.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:53.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:53.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:53.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:53.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:53.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:53.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:53.469][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.DEBUG[2023-10-14 11:07:53.473][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:53.474][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:53.475][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.TRACE[2023-10-14 11:07:54.120][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302).
biodb.DEBUG[2023-10-14 11:07:54.691][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:54.694][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.content"
biodb.TRACE[2023-10-14 11:07:54.698][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.request"
biodb.TRACE[2023-10-14 11:07:54.702][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79302.xml"
biodb.DEBUG[2023-10-14 11:07:54.704][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:07:54.706][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:07:54.708][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:07:54.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:54.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:54.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:54.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:54.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:54.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:54.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:54.726][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:54.728][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:54.729][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.730][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:54.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:54.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.737][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:54.739][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:54.740][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.741][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.743][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:54.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:54.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.748][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:54.749][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:54.750][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.751][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.753][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:54.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:54.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.758][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:54.760][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:54.761][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.762][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.764][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:54.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:54.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.768][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:54.770][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:54.771][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.772][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.774][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:54.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:54.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.779][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:54.780][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:54.781][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.782][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.784][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:54.785][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:54.786][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.787][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.789][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:54.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:54.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.794][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:54.795][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:54.796][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.798][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:54.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:54.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.811][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:54.815][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:54.817][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.818][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.820][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:54.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:54.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.826][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:54.827][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:54.828][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.829][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.831][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:54.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:54.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.836][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:54.838][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:54.839][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.840][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.841][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:54.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:54.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:54.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:54.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:54.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:54.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:54.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:54.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:54.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:54.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:54.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:54.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:54.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:54.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:54.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:54.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:54.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:54.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:54.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:54.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:54.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:54.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:54.895][self$createEntryFromContent] Accession numbers: 79302.
biodb.TRACE[2023-10-14 11:07:54.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:54.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:54.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:54.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:54.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:54.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:54.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:54.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:54.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:54.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:54.912][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:54.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:54.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:54.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:54.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:54.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:54.940][private$loadEntries] Creating entries from ids [1]: "84164".
biodb.DEBUG[2023-10-14 11:07:54.941][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:07:54.943][cch$loadFileContent] Trying to load 1 files from cache: [1]: "84164".
biodb.TRACE[2023-10-14 11:07:54.945][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:07:54.946][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:07:54.947][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:07:54.949][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:07:54.950][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:07:54.951][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:07:54.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:54.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:54.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:54.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:54.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:54.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:54.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:54.969][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.DEBUG[2023-10-14 11:07:54.972][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:54.974][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:54.975][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.TRACE[2023-10-14 11:07:55.622][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164).
biodb.DEBUG[2023-10-14 11:07:56.262][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:56.265][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.content"
biodb.TRACE[2023-10-14 11:07:56.270][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.request"
biodb.TRACE[2023-10-14 11:07:56.273][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/84164.xml"
biodb.DEBUG[2023-10-14 11:07:56.275][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:07:56.277][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:07:56.278][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:07:56.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:56.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:56.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:56.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:56.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:56.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:56.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:56.295][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:56.297][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:56.298][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.299][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:56.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:56.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.306][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:56.308][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:56.309][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.310][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.312][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:56.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:56.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.317][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:56.318][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:56.320][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.321][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.322][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:56.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:56.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.327][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:56.329][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:56.330][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.331][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:56.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:56.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.338][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:56.339][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:56.340][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.342][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.343][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:56.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:56.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.349][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:56.350][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:56.351][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.352][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.354][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:56.355][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:56.356][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.358][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.359][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:56.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:56.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.364][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:56.365][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:56.367][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.368][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:56.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:56.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.374][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:56.376][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:56.377][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.378][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.380][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:56.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:56.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.385][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:56.386][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:56.387][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.388][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.390][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:56.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:56.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.395][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:56.397][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:56.398][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.399][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.401][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:56.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:56.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:56.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:56.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:56.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:56.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:56.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:56.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:56.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:56.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:56.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:56.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:56.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:56.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:56.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:56.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:56.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:56.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:56.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:56.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:56.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:56.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:56.454][self$createEntryFromContent] Accession numbers: 84164.
biodb.TRACE[2023-10-14 11:07:56.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:56.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:56.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:56.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:56.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:56.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:56.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:56.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:56.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:56.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:56.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:56.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:56.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:56.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:56.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:56.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:56.495][private$loadEntries] Creating entries from ids [1]: "132314".
biodb.DEBUG[2023-10-14 11:07:56.496][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:07:56.498][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132314".
biodb.TRACE[2023-10-14 11:07:56.500][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:07:56.501][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:07:56.502][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:07:56.504][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:07:56.523][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:07:56.524][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:07:56.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:56.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:56.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:56.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:56.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:56.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:56.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:56.542][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.DEBUG[2023-10-14 11:07:56.545][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:56.547][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:56.548][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.TRACE[2023-10-14 11:07:57.177][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314).
biodb.DEBUG[2023-10-14 11:07:57.825][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:57.828][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.content"
biodb.TRACE[2023-10-14 11:07:57.832][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.request"
biodb.TRACE[2023-10-14 11:07:57.836][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132314.xml"
biodb.DEBUG[2023-10-14 11:07:57.838][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:07:57.840][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:07:57.841][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:07:57.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:57.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:57.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:57.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:57.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:57.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:57.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:57.859][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:57.861][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:57.862][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:57.863][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:57.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:57.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:57.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:57.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:57.869][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:57.871][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:57.872][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:57.873][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:57.875][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:57.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:57.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:57.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:57.880][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:57.881][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:57.883][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:57.884][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:57.885][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:57.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:57.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:57.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:57.891][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:57.892][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:57.893][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:57.895][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:57.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:57.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:57.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:57.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:57.901][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:57.902][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:57.904][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:57.905][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:57.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:57.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:57.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:57.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:57.911][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:57.913][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:57.914][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:57.915][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:57.916][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:57.918][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:57.919][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:57.920][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:57.922][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:57.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:57.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:57.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:57.927][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:57.928][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:57.930][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:57.931][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:57.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:57.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:57.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:57.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:57.937][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:57.939][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:57.940][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:57.941][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:57.943][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:57.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:57.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:57.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:57.948][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:57.950][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:57.951][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:57.952][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:57.954][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:57.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:57.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:57.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:57.959][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:57.960][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:57.961][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:57.962][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:57.964][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:57.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:57.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:57.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:57.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:57.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:57.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:57.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:57.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:57.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:57.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:57.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:57.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:57.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:57.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:57.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:57.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:57.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:57.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:57.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:57.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:57.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:57.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:57.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:57.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:57.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:57.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:57.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:57.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:58.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:58.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:58.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:58.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:58.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:58.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:58.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:58.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:58.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:58.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:58.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:58.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:58.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:58.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:58.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:58.019][self$createEntryFromContent] Accession numbers: 132314.
biodb.TRACE[2023-10-14 11:07:58.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:58.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:58.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:58.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:58.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:58.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:58.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:58.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:58.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:58.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:58.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:58.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:58.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:58.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:58.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:58.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:58.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:58.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:58.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:58.051][private$loadEntries] Creating entries from ids [1]: "132338".
biodb.DEBUG[2023-10-14 11:07:58.052][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:07:58.054][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132338".
biodb.TRACE[2023-10-14 11:07:58.056][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:07:58.057][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:07:58.058][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:07:58.060][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:07:58.061][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:07:58.062][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:07:58.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:58.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:58.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:58.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:58.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:58.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:58.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:58.081][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.DEBUG[2023-10-14 11:07:58.084][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:58.086][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:58.088][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.TRACE[2023-10-14 11:07:58.707][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338).
biodb.DEBUG[2023-10-14 11:07:59.349][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:07:59.351][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.content"
biodb.TRACE[2023-10-14 11:07:59.356][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.request"
biodb.TRACE[2023-10-14 11:07:59.359][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132338.xml"
biodb.DEBUG[2023-10-14 11:07:59.361][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:07:59.363][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:07:59.364][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:07:59.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:59.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:59.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:59.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:59.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:59.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:59.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:07:59.382][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:59.384][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:59.385][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.386][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:59.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:59.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.407][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:59.408][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:59.410][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.411][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.412][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:07:59.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:07:59.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.417][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:59.419][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:59.420][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.421][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.423][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:07:59.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:07:59.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.428][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:59.429][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:59.430][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.431][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:07:59.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:07:59.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.438][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:59.439][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:59.441][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.442][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:07:59.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:07:59.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.449][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:59.450][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:07:59.451][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.452][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.454][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:59.455][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:59.456][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.457][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.459][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:07:59.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:07:59.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.464][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:59.465][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:59.466][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.467][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:59.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:59.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.474][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:59.475][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:59.476][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.477][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.479][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:07:59.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:07:59.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.484][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:59.485][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:59.487][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.488][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.489][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:07:59.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:07:59.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.494][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:59.496][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:59.497][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.498][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.499][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:07:59.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:07:59.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:59.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:59.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:59.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:59.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:59.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:59.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:07:59.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:07:59.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:59.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:59.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:59.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:59.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:59.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:59.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:59.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:59.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:59.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:59.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:07:59.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:07:59.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:59.552][self$createEntryFromContent] Accession numbers: 132338.
biodb.TRACE[2023-10-14 11:07:59.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:59.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:59.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:59.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:59.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:07:59.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:59.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:07:59.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:07:59.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:07:59.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:59.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:59.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:59.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:59.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:59.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:59.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:59.581][private$loadEntries] Creating entries from ids [1]: "139019".
biodb.DEBUG[2023-10-14 11:07:59.582][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:07:59.584][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139019".
biodb.TRACE[2023-10-14 11:07:59.586][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:07:59.587][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:07:59.588][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:07:59.590][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:07:59.591][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:07:59.592][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:07:59.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:07:59.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:07:59.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:07:59.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:07:59.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:07:59.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:07:59.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:07:59.609][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.DEBUG[2023-10-14 11:07:59.612][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:07:59.613][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:07:59.615][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.TRACE[2023-10-14 11:08:00.306][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019).
biodb.DEBUG[2023-10-14 11:08:01.009][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:08:01.012][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.content"
biodb.TRACE[2023-10-14 11:08:01.016][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.request"
biodb.TRACE[2023-10-14 11:08:01.020][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139019.xml"
biodb.DEBUG[2023-10-14 11:08:01.022][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:08:01.023][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:08:01.025][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:08:01.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:01.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:01.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:01.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:01.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:01.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:01.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:01.043][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:01.044][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:01.045][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.046][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:01.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:01.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.054][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:01.055][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:01.056][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.057][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.059][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:01.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:01.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.064][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:01.065][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:01.066][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.067][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.069][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:01.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:01.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.074][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:01.075][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:01.077][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.078][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:01.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:01.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.084][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:01.085][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:01.087][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.088][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:01.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:01.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.113][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:01.114][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:01.116][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.117][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.118][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:08:01.119][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:01.121][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.122][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.123][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:08:01.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:01.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.128][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:01.129][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:01.131][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.132][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:01.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:01.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.138][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:01.140][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:01.141][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.142][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.144][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:01.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:01.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.149][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:08:01.151][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:01.152][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.154][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.155][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:08:01.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:01.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.160][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:01.161][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:01.162][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.164][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.171][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:01.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:01.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:01.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:01.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:01.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:01.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:01.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:01.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:01.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:01.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:01.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:01.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:01.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:01.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:01.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:01.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:01.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:01.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:01.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:01.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:01.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:01.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:01.234][self$createEntryFromContent] Accession numbers: 139019.
biodb.TRACE[2023-10-14 11:08:01.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:01.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:01.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:01.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:01.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:01.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:01.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:01.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:01.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:01.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:01.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:01.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:01.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:01.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:01.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:01.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:01.264][private$loadEntries] Creating entries from ids [1]: "139367".
biodb.DEBUG[2023-10-14 11:08:01.266][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:08:01.268][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139367".
biodb.TRACE[2023-10-14 11:08:01.269][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:08:01.271][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:08:01.272][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:08:01.273][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:08:01.274][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:08:01.275][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:08:01.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:01.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:01.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:01.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:01.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:01.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:01.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:01.293][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.DEBUG[2023-10-14 11:08:01.296][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:08:01.298][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:08:01.299][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.TRACE[2023-10-14 11:08:01.937][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367).
biodb.DEBUG[2023-10-14 11:08:02.676][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:08:02.678][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.content"
biodb.TRACE[2023-10-14 11:08:02.683][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.request"
biodb.TRACE[2023-10-14 11:08:02.686][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139367.xml"
biodb.DEBUG[2023-10-14 11:08:02.688][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:08:02.691][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:08:02.692][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:08:02.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:02.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:02.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:02.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:02.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:02.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:02.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:02.710][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:02.712][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:02.713][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.714][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:02.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:02.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.721][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:02.722][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:02.724][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.725][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.726][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:02.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:02.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.732][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:02.733][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:02.734][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.735][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.737][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:02.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:02.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.742][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:02.743][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:02.744][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.746][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:02.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:02.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.752][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:02.754][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:02.755][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.756][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:02.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:02.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.763][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:02.764][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:02.765][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.766][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.768][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:08:02.769][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:02.770][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.771][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.773][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:08:02.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:02.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.778][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:02.779][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:02.780][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.781][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:02.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:02.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.788][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:02.789][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:02.790][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.791][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.793][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:02.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:02.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.798][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:08:02.799][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:02.800][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.802][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.803][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:08:02.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:02.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.808][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:02.809][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:02.810][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.811][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.813][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:02.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:02.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:02.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:02.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:02.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:02.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:02.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:02.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:02.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:02.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:02.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:02.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:02.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:02.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:02.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:02.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:02.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:02.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:02.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:02.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:02.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:02.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:02.867][self$createEntryFromContent] Accession numbers: 139367.
biodb.TRACE[2023-10-14 11:08:02.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:02.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:02.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:02.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:02.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:02.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:02.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:02.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:02.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:02.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:02.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:02.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:02.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:02.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:02.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:02.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:02.898][private$loadEntries] Creating entries from ids [1]: "145029".
biodb.DEBUG[2023-10-14 11:08:02.899][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:08:02.901][cch$loadFileContent] Trying to load 1 files from cache: [1]: "145029".
biodb.TRACE[2023-10-14 11:08:02.903][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:08:02.904][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:08:02.906][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:08:02.917][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:08:02.918][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:08:02.920][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:08:02.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:02.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:02.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:02.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:02.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:02.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:02.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:02.939][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.DEBUG[2023-10-14 11:08:02.943][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:08:02.944][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:08:02.946][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.TRACE[2023-10-14 11:08:03.593][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029).
biodb.DEBUG[2023-10-14 11:08:04.316][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:08:04.318][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.content"
biodb.TRACE[2023-10-14 11:08:04.323][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.request"
biodb.TRACE[2023-10-14 11:08:04.326][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/145029.xml"
biodb.DEBUG[2023-10-14 11:08:04.328][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:08:04.330][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:08:04.331][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:08:04.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:04.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:04.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:04.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:04.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:04.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:04.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:04.349][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:04.350][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:04.352][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.353][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:04.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:04.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.359][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:04.360][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:04.361][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.362][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.364][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:04.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:04.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.369][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:04.370][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:04.371][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.372][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.374][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:04.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:04.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.379][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:04.380][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:04.381][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.382][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:04.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:04.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.388][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:04.390][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:04.391][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.392][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:04.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:04.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.398][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:04.400][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:04.401][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.402][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.403][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:08:04.405][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:04.406][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.407][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.409][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:08:04.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:04.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.414][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:04.415][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:04.416][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.417][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:04.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:04.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.424][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:04.425][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:04.426][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.427][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.429][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:04.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:04.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.434][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:08:04.435][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:04.437][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.438][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.439][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:08:04.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:04.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.444][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:04.445][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:04.447][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.448][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.449][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:04.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:04.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:04.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:04.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:04.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:04.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:04.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:04.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:04.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:04.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:04.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:04.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:04.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:04.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:04.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:04.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:04.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:04.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:04.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:04.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:04.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:04.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:04.504][self$createEntryFromContent] Accession numbers: 145029.
biodb.TRACE[2023-10-14 11:08:04.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:04.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:04.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:04.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:04.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:04.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:04.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:04.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:04.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:04.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:04.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:04.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:04.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:04.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:04.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:04.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:04.536][private$loadEntries] Creating entries from ids [1]: "173077".
biodb.DEBUG[2023-10-14 11:08:04.537][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:08:04.539][cch$loadFileContent] Trying to load 1 files from cache: [1]: "173077".
biodb.TRACE[2023-10-14 11:08:04.541][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:08:04.542][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:08:04.543][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:08:04.545][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:08:04.546][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:08:04.547][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:08:04.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:04.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:04.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:04.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:04.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:04.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:04.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:04.567][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.DEBUG[2023-10-14 11:08:04.571][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:08:04.572][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:08:04.574][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.TRACE[2023-10-14 11:08:05.241][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077).
biodb.DEBUG[2023-10-14 11:08:05.996][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:08:05.998][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.content"
biodb.TRACE[2023-10-14 11:08:06.003][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.request"
biodb.TRACE[2023-10-14 11:08:06.007][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/173077.xml"
biodb.DEBUG[2023-10-14 11:08:06.009][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:08:06.011][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:08:06.012][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:08:06.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:06.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:06.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:06.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:06.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:06.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:06.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:06.032][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:06.034][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:06.035][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.036][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:06.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:06.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.043][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:06.044][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:06.045][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.046][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.048][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:06.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:06.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.053][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:06.054][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:06.055][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.056][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.058][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:06.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:06.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.063][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:06.077][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:06.078][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.079][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:06.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:06.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.086][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:06.087][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:06.089][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.090][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:06.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:06.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.096][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:06.097][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:06.099][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.100][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.101][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:08:06.103][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:06.104][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.105][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.106][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:08:06.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:06.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.111][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:06.113][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:06.114][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.115][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:06.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:06.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.121][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:06.123][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:06.124][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.125][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.127][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:06.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:06.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.133][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:08:06.135][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:06.136][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.137][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.139][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:08:06.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:06.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.145][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:06.146][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:06.147][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.149][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.150][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:06.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:06.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:06.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:06.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:06.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:06.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:06.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:06.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:06.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:06.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:06.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:06.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:06.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:06.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:06.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:06.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:06.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:06.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:06.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:06.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:06.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:06.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:06.206][self$createEntryFromContent] Accession numbers: 173077.
biodb.TRACE[2023-10-14 11:08:06.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:06.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:06.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:06.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:06.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:06.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:06.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:06.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:06.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:06.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:06.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:06.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:06.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:06.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:06.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:06.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:06.237][private$loadEntries] Creating entries from ids [1]: "365445".
biodb.DEBUG[2023-10-14 11:08:06.238][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:08:06.241][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365445".
biodb.TRACE[2023-10-14 11:08:06.242][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:08:06.244][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:08:06.245][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:08:06.246][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:08:06.247][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:08:06.249][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:08:06.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:06.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:06.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:06.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:06.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:06.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:06.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:06.267][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.DEBUG[2023-10-14 11:08:06.271][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:08:06.272][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:08:06.274][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.TRACE[2023-10-14 11:08:06.932][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445).
biodb.DEBUG[2023-10-14 11:08:07.566][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:08:07.568][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.content"
biodb.TRACE[2023-10-14 11:08:07.573][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.request"
biodb.TRACE[2023-10-14 11:08:07.577][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365445.xml"
biodb.DEBUG[2023-10-14 11:08:07.602][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:08:07.605][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:08:07.607][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:08:07.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:07.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:07.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:07.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:07.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:07.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:07.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:07.626][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:07.627][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:07.628][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.629][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:07.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:07.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.636][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:07.637][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:07.638][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.639][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.641][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:07.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:07.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.646][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:07.647][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:07.648][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.649][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.651][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:07.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:07.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.656][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:07.657][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:07.658][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.659][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.661][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:07.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:07.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.667][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:07.668][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:07.669][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.671][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:07.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:07.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.678][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:07.679][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:07.681][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.682][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.684][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:08:07.685][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:07.686][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.687][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.689][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:08:07.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:07.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.698][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:07.700][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:07.701][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.702][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:07.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:07.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.709][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:07.710][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:07.711][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.712][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.714][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:07.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:07.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.719][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:08:07.721][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:07.722][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.723][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.725][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:08:07.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:07.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.730][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:07.731][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:07.732][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.733][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.735][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:07.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:07.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:07.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:07.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:07.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:07.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:07.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:07.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:07.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:07.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:07.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:07.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:07.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:07.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:07.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:07.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:07.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:07.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:07.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:07.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:07.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:07.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:07.803][self$createEntryFromContent] Accession numbers: 365445.
biodb.TRACE[2023-10-14 11:08:07.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:07.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:07.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:07.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:07.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:07.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:07.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:07.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:07.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:07.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:07.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:07.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:07.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:07.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:07.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:07.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:07.835][private$loadEntries] Creating entries from ids [1]: "32151".
biodb.DEBUG[2023-10-14 11:08:07.836][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:08:07.838][cch$loadFileContent] Trying to load 1 files from cache: [1]: "32151".
biodb.TRACE[2023-10-14 11:08:07.840][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:08:07.842][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:08:07.843][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:08:07.844][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:08:07.846][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:08:07.847][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:08:07.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:07.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:07.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:07.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:07.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:07.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:07.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:07.865][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.DEBUG[2023-10-14 11:08:07.869][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:08:07.870][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:08:07.872][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.TRACE[2023-10-14 11:08:08.518][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151).
biodb.DEBUG[2023-10-14 11:08:09.166][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:08:09.168][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.content"
biodb.TRACE[2023-10-14 11:08:09.173][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.request"
biodb.TRACE[2023-10-14 11:08:09.176][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32151.xml"
biodb.DEBUG[2023-10-14 11:08:09.179][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:08:09.180][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:08:09.182][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:08:09.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:09.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:09.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:09.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:09.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:09.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:09.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:09.200][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:09.202][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:09.203][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.204][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:09.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:09.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.211][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:09.212][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:09.213][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.215][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.216][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:09.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:09.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.221][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:09.222][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:09.223][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.225][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.226][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:09.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:09.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.231][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:09.233][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:09.234][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.235][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:09.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:09.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.241][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:09.242][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:09.243][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.245][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:09.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:09.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.251][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:09.252][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:09.254][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.255][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.256][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:08:09.258][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:09.259][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.260][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.262][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:08:09.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:09.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.267][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:09.268][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:09.270][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.271][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:09.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:09.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.278][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:09.279][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:09.280][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.282][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.283][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:09.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:09.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.289][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:08:09.290][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:09.291][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.293][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.294][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:08:09.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:09.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.299][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:09.301][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:09.302][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.303][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.304][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:09.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:09.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:09.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:09.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:09.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:09.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:09.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:09.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:09.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:09.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:09.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:09.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:09.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:09.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:09.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:09.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:09.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:09.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:09.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:09.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:09.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:09.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:09.359][self$createEntryFromContent] Accession numbers: 32151.
biodb.TRACE[2023-10-14 11:08:09.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:09.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:09.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:09.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:09.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:09.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:09.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:09.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:09.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:09.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:09.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:09.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:09.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:09.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:09.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:09.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:09.391][private$loadEntries] Creating entries from ids [1]: "67676".
biodb.DEBUG[2023-10-14 11:08:09.392][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:08:09.394][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67676".
biodb.TRACE[2023-10-14 11:08:09.396][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:08:09.397][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:08:09.398][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:08:09.400][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:08:09.401][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:08:09.402][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:08:09.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:09.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:09.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:09.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:09.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:09.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:09.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:09.431][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.DEBUG[2023-10-14 11:08:09.436][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:08:09.437][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:08:09.439][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.TRACE[2023-10-14 11:08:10.077][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676).
biodb.DEBUG[2023-10-14 11:08:10.690][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:08:10.693][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.content"
biodb.TRACE[2023-10-14 11:08:10.698][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.request"
biodb.TRACE[2023-10-14 11:08:10.702][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67676.xml"
biodb.DEBUG[2023-10-14 11:08:10.704][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:08:10.706][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:08:10.707][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:08:10.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:10.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:10.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:10.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:10.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:10.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:10.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:10.726][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:10.727][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:10.729][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.730][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:10.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:10.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.737][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:10.739][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:10.740][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.741][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.743][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:10.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:10.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.766][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:10.767][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:10.768][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.769][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.771][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:10.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:10.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.776][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:10.778][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:10.779][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.780][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:10.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:10.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.787][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:10.788][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:10.789][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.790][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.792][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:10.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:10.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.798][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:10.799][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:10.800][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.802][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.803][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:08:10.805][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:10.806][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.807][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.809][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:08:10.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:10.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.815][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:10.816][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:10.818][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.819][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:10.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:10.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.827][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:10.829][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:10.830][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.831][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.833][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:10.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:10.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.838][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:08:10.840][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:10.841][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.843][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.844][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:08:10.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:10.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.849][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:10.852][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:10.853][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.854][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.856][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:10.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:10.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:10.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:10.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:10.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:10.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:10.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:10.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:10.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:10.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:10.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:10.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:10.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:10.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:10.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:10.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:10.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:10.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:10.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:10.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:10.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:10.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:10.912][self$createEntryFromContent] Accession numbers: 67676.
biodb.TRACE[2023-10-14 11:08:10.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:10.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:10.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:10.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:10.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:10.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:10.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:10.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:10.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:10.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:10.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:10.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:10.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:10.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:10.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:10.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:10.942][private$loadEntries] Creating entries from ids [1]: "69690".
biodb.DEBUG[2023-10-14 11:08:10.943][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:08:10.945][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69690".
biodb.TRACE[2023-10-14 11:08:10.946][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:08:10.947][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:08:10.949][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:08:10.950][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:08:10.951][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:08:10.953][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:08:10.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:10.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:10.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:10.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:10.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:10.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:10.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:10.972][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.DEBUG[2023-10-14 11:08:10.975][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:08:10.976][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:08:10.978][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.TRACE[2023-10-14 11:08:11.618][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690).
biodb.DEBUG[2023-10-14 11:08:12.260][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:08:12.263][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.content"
biodb.TRACE[2023-10-14 11:08:12.267][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.request"
biodb.TRACE[2023-10-14 11:08:12.271][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69690.xml"
biodb.DEBUG[2023-10-14 11:08:12.273][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:08:12.275][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:08:12.276][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:08:12.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:12.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:12.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:12.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:12.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:12.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:12.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:12.296][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:12.297][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:12.298][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.299][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:12.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:12.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.306][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:12.308][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:12.309][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.310][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.311][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:12.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:12.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.317][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:12.318][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:12.319][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.320][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.322][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:12.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:12.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.327][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:12.329][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:12.330][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.331][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.333][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:12.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:12.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.338][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:12.339][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:12.340][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.342][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.343][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:12.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:12.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.361][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:12.363][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:12.364][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.366][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.368][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:08:12.369][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:12.370][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.372][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.373][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:08:12.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:12.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.378][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:12.379][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:12.381][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.382][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:12.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:12.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.389][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:12.390][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:12.391][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.392][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.394][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:12.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:12.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.399][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:08:12.400][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:12.402][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.403][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.404][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:08:12.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:12.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.409][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:12.411][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:12.412][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.413][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.414][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:12.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:12.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:12.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:12.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:12.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:12.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:12.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:12.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:12.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:12.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:12.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:12.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:12.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:12.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:12.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:12.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:12.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:12.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:12.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:12.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:12.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:12.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:12.470][self$createEntryFromContent] Accession numbers: 69690.
biodb.TRACE[2023-10-14 11:08:12.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:12.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:12.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:12.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:12.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:12.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:12.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:12.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:12.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:12.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:12.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:12.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:12.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:12.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:12.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:12.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:12.501][private$loadEntries] Creating entries from ids [1]: "69734".
biodb.DEBUG[2023-10-14 11:08:12.502][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:08:12.504][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69734".
biodb.TRACE[2023-10-14 11:08:12.506][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:08:12.507][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:08:12.508][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:08:12.509][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:08:12.511][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:08:12.512][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:08:12.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:12.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:12.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:12.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:12.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:12.527][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:12.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:12.530][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.DEBUG[2023-10-14 11:08:12.533][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:08:12.535][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:08:12.536][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.TRACE[2023-10-14 11:08:13.174][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734).
biodb.DEBUG[2023-10-14 11:08:13.823][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:08:13.826][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.content"
biodb.TRACE[2023-10-14 11:08:13.831][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.request"
biodb.TRACE[2023-10-14 11:08:13.834][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69734.xml"
biodb.DEBUG[2023-10-14 11:08:13.836][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:08:13.838][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:08:13.839][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:08:13.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:13.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:13.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:13.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:13.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:13.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:13.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:13.857][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:13.858][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:13.860][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:13.861][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:13.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:13.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:13.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:13.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:13.868][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:13.869][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:13.870][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:13.871][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:13.873][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:13.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:13.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:13.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:13.878][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:13.879][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:13.881][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:13.882][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:13.883][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:13.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:13.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:13.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:13.888][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:13.889][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:13.891][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:13.892][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:13.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:13.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:13.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:13.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:13.898][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:13.899][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:13.901][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:13.902][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:13.903][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:13.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:13.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:13.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:13.908][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:13.909][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:13.911][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:13.912][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:13.913][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:08:13.914][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:13.916][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:13.917][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:13.918][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:08:13.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:13.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:13.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:13.923][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:13.925][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:13.926][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:13.927][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:13.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:13.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:13.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:13.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:13.934][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:13.954][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:13.955][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:13.956][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:13.958][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:13.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:13.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:13.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:13.963][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:08:13.964][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:13.965][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:13.966][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:13.968][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:08:13.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:13.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:13.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:13.973][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:13.974][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:13.975][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:13.976][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:13.978][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:13.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:13.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:13.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:13.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:13.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:13.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:13.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:13.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:13.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:13.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:13.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:13.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:13.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:13.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:13.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:13.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:13.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:14.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:14.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:14.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:14.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:14.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:14.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:14.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:14.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:14.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:14.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:14.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:14.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:14.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:14.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:14.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:14.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:14.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:14.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:14.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:14.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:14.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:14.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:14.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:14.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:14.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:14.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:14.046][self$createEntryFromContent] Accession numbers: 69734.
biodb.TRACE[2023-10-14 11:08:14.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:14.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:14.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:14.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:14.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:14.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:14.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:14.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:14.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:14.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:14.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:14.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:14.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:14.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:14.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:14.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:14.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:14.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:14.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:14.079][private$loadEntries] Creating entries from ids [1]: "79978".
biodb.DEBUG[2023-10-14 11:08:14.080][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:08:14.083][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79978".
biodb.TRACE[2023-10-14 11:08:14.084][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:08:14.086][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:08:14.087][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:08:14.088][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:08:14.090][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:08:14.091][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:08:14.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:14.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:14.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:14.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:14.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:14.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:14.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:14.109][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.DEBUG[2023-10-14 11:08:14.112][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:08:14.114][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:08:14.116][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.TRACE[2023-10-14 11:08:14.763][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978).
biodb.DEBUG[2023-10-14 11:08:15.370][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:08:15.373][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.content"
biodb.TRACE[2023-10-14 11:08:15.378][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.request"
biodb.TRACE[2023-10-14 11:08:15.381][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79978.xml"
biodb.DEBUG[2023-10-14 11:08:15.383][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:08:15.385][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:08:15.386][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:08:15.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:15.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:15.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:15.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:15.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:15.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:15.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:15.404][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:15.405][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:15.406][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.408][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:15.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:15.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.414][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:15.415][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:15.417][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.418][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.419][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:15.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:15.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.424][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:15.426][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:15.427][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.428][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.430][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:15.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:15.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.435][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:15.436][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:15.437][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.439][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:15.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:15.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.446][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:15.447][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:15.448][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.450][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:15.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:15.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.457][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:15.458][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:15.459][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.460][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.462][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:15.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:15.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.468][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:08:15.469][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:15.470][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.472][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.473][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:08:15.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:15.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.479][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:15.480][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:15.481][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.483][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:15.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:15.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.489][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:15.491][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:15.492][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.493][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:15.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:15.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.500][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:08:15.501][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:15.503][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.504][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.505][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:08:15.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:15.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.510][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:15.529][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:15.531][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.532][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:15.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:15.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:15.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:15.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:15.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:15.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:15.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:15.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:15.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:15.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:15.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:15.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:15.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:15.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:15.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:15.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:15.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:15.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:15.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:15.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:15.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:15.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:15.592][self$createEntryFromContent] Accession numbers: 79978.
biodb.TRACE[2023-10-14 11:08:15.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:15.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:15.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:15.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:15.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:15.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:15.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:15.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:15.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:15.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:15.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:15.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:15.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:15.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:15.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:15.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:15.630][private$loadEntries] Creating entries from ids [1]: "88771".
biodb.DEBUG[2023-10-14 11:08:15.631][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-10-14 11:08:15.634][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88771".
biodb.TRACE[2023-10-14 11:08:15.635][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-10-14 11:08:15.637][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-10-14 11:08:15.638][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-10-14 11:08:15.639][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-10-14 11:08:15.641][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-10-14 11:08:15.642][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-10-14 11:08:15.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:15.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:15.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:15.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:15.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:15.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:15.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:15.659][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.DEBUG[2023-10-14 11:08:15.663][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-10-14 11:08:15.664][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-10-14 11:08:15.666][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.TRACE[2023-10-14 11:08:16.360][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771).
biodb.DEBUG[2023-10-14 11:08:17.154][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-10-14 11:08:17.169][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.content"
biodb.TRACE[2023-10-14 11:08:17.175][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.request"
biodb.TRACE[2023-10-14 11:08:17.179][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88771.xml"
biodb.DEBUG[2023-10-14 11:08:17.181][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-10-14 11:08:17.182][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-10-14 11:08:17.184][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-10-14 11:08:17.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:17.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:17.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:17.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:17.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:17.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:17.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:17.202][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:17.204][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:17.205][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.206][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:17.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:17.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.213][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:17.214][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:17.215][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.217][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.218][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:17.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:17.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.223][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:17.225][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:17.226][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.227][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.229][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:17.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:17.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.234][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:17.235][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:17.236][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.237][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:17.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:17.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.244][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:17.245][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:17.247][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.248][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:17.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:17.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.255][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:17.256][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:17.257][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.258][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.260][ef$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:08:17.261][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:17.262][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.264][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.265][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-10-14 11:08:17.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:17.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.270][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.272][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.273][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.274][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.281][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:17.282][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:17.283][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.284][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.286][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:17.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:17.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.291][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:08:17.292][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:17.294][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.295][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.296][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-10-14 11:08:17.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:17.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.301][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:17.303][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:17.304][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.305][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.307][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:17.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:17.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:17.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:17.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:17.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:17.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:17.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:17.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:17.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:17.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:17.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:17.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:17.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:17.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:17.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:17.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:17.380][self$createEntryFromContent] Accession numbers: 88771.
biodb.TRACE[2023-10-14 11:08:17.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:17.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:17.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:17.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:17.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:17.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:17.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:17.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:17.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:17.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:17.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:17.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:17.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:17.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:17.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:17.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:17.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:17.459][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:08:17.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:17.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:17.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:17.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:17.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:17.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:17.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:17.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.485][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:17.486][private$selectFields]
biodb.TRACE[2023-10-14 11:08:17.487][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:17.488][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:17.489][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:17.491][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.492][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.493][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.494][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.496][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.497][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.498][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.500][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.501][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:17.502][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:17.503][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.505][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.506][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.507][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.508][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:17.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.524][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2023-10-14 11:08:17.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:17.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:17.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:17.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:17.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:17.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:17.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:17.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.559][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:17.560][private$selectFields]
biodb.TRACE[2023-10-14 11:08:17.561][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:17.563][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:17.564][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:17.565][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.567][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.568][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.569][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.571][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.572][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.573][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.574][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.576][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:17.577][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:17.578][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.580][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.581][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.582][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.583][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:17.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.600][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2023-10-14 11:08:17.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:17.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:17.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:17.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:17.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:17.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:17.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:17.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.626][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:17.627][private$selectFields]
biodb.TRACE[2023-10-14 11:08:17.628][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:17.629][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:17.630][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:17.632][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.633][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.634][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.635][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.636][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.639][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.640][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.641][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:17.642][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:17.644][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.645][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.646][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.647][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.648][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:17.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.666][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2023-10-14 11:08:17.667][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:08:17.668][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:08:17.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:17.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:17.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:17.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:17.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:17.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:17.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:17.687][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:17.692][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:17.694][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2023-10-14 11:08:17.696][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:17.697][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2023-10-14 11:08:17.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:17.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:17.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:17.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:17.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:17.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:17.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:17.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:17.736][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:17.737][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:17.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:17.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:17.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:17.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:17.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:17.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:17.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:17.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:17.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:17.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:17.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:17.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:17.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:17.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:17.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:17.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:17.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:17.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:17.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:17.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:17.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:17.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:17.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:17.827][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:08:17.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:17.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:17.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:17.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:17.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:17.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:17.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:17.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.853][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:17.873][private$selectFields]
biodb.TRACE[2023-10-14 11:08:17.875][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:17.877][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:17.879][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:17.881][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.883][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.884][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.885][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.886][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.888][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.889][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.890][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.892][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:17.893][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:17.894][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.895][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.896][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.898][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.899][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:17.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.915][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2023-10-14 11:08:17.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:17.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:17.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:17.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:17.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:17.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:17.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:17.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.949][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:17.950][private$selectFields]
biodb.TRACE[2023-10-14 11:08:17.951][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:17.953][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:17.954][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:17.956][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.957][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.958][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.959][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.961][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.962][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.963][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.965][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.966][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:17.967][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:17.969][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.970][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.971][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.972][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.974][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:17.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:17.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:17.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:17.990][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2023-10-14 11:08:17.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:17.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:17.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:18.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:18.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:18.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:18.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:18.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.015][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:18.016][private$selectFields]
biodb.TRACE[2023-10-14 11:08:18.018][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:18.019][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:18.020][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:18.021][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.023][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.024][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.025][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.027][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.028][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.029][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.030][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.032][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:18.033][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:18.034][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.035][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.036][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.038][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.039][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:18.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.055][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2023-10-14 11:08:18.056][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:08:18.057][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:08:18.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:18.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:18.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:18.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:18.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:18.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:18.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:18.103][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:18.108][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:18.110][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2023-10-14 11:08:18.111][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:18.113][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2023-10-14 11:08:18.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:18.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:18.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:18.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:18.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:18.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:18.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:18.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:18.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:18.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:18.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:18.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:18.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:18.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:18.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:18.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:18.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:18.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:18.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:18.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:18.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:18.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:18.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:18.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:18.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:18.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:18.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:18.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:18.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:18.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:18.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:18.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:18.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:18.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:18.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:18.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:18.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:18.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:18.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:18.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:18.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:18.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:18.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:18.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:18.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:18.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:18.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:18.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:18.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:18.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:18.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:18.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:18.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:18.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:18.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:18.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:18.333][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:08:18.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:18.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:18.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:18.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:18.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:18.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:18.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:18.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.359][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:18.360][private$selectFields]
biodb.TRACE[2023-10-14 11:08:18.361][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:18.362][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:18.363][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:18.365][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.366][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.367][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.368][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.369][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.371][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.372][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.373][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.374][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:18.375][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:18.376][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.378][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.379][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.380][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.381][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:18.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.397][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2023-10-14 11:08:18.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:18.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:18.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:18.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:18.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:18.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:18.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:18.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.422][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:18.424][private$selectFields]
biodb.TRACE[2023-10-14 11:08:18.425][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:18.426][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:18.427][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:18.428][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.429][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.431][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.432][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.433][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.434][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.435][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.437][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.438][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:18.439][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:18.440][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.441][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.443][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.444][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.445][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:18.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.461][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2023-10-14 11:08:18.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:18.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:18.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:18.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:18.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:18.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:18.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:18.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.486][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:18.487][private$selectFields]
biodb.TRACE[2023-10-14 11:08:18.489][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:18.490][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:18.491][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:18.492][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.512][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.514][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.516][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.518][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.520][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.521][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.523][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.525][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:18.527][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:18.529][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.530][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.531][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.532][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.533][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:18.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.550][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2023-10-14 11:08:18.551][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:08:18.552][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:08:18.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:18.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:18.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:18.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:18.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:18.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:18.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:18.571][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:18.576][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:18.577][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365d4ea5e0e90826806fec708da6c9ab".
biodb.TRACE[2023-10-14 11:08:18.579][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:18.581][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content".
biodb.DEBUG[2023-10-14 11:08:18.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:18.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:18.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:18.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:18.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:18.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:18.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:18.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:18.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:18.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:18.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:18.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:18.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:18.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:18.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:18.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:18.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:18.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:18.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:18.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:18.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:18.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:18.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:18.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:18.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:18.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:18.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:18.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:18.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:18.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:18.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:18.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:18.719][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:08:18.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:18.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:18.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:18.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:18.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:18.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:18.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:18.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.745][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:18.746][private$selectFields]
biodb.TRACE[2023-10-14 11:08:18.747][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:18.748][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:18.749][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:18.751][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.752][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.753][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.754][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.757][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.758][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.759][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.760][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:18.762][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:18.763][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.764][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.765][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.766][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.768][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:18.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.783][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2023-10-14 11:08:18.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:18.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:18.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:18.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:18.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:18.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:18.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:18.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.808][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:18.809][private$selectFields]
biodb.TRACE[2023-10-14 11:08:18.810][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:18.811][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:18.812][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:18.813][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.814][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.815][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.817][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.818][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.819][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.820][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.821][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.822][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:18.823][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:18.825][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.826][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.827][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.828][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.829][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:18.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.845][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2023-10-14 11:08:18.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:18.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:18.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:18.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:18.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:18.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:18.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:18.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.869][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:18.871][private$selectFields]
biodb.TRACE[2023-10-14 11:08:18.872][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:18.873][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:18.874][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:18.875][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.876][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.878][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.879][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.880][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.881][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.882][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.883][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.884][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:18.886][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:18.887][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.888][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.889][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.890][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.891][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:18.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:18.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.907][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2023-10-14 11:08:18.908][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:08:18.910][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:08:18.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:18.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:18.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:18.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:18.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:18.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:18.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:18.928][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:18.932][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:18.934][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7b0416ab2d5cbf869f248000c039a8e8".
biodb.TRACE[2023-10-14 11:08:18.935][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:18.937][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content".
biodb.DEBUG[2023-10-14 11:08:18.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:18.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:18.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:18.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:18.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:18.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:18.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:18.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:18.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:18.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:18.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:18.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:18.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:18.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:18.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:18.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:18.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:18.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:18.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:19.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:19.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:19.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:19.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:19.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:19.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:19.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:19.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:19.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:19.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:19.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:19.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:19.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:19.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:19.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:19.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:19.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:19.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:19.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:19.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:19.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:19.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:19.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:19.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:19.095][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:08:19.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:19.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:19.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:19.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:19.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:19.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:19.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:19.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.124][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.125][private$selectFields]
biodb.TRACE[2023-10-14 11:08:19.126][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:19.127][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:19.128][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.130][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.131][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.132][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.133][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.135][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.136][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.137][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.138][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.139][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.141][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.142][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.143][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.144][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.146][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.147][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:19.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.167][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2023-10-14 11:08:19.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:19.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:19.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:19.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:19.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:19.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:19.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:19.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.194][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.195][private$selectFields]
biodb.TRACE[2023-10-14 11:08:19.196][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:19.215][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:19.218][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.219][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.221][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.222][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.223][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.224][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.226][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.227][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.228][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.230][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.231][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.232][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.233][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.235][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.236][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.237][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:19.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.253][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2023-10-14 11:08:19.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:19.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:19.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:19.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:19.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:19.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:19.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:19.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.281][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.282][private$selectFields]
biodb.TRACE[2023-10-14 11:08:19.283][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:19.285][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:19.286][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.288][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.289][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.290][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.292][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.293][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.295][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.296][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.297][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.299][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.300][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.301][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.303][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.304][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.305][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.306][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:19.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.323][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2023-10-14 11:08:19.325][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:08:19.326][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:08:19.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:19.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:19.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:19.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:19.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:19.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:19.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:19.375][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:19.380][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:19.381][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2023-10-14 11:08:19.383][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:19.385][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2023-10-14 11:08:19.389][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:19.393][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:19.403][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2023-10-14 11:08:19.404][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:19.406][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2023-10-14 11:08:19.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:19.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:19.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:19.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:19.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:19.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:19.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:19.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:19.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:19.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:19.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:19.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:19.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:19.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:19.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:19.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:19.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:19.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:19.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:19.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:19.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:19.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:19.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:19.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:19.496][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:08:19.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:19.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:19.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:19.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:19.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:19.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:19.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:19.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.522][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.523][private$selectFields]
biodb.TRACE[2023-10-14 11:08:19.524][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:19.525][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:19.526][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.528][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.530][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.531][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.533][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.534][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.535][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.536][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.537][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.539][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.540][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.541][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.542][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.543][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.545][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:19.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.561][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2023-10-14 11:08:19.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:19.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:19.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:19.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:19.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:19.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:19.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:19.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.586][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.587][private$selectFields]
biodb.TRACE[2023-10-14 11:08:19.588][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:19.589][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:19.590][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.591][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.593][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.594][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.595][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.596][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.598][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.599][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.600][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.601][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.602][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.603][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.605][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.606][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.607][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.608][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:19.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.625][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-10-14 11:08:19.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:19.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:19.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:19.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:19.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:19.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:19.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:19.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.651][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.652][private$selectFields]
biodb.TRACE[2023-10-14 11:08:19.653][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:19.654][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:19.655][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.657][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.658][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.659][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.660][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.661][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.663][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.664][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.665][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.666][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.667][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.669][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.670][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.671][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.672][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.673][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:19.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.689][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2023-10-14 11:08:19.691][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:08:19.692][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:08:19.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:19.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:19.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:19.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:19.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:19.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:19.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:19.711][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:19.716][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:19.718][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2023-10-14 11:08:19.719][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:19.721][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2023-10-14 11:08:19.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:19.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:19.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:19.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:19.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:19.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:19.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:19.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:19.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:19.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:19.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:19.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:19.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:19.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:19.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:19.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:19.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:19.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:19.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:19.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:19.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:19.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:19.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:19.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:19.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:19.818][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:08:19.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:19.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:19.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:19.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:19.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:19.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:19.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:19.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.843][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.844][private$selectFields]
biodb.TRACE[2023-10-14 11:08:19.845][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:19.847][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:19.848][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.849][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.850][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.851][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.852][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.853][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.855][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.856][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.857][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.858][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.859][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.861][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.862][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.863][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.865][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.866][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:19.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.899][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2023-10-14 11:08:19.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:19.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:19.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:19.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:19.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:19.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:19.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:19.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.923][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.924][private$selectFields]
biodb.TRACE[2023-10-14 11:08:19.926][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:19.927][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:19.928][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.929][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.930][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.931][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.932][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.933][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.935][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.936][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.937][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.938][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.939][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.940][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.941][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.943][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.944][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.945][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:19.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.961][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2023-10-14 11:08:19.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:19.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:19.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:19.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:19.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:19.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:19.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:19.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.987][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.988][private$selectFields]
biodb.TRACE[2023-10-14 11:08:19.990][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:19.991][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:19.992][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:19.994][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.995][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:19.996][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:19.998][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:19.999][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.000][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.001][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.002][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.004][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:20.005][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:20.006][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.007][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.008][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.009][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.011][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:20.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.026][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2023-10-14 11:08:20.027][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:08:20.029][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:08:20.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:20.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:20.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:20.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:20.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:20.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:20.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:20.046][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:20.051][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:20.052][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2023-10-14 11:08:20.054][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:20.055][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2023-10-14 11:08:20.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:20.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:20.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:20.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:20.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:20.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:20.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:20.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:20.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:20.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:20.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:20.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:20.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:20.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:20.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:20.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:20.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:20.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:20.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:20.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:20.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:20.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:20.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:20.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:20.153][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:08:20.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:20.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:20.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:20.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:20.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:20.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:20.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:20.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.177][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:20.178][private$selectFields]
biodb.TRACE[2023-10-14 11:08:20.179][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:20.181][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:20.182][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:20.183][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.184][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.185][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.186][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.189][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.190][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.191][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.192][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:20.193][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:20.194][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.195][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.196][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.198][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.199][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:20.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.214][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2023-10-14 11:08:20.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:20.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:20.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:20.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:20.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:20.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:20.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:20.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.238][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:20.239][private$selectFields]
biodb.TRACE[2023-10-14 11:08:20.240][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:20.241][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:20.242][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:20.243][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.244][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.246][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.247][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.248][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.250][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.251][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.253][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:20.254][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:20.255][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.256][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.257][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.258][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.259][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:20.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.275][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2023-10-14 11:08:20.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:20.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:20.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:20.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:20.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:20.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:20.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:20.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.299][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:20.300][private$selectFields]
biodb.TRACE[2023-10-14 11:08:20.301][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:20.302][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:20.304][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:20.305][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.306][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.307][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.308][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.309][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.311][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.312][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.313][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.314][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:20.315][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:20.316][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.318][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.320][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.321][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:20.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.336][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2023-10-14 11:08:20.337][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:08:20.338][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:08:20.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:20.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:20.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:20.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:20.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:20.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:20.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:20.383][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:20.387][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:20.388][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26eec570aadd234892b573eb0777bd78".
biodb.TRACE[2023-10-14 11:08:20.390][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:20.392][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content".
biodb.DEBUG[2023-10-14 11:08:20.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:20.396][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:20.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:20.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:20.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:20.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:20.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:20.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:20.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:20.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:20.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:20.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:20.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:20.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:20.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:20.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:20.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:20.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:20.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:20.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:20.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:20.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:20.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:20.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:20.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:20.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:20.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:20.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:20.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:20.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:20.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:20.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:20.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:20.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:20.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:20.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:20.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:20.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:20.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:20.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:20.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:20.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:20.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:20.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:20.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:20.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:20.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:20.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.572][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:20.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:20.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:20.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:20.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:20.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:20.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:20.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:20.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:20.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:20.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:20.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:20.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:20.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:20.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:20.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:20.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:20.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:20.651][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:08:20.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:20.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:20.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:20.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:20.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:20.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:20.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:20.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.677][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:20.679][private$selectFields]
biodb.TRACE[2023-10-14 11:08:20.680][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:20.684][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:20.685][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:20.686][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.688][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.689][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.691][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.693][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.695][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.697][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.699][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.700][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:20.701][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:20.702][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.704][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.705][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.706][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.707][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:20.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.728][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2023-10-14 11:08:20.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:20.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:20.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:20.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:20.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:20.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:20.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:20.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.756][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:20.757][private$selectFields]
biodb.TRACE[2023-10-14 11:08:20.759][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:20.760][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:20.761][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:20.762][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.764][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.765][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.766][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.767][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.769][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.770][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.771][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.772][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:20.773][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:20.775][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.776][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.777][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.779][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.781][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:20.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:20.799][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-10-14 11:08:20.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:20.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:20.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:20.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:20.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:20.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:20.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:20.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:20.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:20.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:21.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:21.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.005][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:21.006][private$selectFields]
biodb.TRACE[2023-10-14 11:08:21.007][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:21.008][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:21.009][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:21.010][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:21.012][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:21.013][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.014][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.016][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:21.017][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:21.018][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.019][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.020][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:21.021][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:21.023][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:21.024][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:21.025][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.026][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.027][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:21.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:21.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:21.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:21.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:21.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:21.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:21.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.043][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2023-10-14 11:08:21.044][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:08:21.045][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:08:21.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.057][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:21.064][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:21.068][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:21.070][cch$loadFileContent] Trying to load 1 files from cache: [1]: "20c224089a82bbffabd2e7dbc67cfae3".
biodb.TRACE[2023-10-14 11:08:21.072][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:21.074][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content".
biodb.DEBUG[2023-10-14 11:08:21.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.445][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.896][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:21.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:21.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:21.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:21.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:21.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:21.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:21.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:21.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:21.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:21.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:21.998][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:08:22.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:22.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:22.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:22.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:22.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:22.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:22.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:22.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.024][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:22.026][private$selectFields]
biodb.TRACE[2023-10-14 11:08:22.027][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:22.028][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:22.029][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:22.030][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.032][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.033][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.034][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.035][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.036][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.038][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.039][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.040][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:22.041][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:22.042][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.044][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.045][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.046][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.047][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:22.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.063][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2023-10-14 11:08:22.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:22.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:22.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:22.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:22.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:22.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:22.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:22.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.105][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:22.107][private$selectFields]
biodb.TRACE[2023-10-14 11:08:22.108][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:22.109][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:22.110][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:22.111][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.112][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.113][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.115][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.116][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.117][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.118][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.119][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.120][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:22.121][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:22.123][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.124][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.125][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.126][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.127][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:22.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.147][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2023-10-14 11:08:22.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:22.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:22.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:22.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:22.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:22.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:22.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:22.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.173][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:22.174][private$selectFields]
biodb.TRACE[2023-10-14 11:08:22.175][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:22.178][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:22.179][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:22.181][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.182][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.183][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.185][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.189][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.190][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.191][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.193][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:22.194][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:22.195][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.196][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.197][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.199][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.200][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:22.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.216][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2023-10-14 11:08:22.217][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:08:22.218][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:08:22.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:22.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:22.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:22.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:22.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:22.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:22.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:22.236][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:22.241][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:22.242][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2023-10-14 11:08:22.244][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:22.246][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2023-10-14 11:08:22.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:22.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:22.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:22.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:22.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:22.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:22.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:22.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:22.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:22.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:22.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:22.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:22.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:22.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:22.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:22.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:22.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:22.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:22.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:22.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:22.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:22.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:22.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:22.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:22.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:22.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:22.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:22.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:22.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:22.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:22.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:22.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:22.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:22.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:22.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:22.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:22.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:22.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:22.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:22.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:22.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:22.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:22.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:22.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:22.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:22.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:22.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:22.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:22.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:22.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:22.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:22.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:22.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:22.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:22.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:22.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:22.370][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:08:22.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:22.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:22.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:22.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:22.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:22.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:22.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:22.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.396][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:22.397][private$selectFields]
biodb.TRACE[2023-10-14 11:08:22.398][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:22.399][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:22.400][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:22.401][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.403][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.404][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.405][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.406][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.407][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.408][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.410][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.411][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:22.412][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:22.413][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.414][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.416][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.417][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.418][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:22.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.434][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2023-10-14 11:08:22.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:22.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:22.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:22.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:22.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:22.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:22.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:22.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.460][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:22.461][private$selectFields]
biodb.TRACE[2023-10-14 11:08:22.463][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:22.464][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:22.465][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:22.466][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.467][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.469][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.470][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.471][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.472][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.473][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.474][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.476][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:22.477][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:22.478][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.479][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.480][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.481][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.483][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:22.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.503][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2023-10-14 11:08:22.505][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:22.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:22.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:22.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:22.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:22.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:22.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:22.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.530][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:22.531][private$selectFields]
biodb.TRACE[2023-10-14 11:08:22.532][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:22.533][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:22.534][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:22.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.538][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.539][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.540][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.541][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.542][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.543][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.544][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:22.546][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-10-14 11:08:22.547][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.548][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.549][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.550][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.551][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-10-14 11:08:22.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.568][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2023-10-14 11:08:22.569][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:08:22.570][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-10-14 11:08:22.597][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-10-14 11:08:22.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-10-14 11:08:22.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.602][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-10-14 11:08:22.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-10-14 11:08:22.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.607][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-10-14 11:08:22.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-10-14 11:08:22.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-10-14 11:08:22.616][biodb::testThat]
biodb.INFO [2023-10-14 11:08:22.618][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2023-10-14 11:08:22.619][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-10-14 11:08:22.620][biodb::testThat]
biodb.TRACE[2023-10-14 11:08:22.624][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-10-14 11:08:22.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-10-14 11:08:22.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.629][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-10-14 11:08:22.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-10-14 11:08:22.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.633][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-10-14 11:08:22.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-10-14 11:08:22.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:22.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:22.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:22.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:22.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:22.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:22.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:22.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:22.714][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:22.718][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:22.720][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2023-10-14 11:08:22.722][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:22.741][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2023-10-14 11:08:22.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:22.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:22.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:22.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:22.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:22.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:22.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:22.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:22.772][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:22.776][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:22.778][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2023-10-14 11:08:22.780][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:22.781][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2023-10-14 11:08:22.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:22.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:22.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:22.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:22.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:22.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:22.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:22.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:22.815][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:22.819][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:22.821][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2023-10-14 11:08:22.822][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:22.825][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2023-10-14 11:08:22.828][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:08:22.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:22.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:22.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:22.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:22.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:22.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:22.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:22.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:22.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:22.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:22.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:22.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.853][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:22.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:22.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.857][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:22.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:22.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.871][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:22.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:22.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.880][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:22.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:22.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.885][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:22.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:22.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:22.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:22.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:22.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:22.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:22.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:22.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.903][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:22.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:22.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.908][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:22.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:22.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:22.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:22.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:22.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:22.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.931][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:22.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:22.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.935][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:22.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:22.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.940][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:22.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:22.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.944][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:22.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:22.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:22.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:22.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.953][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:22.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:22.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.958][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:22.959][private$selectFields]
biodb.TRACE[2023-10-14 11:08:22.960][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:22.961][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:22.962][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:22.963][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:22.964][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:22.965][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.966][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.967][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:22.969][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:22.970][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.971][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.972][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.973][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:22.974][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.975][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.976][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:22.978][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:22.979][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.980][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.981][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:22.982][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:22.983][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.984][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.986][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:22.987][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:22.988][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.989][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.990][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:22.991][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:22.992][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.993][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.995][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.996][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:22.997][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:22.998][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:22.999][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:23.000][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:23.001][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.002][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.004][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:23.005][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:23.006][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.007][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.008][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:23.009][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:23.010][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.011][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.013][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:23.014][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:23.015][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.016][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.017][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:23.018][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:23.019][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.021][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.022][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:23.023][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:23.024][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.025][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.026][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:23.027][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:23.028][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.030][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.031][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:23.032][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:23.033][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.034][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.035][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:23.036][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:23.038][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.039][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.040][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:23.041][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:23.042][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.043][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.044][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:23.045][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:23.047][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.048][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.049][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.050][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.051][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.052][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.053][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:23.054][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:23.056][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.057][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.058][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:23.059][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:23.060][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.061][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.062][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:23.064][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:23.065][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.066][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.067][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:23.068][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:23.069][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.070][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.071][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:23.073][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:23.074][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:23.075][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:23.076][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.077][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.078][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:23.080][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:23.081][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.082][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.083][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:23.084][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:23.085][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.086][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.087][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:23.089][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:23.090][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.091][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.092][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:23.093][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:23.094][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.095][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.097][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:23.098][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:23.099][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.100][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.101][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.102][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.104][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.105][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.106][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:23.107][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:23.108][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.109][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.110][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:23.112][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:23.113][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.114][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.115][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:23.116][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:23.117][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.118][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.119][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:23.121][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:23.122][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.123][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.124][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:23.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:23.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:23.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:23.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:23.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:23.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:23.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.139][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:23.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:23.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.144][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:23.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:23.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.149][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:23.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:23.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:23.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:23.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:23.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:23.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:23.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:23.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.168][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:23.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:23.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.173][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:23.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:23.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.177][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:23.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:23.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:23.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:23.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.187][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:23.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:23.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:23.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:23.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:23.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:23.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:23.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:23.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:23.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:23.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:23.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:23.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:23.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:23.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:23.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:23.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.244][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:23.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:23.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.249][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:23.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:23.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.253][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:23.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:23.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.258][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:23.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:23.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.263][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:23.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:23.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.267][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:23.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:23.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.272][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:23.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:23.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.276][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:23.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:23.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.281][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:23.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:23.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.294][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2023-10-14 11:08:23.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:23.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:23.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:23.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:23.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:23.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:23.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:23.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:23.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:23.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:23.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:23.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.318][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:23.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:23.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.322][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:23.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:23.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:23.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:23.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:23.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:23.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.336][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:23.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:23.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.340][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:23.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:23.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:23.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:23.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:23.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:23.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:23.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:23.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:23.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:23.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.363][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:23.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:23.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.368][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:23.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:23.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:23.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:23.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:23.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:23.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.391][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:23.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:23.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.396][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:23.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:23.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.400][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:23.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:23.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.405][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:23.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:23.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.409][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:23.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:23.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.414][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:23.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:23.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.438][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:23.440][private$selectFields]
biodb.TRACE[2023-10-14 11:08:23.441][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:23.442][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:23.444][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:23.445][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:23.446][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:23.447][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.448][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.450][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:23.451][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:23.452][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.453][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.454][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:23.456][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:23.457][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.459][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.460][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:23.462][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:23.463][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.464][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.465][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:23.467][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:23.469][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.470][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.471][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:23.473][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:23.474][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.475][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.476][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:23.478][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:23.479][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.481][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.482][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.483][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.485][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.486][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.487][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:23.489][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:23.490][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.491][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.492][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:23.493][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:23.495][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.496][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.498][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:23.499][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:23.500][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.501][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.502][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:23.504][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:23.505][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.506][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.507][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:23.509][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:23.510][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.511][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.512][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:23.513][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:23.514][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.516][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.517][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:23.519][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:23.520][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.521][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.522][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:23.523][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:23.524][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.525][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.528][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:23.530][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:23.531][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.532][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.533][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:23.535][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:23.537][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.538][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.540][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:23.541][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:23.542][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.543][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.545][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.546][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.547][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.548][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.550][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:23.551][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:23.552][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.553][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.555][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:23.556][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:23.557][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.558][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.560][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:23.561][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:23.562][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.563][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.565][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:23.566][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:23.567][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.568][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.570][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:23.571][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:23.572][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:23.574][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:23.575][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.577][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.578][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:23.579][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:23.580][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.582][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.583][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:23.584][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:23.585][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.587][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.588][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:23.589][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:23.590][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.596][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.598][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:23.599][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:23.600][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.601][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.603][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:23.604][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:23.605][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.606][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.607][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:23.609][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:23.610][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.611][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.612][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.614][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.615][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.616][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.617][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:23.619][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:23.620][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.621][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.622][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:23.624][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:23.625][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.626][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.628][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:23.629][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:23.630][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.631][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.633][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:23.634][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:23.635][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.636][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.637][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:23.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:23.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:23.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:23.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:23.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:23.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:23.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.657][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:23.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:23.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.662][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:23.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:23.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.667][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:23.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:23.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:23.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:23.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:23.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:23.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:23.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:23.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.687][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:23.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:23.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.692][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:23.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:23.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.696][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:23.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:23.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:23.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:23.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:23.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:23.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:23.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:23.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.715][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:23.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:23.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.720][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:23.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:23.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.725][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:23.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:23.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.730][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:23.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:23.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.734][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:23.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:23.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.739][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:23.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:23.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:23.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:23.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:23.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:23.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:23.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:23.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.777][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:23.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:23.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.784][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:23.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:23.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.791][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:23.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:23.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.800][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:23.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:23.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.810][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:23.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:23.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.822][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:23.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:23.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.831][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:23.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:23.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.841][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:23.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:23.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.852][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:23.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:23.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.877][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2023-10-14 11:08:23.879][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:08:23.881][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:08:23.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:23.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:23.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:23.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:23.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:23.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:23.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:23.918][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:23.925][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:23.928][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2023-10-14 11:08:23.931][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:23.934][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2023-10-14 11:08:23.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:23.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:23.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:23.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:23.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:23.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:23.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:23.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:23.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:23.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:23.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:24.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:24.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:24.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:24.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:24.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:24.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:24.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:24.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:24.081][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:24.088][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:24.091][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2023-10-14 11:08:24.094][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:24.097][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2023-10-14 11:08:24.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:24.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:24.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:24.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:24.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:24.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:24.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:24.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:24.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:24.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:24.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:24.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:24.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:24.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:24.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:24.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:24.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:24.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:24.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:24.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:24.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:24.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:24.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:24.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:24.280][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:08:24.282][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:24.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:24.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:24.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:24.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:24.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:24.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:24.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:24.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:24.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:24.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:24.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.308][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:24.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:24.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.312][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:24.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:24.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:24.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:24.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:24.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:24.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.330][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:24.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:24.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.336][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:24.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:24.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:24.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:24.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:24.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:24.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:24.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:24.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:24.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:24.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.363][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:24.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:24.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.369][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:24.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:24.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:24.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:24.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:24.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:24.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.397][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:24.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:24.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.403][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:24.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:24.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.409][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:24.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:24.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.415][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:24.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:24.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.422][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:24.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:24.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.427][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:24.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:24.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.432][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:24.433][private$selectFields]
biodb.TRACE[2023-10-14 11:08:24.434][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:24.435][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:24.436][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:24.438][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:24.439][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:24.440][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.441][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.443][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:24.444][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:24.445][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.447][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.448][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:24.449][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:24.451][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.452][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.454][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:24.457][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:24.458][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.460][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.462][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:24.464][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:24.466][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.468][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.470][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:24.473][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:24.475][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.477][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.479][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:24.482][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:24.484][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.485][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.487][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.488][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.489][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.491][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.492][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:24.493][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:24.494][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.496][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.497][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:24.498][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:24.500][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.501][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.502][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:24.503][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:24.504][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.505][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.507][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:24.508][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:24.509][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.510][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.512][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:24.513][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:24.514][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.516][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.517][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:24.518][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:24.519][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.520][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.522][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:24.523][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:24.524][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.525][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.526][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:24.528][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:24.529][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.530][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.531][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:24.533][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:24.534][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.535][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.536][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:24.537][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:24.538][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.540][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.541][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:24.542][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:24.543][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.544][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.545][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.547][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.548][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.549][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.550][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:24.551][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:24.553][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.554][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.555][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:24.556][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:24.557][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.558][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.560][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:24.561][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:24.562][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.563][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.564][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:24.565][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:24.567][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.568][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.569][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:24.570][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:24.571][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:24.573][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:24.574][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.575][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.576][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:24.577][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:24.578][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.579][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.581][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:24.582][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:24.583][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.584][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.585][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:24.586][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:24.587][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.589][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.590][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:24.591][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:24.592][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.593][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.594][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:24.595][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:24.596][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.598][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.599][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:24.600][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:24.601][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.606][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.607][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.609][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.610][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.611][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.612][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:24.613][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:24.614][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.615][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.616][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:24.618][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:24.619][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.620][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.621][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:24.622][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:24.623][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.624][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.625][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:24.627][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:24.628][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.629][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.630][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:24.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:24.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:24.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:24.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:24.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:24.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:24.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.645][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:24.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:24.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.650][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:24.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:24.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.654][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:24.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:24.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:24.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:24.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:24.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:24.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:24.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:24.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.673][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:24.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:24.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.678][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:24.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:24.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.682][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:24.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:24.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:24.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:24.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.692][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:24.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:24.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:24.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:24.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:24.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:24.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:24.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:24.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:24.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:24.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.716][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:24.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:24.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.721][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:24.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:24.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.726][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:24.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:24.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:24.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:24.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:24.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:24.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:24.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:24.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.761][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:24.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:24.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.766][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:24.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:24.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.770][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:24.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:24.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.775][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:24.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:24.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.781][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:24.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:24.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.786][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:24.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:24.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.791][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:24.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:24.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.796][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:24.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:24.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.801][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:24.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:24.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.814][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2023-10-14 11:08:24.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:24.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:24.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:24.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:24.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:24.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:24.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:24.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:24.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:24.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:24.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:24.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.841][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:24.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:24.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.845][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:24.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:24.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:24.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:24.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:24.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:24.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.861][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:24.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:24.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.866][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:24.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:24.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:24.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:24.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:24.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:24.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:24.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:24.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:24.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:24.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.892][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:24.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:24.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.897][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:24.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:24.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:24.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:24.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:24.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:24.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:24.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.921][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:24.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:24.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.926][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:24.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:24.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.931][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:24.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:24.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.935][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:24.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:24.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.940][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:24.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:24.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.964][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:24.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:24.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.971][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:24.972][private$selectFields]
biodb.TRACE[2023-10-14 11:08:24.973][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:24.974][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:24.975][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:24.976][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:24.978][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:24.979][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.984][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.985][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:24.987][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:24.988][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.989][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.990][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:24.991][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:24.992][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.993][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.994][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:24.996][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:24.997][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:24.998][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:24.999][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:25.000][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:25.001][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.002][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.004][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:25.005][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:25.006][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.007][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.008][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:25.009][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:25.010][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.012][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.013][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:25.014][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:25.015][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.016][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.018][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:25.019][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:25.020][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.021][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.022][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:25.024][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:25.025][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.026][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.027][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:25.028][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:25.029][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.031][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.033][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:25.034][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:25.035][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.037][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.038][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:25.039][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:25.040][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.042][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.044][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:25.045][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:25.046][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.047][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.048][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:25.050][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:25.051][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.052][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.053][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:25.055][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:25.057][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.058][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.059][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:25.061][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:25.062][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.063][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.064][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:25.066][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:25.067][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.068][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.069][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:25.071][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:25.072][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.073][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.074][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:25.075][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:25.077][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.078][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.079][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:25.080][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:25.081][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.083][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.084][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:25.085][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:25.086][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.087][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.089][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:25.090][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:25.091][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.092][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.093][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:25.095][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:25.096][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.097][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.098][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:25.099][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:25.100][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:25.102][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:25.103][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.104][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.105][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:25.106][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:25.108][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.109][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.110][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:25.112][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:25.113][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.114][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.115][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:25.117][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:25.118][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.119][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.121][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:25.122][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:25.123][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.124][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.125][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:25.127][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:25.128][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.129][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.130][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:25.131][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:25.132][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.134][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.135][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:25.136][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:25.137][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.138][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.140][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:25.141][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:25.142][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.143][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.144][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:25.146][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:25.147][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.148][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.150][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:25.151][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:25.152][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.153][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.154][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:25.156][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:25.157][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.158][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.159][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:25.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:25.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:25.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:25.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:25.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:25.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:25.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.175][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:25.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:25.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.180][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:25.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:25.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.185][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:25.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:25.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:25.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:25.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:25.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:25.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:25.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:25.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:25.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:25.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.209][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:25.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:25.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.214][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:25.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:25.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:25.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:25.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:25.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:25.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:25.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:25.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:25.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:25.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:25.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:25.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.250][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:25.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:25.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.256][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:25.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:25.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.261][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:25.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:25.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.268][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:25.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:25.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:25.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:25.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:25.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:25.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:25.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:25.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:25.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:25.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:25.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:25.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:25.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:25.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.305][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:25.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:25.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.309][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:25.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:25.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.314][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:25.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:25.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.320][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:25.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:25.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.326][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:25.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:25.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.331][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:25.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:25.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.337][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:25.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:25.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.342][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:25.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:25.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.348][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:25.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:25.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.365][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2023-10-14 11:08:25.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:25.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:25.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:25.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:25.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:25.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:25.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:25.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:25.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:25.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:25.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:25.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.390][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:25.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:25.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.395][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:25.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:25.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:25.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:25.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:25.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:25.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:25.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:25.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.419][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:25.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:25.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:25.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:25.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:25.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:25.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.436][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:25.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:25.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:25.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:25.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.447][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:25.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:25.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.454][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:25.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:25.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:25.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:25.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:25.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:25.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:25.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:25.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:25.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:25.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.487][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:25.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:25.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.492][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:25.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:25.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.497][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:25.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:25.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:25.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:25.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:25.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:25.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.512][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:25.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:25.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.517][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:25.518][private$selectFields]
biodb.TRACE[2023-10-14 11:08:25.519][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:25.520][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:25.522][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:25.523][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:25.524][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:25.525][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.526][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.528][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:25.529][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:25.530][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.531][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.533][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:25.534][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:25.536][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.537][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.539][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:25.540][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:25.542][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.543][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.544][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:25.545][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:25.547][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.548][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.549][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:25.550][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:25.551][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.553][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.554][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:25.555][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:25.556][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.557][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.559][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:25.560][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:25.561][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.562][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.564][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:25.565][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:25.566][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.567][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.569][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:25.570][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:25.571][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.573][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.574][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:25.575][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:25.576][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.577][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.579][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:25.580][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:25.581][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.583][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.584][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:25.585][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:25.586][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.588][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.589][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:25.590][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:25.592][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.593][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.594][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:25.595][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:25.596][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.598][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.599][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:25.600][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:25.601][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.602][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.604][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:25.605][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:25.606][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.607][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.608][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:25.610][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:25.611][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.612][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.613][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:25.615][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:25.634][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.637][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.639][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:25.640][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:25.642][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.644][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.647][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:25.650][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:25.652][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.654][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.655][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:25.657][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:25.658][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.659][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.660][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:25.662][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:25.663][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.664][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.666][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:25.667][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:25.669][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.671][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.673][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:25.674][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:25.676][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:25.677][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:25.678][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.679][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.680][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:25.682][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:25.683][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.684][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.685][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:25.687][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:25.688][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.689][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.690][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:25.691][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:25.693][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.694][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.695][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:25.696][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:25.698][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.699][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.730][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:25.732][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:25.733][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.734][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.735][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:25.737][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:25.738][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.739][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.740][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:25.741][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:25.742][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.744][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.750][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:25.752][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:25.754][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.756][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.758][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:25.760][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:25.762][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.763][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.764][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:25.766][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:25.767][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.769][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.770][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:25.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:25.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:25.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:25.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:25.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:25.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:25.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.788][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:25.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:25.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.796][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:25.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:25.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.803][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:25.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:25.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:25.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:25.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:25.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:25.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:25.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:25.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.833][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:25.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:25.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.840][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:25.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:25.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.847][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:25.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:25.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:25.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:25.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:25.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:25.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:25.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:25.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.874][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:25.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:25.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.880][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:25.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:25.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:25.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:25.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:25.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:25.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:25.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:25.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:25.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:25.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:25.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:25.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:25.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:25.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:25.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:25.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.926][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:25.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:25.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.933][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:25.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:25.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.939][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:25.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:25.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.944][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:25.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:25.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.950][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:25.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:25.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:25.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:25.995][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:25.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:25.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.001][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:26.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:26.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.050][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:26.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:26.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.054][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:26.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:26.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.066][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2023-10-14 11:08:26.114][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:08:26.116][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:08:26.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:26.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:26.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:26.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:26.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:26.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:26.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:26.142][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:26.146][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:26.151][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2023-10-14 11:08:26.153][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:26.155][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2023-10-14 11:08:26.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:26.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:26.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:26.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:26.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:26.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:26.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:26.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:26.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:26.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:26.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:26.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:26.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:26.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:26.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:26.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:26.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:26.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:26.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:26.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:26.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:26.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:26.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:26.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:26.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:26.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:26.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:26.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:26.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:26.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:26.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:26.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:26.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:26.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:26.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:26.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:26.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:26.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:26.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:26.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:26.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:26.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:26.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:26.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:26.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:26.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:26.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:26.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:26.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:26.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:26.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:26.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:26.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:26.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:26.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:26.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:26.381][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:26.384][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:26.386][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2023-10-14 11:08:26.387][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:26.389][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2023-10-14 11:08:26.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:26.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:26.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:26.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:26.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:26.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:26.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:26.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:26.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:26.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:26.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:26.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:26.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:26.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:26.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:26.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:26.450][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:26.454][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:26.456][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dd9d19fb78fcc7453eff2e9dd7ba5702".
biodb.TRACE[2023-10-14 11:08:26.458][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:26.460][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content".
biodb.DEBUG[2023-10-14 11:08:26.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:26.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:26.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:26.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:26.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:26.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:26.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:26.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:26.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:26.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:26.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:26.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:26.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:26.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:26.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:26.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:26.523][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:08:26.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:26.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:26.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:26.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:26.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:26.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:26.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:26.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:26.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:26.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:26.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:26.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.548][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:26.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:26.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.553][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:26.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:26.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:26.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:26.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:26.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:26.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.567][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:26.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:26.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.572][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:26.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:26.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:26.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:26.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:26.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:26.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:26.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:26.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:26.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:26.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.596][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:26.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:26.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.600][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:26.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:26.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:26.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:26.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:26.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:26.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.625][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:26.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:26.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.629][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:26.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:26.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.634][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:26.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:26.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.639][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:26.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:26.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.643][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:26.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:26.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.648][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:26.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:26.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.653][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:26.654][private$selectFields]
biodb.TRACE[2023-10-14 11:08:26.656][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:26.657][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:26.658][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:26.659][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:26.661][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:26.662][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.663][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.664][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:26.665][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:26.667][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.668][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.669][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:26.670][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:26.671][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.673][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.674][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:26.675][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:26.676][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.677][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.679][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:26.680][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:26.681][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.682][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.684][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:26.685][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:26.686][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.687][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.689][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:26.690][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:26.691][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.692][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.693][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.695][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.696][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.697][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.698][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:26.699][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:26.700][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.702][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.703][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:26.704][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:26.705][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.706][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.707][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:26.709][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:26.730][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.731][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.733][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:26.734][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:26.735][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.736][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.737][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:26.739][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:26.740][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.741][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.742][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:26.743][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:26.744][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.746][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.747][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:26.748][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:26.749][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.750][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.751][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:26.753][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:26.754][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.755][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.756][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:26.757][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:26.758][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.759][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.761][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:26.762][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:26.763][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.764][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.765][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:26.766][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:26.767][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.768][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.770][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.771][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.772][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.773][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.774][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:26.775][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:26.776][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.777][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.779][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:26.780][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:26.781][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.782][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.783][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:26.784][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:26.785][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.787][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.788][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:26.789][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:26.790][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.792][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.793][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:26.794][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:26.795][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:26.798][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:26.800][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.801][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.802][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:26.803][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:26.804][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.805][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.811][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:26.812][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:26.813][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.814][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.815][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:26.817][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:26.818][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.819][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.820][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:26.821][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:26.823][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.832][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.833][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:26.835][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:26.836][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.837][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.843][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:26.844][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:26.845][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.846][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.847][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.849][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.850][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.851][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.852][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:26.853][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:26.855][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.856][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.857][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:26.858][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:26.860][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.861][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.862][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:26.863][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:26.865][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.866][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.867][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:26.868][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:26.870][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.871][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.872][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:26.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:26.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:26.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:26.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:26.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:26.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:26.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.890][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:26.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:26.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.896][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:26.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:26.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.901][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:26.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:26.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:26.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:26.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:26.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:26.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:26.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:26.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.922][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:26.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:26.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.928][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:26.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:26.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.933][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:26.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:26.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:26.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:26.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:26.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:26.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.949][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:26.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:26.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:26.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:26.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.961][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:26.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:26.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:26.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:26.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.971][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:26.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:26.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.976][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:26.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:26.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.981][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:26.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:26.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:26.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:26.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:26.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:27.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.019][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.024][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.029][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.034][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:27.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:27.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.039][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:27.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:27.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.043][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:27.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:27.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.048][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:27.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:27.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.053][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:27.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:27.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.058][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:27.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:27.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.070][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2023-10-14 11:08:27.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:27.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:27.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:27.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:27.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:27.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:27.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:27.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:27.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:27.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:27.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:27.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.096][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:27.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:27.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.101][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:27.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:27.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.121][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:27.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:27.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.126][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:27.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:27.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:27.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:27.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:27.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:27.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:27.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:27.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:27.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:27.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.151][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:27.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:27.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.156][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:27.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:27.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:27.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:27.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:27.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:27.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.178][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.183][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.188][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:27.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:27.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.192][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:27.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:27.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.197][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:27.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:27.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.202][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:27.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:27.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.206][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:27.207][private$selectFields]
biodb.TRACE[2023-10-14 11:08:27.209][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:27.210][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:27.211][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:27.212][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:27.213][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:27.214][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.215][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.217][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:27.218][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:27.219][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.220][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.221][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.222][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.223][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.225][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.226][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:27.227][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:27.228][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.229][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.230][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:27.232][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:27.233][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.234][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.235][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:27.236][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:27.237][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.238][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.239][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:27.241][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:27.242][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.243][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.244][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:27.245][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:27.246][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.248][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.249][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.250][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.251][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.252][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.253][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.255][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.256][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.257][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.258][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:27.259][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:27.260][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.262][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.263][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:27.264][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:27.265][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.266][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.267][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:27.269][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:27.270][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.271][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.272][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:27.273][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:27.275][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.276][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.277][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.278][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.279][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.280][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.282][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:27.283][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:27.284][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.285][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.286][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:27.288][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:27.289][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.290][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.291][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:27.292][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:27.293][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.294][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.296][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:27.297][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:27.298][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.299][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.300][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:27.302][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:27.303][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.304][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.305][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.306][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.307][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.309][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.310][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.311][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.312][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.313][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.315][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:27.316][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:27.317][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.318][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.319][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:27.320][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:27.322][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.323][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.324][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:27.325][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:27.348][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:27.349][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:27.350][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.351][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.353][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:27.354][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:27.355][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.356][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.357][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.359][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.360][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.361][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.362][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:27.363][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:27.364][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.365][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.367][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:27.368][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:27.369][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.370][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.371][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:27.372][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:27.374][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.375][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.376][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:27.377][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:27.378][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.379][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.381][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.382][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.383][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.384][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.385][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.386][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.388][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.389][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.390][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:27.391][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:27.392][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.393][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.394][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:27.396][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:27.397][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.398][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.399][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:27.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:27.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:27.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:27.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:27.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:27.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:27.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.418][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:27.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:27.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.428][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:27.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:27.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.433][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:27.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:27.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.467][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:27.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:27.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.472][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:27.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:27.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.477][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:27.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:27.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:27.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:27.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:27.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:27.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:27.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:27.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:27.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:27.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:27.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:27.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:27.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:27.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:27.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:27.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:27.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:27.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:27.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:27.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.545][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.550][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.555][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.560][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:27.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:27.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.564][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:27.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:27.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.569][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:27.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:27.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.574][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:27.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:27.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.579][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:27.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:27.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.583][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:27.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:27.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.595][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2023-10-14 11:08:27.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:27.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:27.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:27.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:27.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:27.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:27.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:27.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:27.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:27.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:27.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:27.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.620][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:27.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:27.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.625][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:27.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:27.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.639][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:27.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:27.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.644][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:27.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:27.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:27.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:27.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:27.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:27.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:27.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:27.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:27.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:27.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.667][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:27.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:27.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.672][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:27.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:27.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:27.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:27.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:27.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:27.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.695][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.700][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.705][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:27.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:27.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.710][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:27.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:27.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.715][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:27.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:27.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.719][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:27.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:27.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.724][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:27.725][private$selectFields]
biodb.TRACE[2023-10-14 11:08:27.726][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:27.727][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:27.728][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:27.730][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:27.731][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:27.732][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.733][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.734][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:27.736][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:27.737][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.738][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.739][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.740][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.741][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.742][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.744][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:27.745][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:27.746][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.747][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.749][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:27.750][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:27.751][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.752][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.753][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:27.755][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:27.756][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.757][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.758][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:27.759][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:27.761][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.762][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.763][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:27.764][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:27.765][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.767][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.768][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.769][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.770][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.772][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.773][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.774][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.775][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.776][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.778][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:27.779][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:27.780][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.781][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.783][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:27.784][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:27.785][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.786][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.787][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:27.789][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:27.790][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.791][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.792][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:27.793][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:27.795][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.796][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.797][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.798][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.799][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.800][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.802][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:27.803][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:27.804][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.805][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.806][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:27.808][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:27.809][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.810][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.811][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:27.812][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:27.814][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.815][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.816][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:27.817][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:27.818][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.820][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.821][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:27.822][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:27.823][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.824][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.826][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.827][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.828][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.829][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.831][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.832][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.833][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.834][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.835][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:27.837][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:27.838][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.839][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.840][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:27.841][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:27.843][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.844][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.845][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:27.847][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:27.848][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:27.849][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:27.850][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.852][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.858][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:27.860][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:27.861][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.862][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.863][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.864][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.866][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.867][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.868][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:27.869][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:27.871][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.872][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.873][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:27.874][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:27.875][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.876][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.878][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:27.879][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:27.880][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.881][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.882][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:27.883][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:27.885][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.886][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.887][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:27.888][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:27.889][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.891][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.892][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.893][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:27.895][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.896][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.897][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.898][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:27.899][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.901][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.902][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:27.903][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:27.905][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.906][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.907][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:27.908][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:27.909][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.911][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.912][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:27.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:27.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:27.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:27.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:27.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:27.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:27.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.954][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:27.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:27.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.958][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:27.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:27.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.963][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:27.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:27.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:27.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.982][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:27.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:27.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.987][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:27.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:27.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.991][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:27.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:27.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:27.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:27.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:27.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:27.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:28.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:28.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.005][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:28.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:28.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:28.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:28.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:28.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:28.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:28.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:28.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.025][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:28.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:28.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.030][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:28.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:28.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.038][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:28.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:28.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:28.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:28.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:28.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:28.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:28.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:28.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.086][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:28.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:28.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.091][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:28.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:28.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.095][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:28.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:28.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.100][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:28.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:28.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:28.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:28.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.110][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:28.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:28.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.116][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:28.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:28.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.121][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:28.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:28.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.126][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:28.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:28.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.140][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [3017, 0, 3017, C16H18N4O7S, InChI=1S/C16H18N4O7S/c1-25-12-8-13(26-2)18-15(17-12)19-16(22)20-28(23,24)9-10-6-4-5-7-11(10)14(21)27-3/h4-8H,9H2,1-3H3,(H2,17,18,19,20,22), ...].
biodb.DEBUG[2023-10-14 11:08:28.141][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:08:28.142][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:08:28.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:28.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:28.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:28.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:28.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:28.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:28.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:28.169][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:28.174][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:28.175][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2023-10-14 11:08:28.177][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:28.179][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2023-10-14 11:08:28.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:28.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:28.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:28.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:28.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:28.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:28.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:28.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:28.212][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:28.216][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:28.218][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2023-10-14 11:08:28.219][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:28.221][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2023-10-14 11:08:28.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:28.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:28.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:28.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:28.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:28.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:28.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:28.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:28.253][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:28.263][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:28.264][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2023-10-14 11:08:28.266][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:28.268][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2023-10-14 11:08:28.270][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:08:28.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:28.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:28.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:28.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:28.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:28.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:28.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:28.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:28.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:28.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:28.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:28.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.296][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:28.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:28.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.301][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:28.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:28.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:28.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:28.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:28.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:28.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.315][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:28.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:28.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.321][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:28.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:28.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:28.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:28.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:28.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:28.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:28.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:28.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:28.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:28.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.346][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:28.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:28.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.351][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:28.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:28.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:28.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:28.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:28.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:28.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.376][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:28.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:28.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.381][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:28.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:28.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.385][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:28.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:28.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.390][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:28.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:28.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.395][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:28.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:28.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.399][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:28.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:28.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.404][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:28.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:28.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.409][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:28.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:28.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.413][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:28.414][private$selectFields]
biodb.TRACE[2023-10-14 11:08:28.415][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:28.417][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:28.418][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:28.419][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:28.420][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:28.421][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.422][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.423][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:28.425][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:28.426][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.427][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.428][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:28.429][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:28.430][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.431][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.433][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:28.434][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:28.435][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.436][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.437][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:28.438][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:28.440][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.441][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.442][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:28.443][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:28.444][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.445][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.447][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:28.448][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:28.449][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.450][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.451][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.453][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.454][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.455][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.456][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:28.457][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:28.458][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.460][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.461][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:28.462][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:28.463][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.464][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.465][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:28.467][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:28.468][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.469][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.470][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:28.471][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:28.473][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.474][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.475][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:28.476][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:28.477][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.478][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.479][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:28.481][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:28.482][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.483][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.484][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:28.485][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:28.486][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.487][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.488][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:28.490][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:28.491][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.492][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.493][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:28.494][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:28.495][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.496][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.498][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:28.499][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:28.500][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.501][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.502][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:28.503][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:28.504][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.506][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.507][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:28.508][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:28.509][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.510][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.511][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.512][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.514][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.515][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.516][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:28.517][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:28.518][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.519][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.520][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:28.522][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:28.523][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.524][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.525][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:28.526][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:28.527][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.529][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.530][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:28.531][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:28.532][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.533][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.534][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:28.535][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:28.537][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.538][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.539][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:28.540][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:28.541][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:28.542][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:28.543][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.545][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.546][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:28.547][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:28.548][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.549][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.550][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:28.551][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:28.553][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.554][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.555][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:28.556][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:28.557][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.558][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.559][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:28.561][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:28.562][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.563][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.564][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:28.565][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:28.566][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.567][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.569][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.570][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.571][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.572][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.573][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:28.574][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:28.575][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.577][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.578][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:28.579][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:28.580][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.581][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.582][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:28.584][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:28.585][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.586][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.587][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:28.588][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:28.589][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.590][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.592][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:28.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:28.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:28.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:28.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:28.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:28.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:28.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.612][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:28.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:28.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.616][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:28.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:28.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.621][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:28.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:28.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:28.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:28.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:28.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:28.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:28.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:28.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.640][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:28.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:28.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.645][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:28.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:28.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.649][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:28.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:28.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:28.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:28.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:28.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:28.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:28.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:28.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:28.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:28.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:28.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:28.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:28.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:28.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:28.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:28.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:28.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:28.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:28.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:28.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.711][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:28.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:28.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.715][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:28.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:28.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.720][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:28.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:28.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.725][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:28.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:28.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.730][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:28.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:28.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.735][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:28.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:28.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.740][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:28.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:28.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.744][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:28.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:28.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.749][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:28.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:28.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.760][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2023-10-14 11:08:28.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:28.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:28.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:28.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:28.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:28.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:28.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:28.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:28.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:28.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:28.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:28.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.784][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:28.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:28.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.810][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:28.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:28.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:28.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:28.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:28.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:28.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.824][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:28.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:28.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.829][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:28.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:28.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:28.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:28.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:28.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:28.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:28.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:28.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:28.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:28.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.854][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:28.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:28.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.858][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:28.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:28.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:28.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:28.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:28.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:28.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.884][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:28.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:28.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.889][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:28.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:28.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.893][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:28.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:28.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.898][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:28.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:28.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.903][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:28.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:28.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.907][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:28.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:28.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.912][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:28.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:28.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.917][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:28.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:28.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.922][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:28.923][private$selectFields]
biodb.TRACE[2023-10-14 11:08:28.924][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:28.925][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:28.926][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:28.927][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:28.928][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:28.930][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.931][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.932][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:28.933][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:28.934][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.935][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.936][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:28.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:28.939][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.940][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.941][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:28.942][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:28.943][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.944][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.946][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:28.947][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:28.948][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.949][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.950][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:28.951][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:28.952][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.953][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.955][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:28.956][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:28.957][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.958][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.959][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.960][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:28.962][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.963][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.964][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:28.965][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:28.966][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.967][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.973][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:28.975][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:28.976][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.977][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.978][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:28.979][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:28.980][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.981][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.983][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:28.984][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:28.985][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.986][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.987][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:28.988][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:28.989][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.991][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.992][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:28.993][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:28.994][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:28.995][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:28.996][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:28.998][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:28.999][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.000][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.001][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:29.002][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:29.003][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.004][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.006][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:29.007][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:29.008][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.009][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.010][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:29.011][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:29.013][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.014][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.015][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:29.016][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:29.017][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.018][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.019][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:29.021][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:29.022][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.023][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.024][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.025][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.026][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.027][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.029][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:29.030][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:29.032][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.033][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.034][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:29.035][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:29.036][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.038][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.039][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:29.040][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:29.041][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.042][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.044][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:29.045][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:29.046][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.047][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.048][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:29.050][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:29.051][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.052][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.053][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:29.054][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:29.056][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:29.057][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:29.058][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.059][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.061][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:29.062][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:29.063][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.064][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.066][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:29.067][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:29.068][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.069][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.071][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:29.072][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:29.073][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.075][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.076][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:29.077][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:29.079][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.080][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.081][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:29.082][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:29.083][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.084][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.086][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:29.087][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:29.088][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.089][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.091][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.092][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.093][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.094][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.096][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:29.097][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:29.098][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.099][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.101][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:29.102][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:29.103][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.104][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.106][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:29.107][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:29.108][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.109][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.110][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:29.112][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:29.113][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.114][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.116][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:29.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:29.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:29.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:29.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:29.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:29.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:29.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.132][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:29.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:29.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.137][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:29.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:29.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.142][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:29.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:29.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:29.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:29.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:29.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:29.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:29.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:29.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.162][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:29.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:29.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.167][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:29.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:29.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.172][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:29.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:29.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:29.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:29.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:29.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:29.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:29.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:29.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:29.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:29.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:29.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:29.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:29.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:29.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.210][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:29.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:29.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.215][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:29.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:29.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.220][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:29.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:29.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:29.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:29.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:29.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:29.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:29.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:29.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.255][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:29.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:29.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.260][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:29.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:29.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.266][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:29.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:29.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.271][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:29.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:29.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.276][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:29.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:29.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.281][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:29.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:29.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.287][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:29.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:29.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.292][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:29.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:29.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.297][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:29.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:29.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.309][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2023-10-14 11:08:29.311][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:08:29.312][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:08:29.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:29.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:29.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:29.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:29.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:29.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:29.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:29.340][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:29.345][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:29.346][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2023-10-14 11:08:29.348][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:29.350][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2023-10-14 11:08:29.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:29.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:29.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:29.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:29.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:29.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:29.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:29.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:29.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:29.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:29.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:29.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:29.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:29.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:29.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:29.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:29.412][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:29.416][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:29.418][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2023-10-14 11:08:29.419][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:29.421][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2023-10-14 11:08:29.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:29.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:29.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:29.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:29.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:29.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:29.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:29.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:29.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:29.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:29.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:29.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:29.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:29.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:29.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:29.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:29.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:29.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:29.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:29.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:29.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:29.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:29.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:29.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:29.512][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:08:29.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:29.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:29.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:29.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:29.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:29.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:29.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:29.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:29.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:29.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:29.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:29.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.568][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:29.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:29.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.572][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:29.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:29.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:29.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:29.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:29.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:29.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.587][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:29.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:29.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.592][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:29.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:29.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:29.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:29.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:29.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:29.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:29.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:29.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:29.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:29.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.618][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:29.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:29.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.623][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:29.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:29.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:29.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:29.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:29.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:29.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.651][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:29.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:29.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.656][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:29.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:29.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.660][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:29.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:29.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.665][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:29.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:29.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.670][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:29.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:29.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.675][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:29.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:29.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.680][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:29.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:29.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.684][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:29.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:29.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.690][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:29.691][private$selectFields]
biodb.TRACE[2023-10-14 11:08:29.692][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:29.693][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:29.694][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:29.696][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:29.697][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:29.699][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.700][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.701][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:29.702][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:29.704][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.705][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.706][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:29.708][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:29.709][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.710][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.711][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:29.713][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:29.714][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.716][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.717][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:29.718][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:29.720][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.721][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.722][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:29.724][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:29.725][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.727][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.728][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:29.729][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:29.731][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.732][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.734][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.741][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.742][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.744][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.745][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:29.746][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:29.747][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.749][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.750][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:29.751][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:29.752][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.753][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.754][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:29.756][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:29.757][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.758][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.759][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:29.760][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:29.762][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.763][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.764][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:29.765][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:29.766][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.767][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.768][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:29.770][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:29.771][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.772][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.773][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:29.774][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:29.775][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.777][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.778][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:29.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:29.780][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.781][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.782][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:29.784][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:29.785][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.786][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.787][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:29.788][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:29.789][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.790][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.792][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:29.793][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:29.794][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.795][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.796][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:29.797][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:29.799][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.800][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.801][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.803][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.804][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.805][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.806][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:29.808][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:29.809][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.810][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.811][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:29.812][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:29.814][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.815][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.816][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:29.817][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:29.818][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.820][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.821][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:29.822][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:29.823][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.824][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.826][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:29.827][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:29.828][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.829][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.830][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:29.832][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:29.833][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:29.834][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:29.835][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.836][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.838][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:29.839][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:29.840][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.841][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.842][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:29.844][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:29.845][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.847][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.848][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:29.849][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:29.850][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.851][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.853][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:29.854][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:29.855][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.857][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.858][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:29.859][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:29.860][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.861][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.863][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:29.864][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:29.865][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.866][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.868][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.869][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:29.870][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.871][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.873][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:29.874][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:29.875][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.876][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.878][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:29.879][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:29.880][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.881][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.883][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:29.884][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:29.885][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.886][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.887][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:29.889][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:29.890][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.891][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.892][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:29.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:29.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:29.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:29.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:29.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:29.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:29.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.908][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:29.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:29.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.913][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:29.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:29.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.918][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:29.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:29.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:29.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:29.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:29.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:29.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:29.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:29.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.938][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:29.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:29.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.943][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:29.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:29.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.948][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:29.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:29.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:29.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:29.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:29.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:29.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:29.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:29.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:29.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:29.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:29.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:29.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:29.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:29.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.983][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:29.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:29.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.988][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:29.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:29.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.993][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:29.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:29.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:29.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:29.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.032][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.038][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.043][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.048][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:30.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:30.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.054][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:30.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:30.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.059][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:30.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:30.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.064][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:30.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:30.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.070][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:30.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:30.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.074][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:30.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:30.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.088][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2023-10-14 11:08:30.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:30.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:30.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:30.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:30.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:30.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:30.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:30.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:30.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:30.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:30.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:30.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.128][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:30.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:30.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.134][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:30.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:30.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:30.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:30.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:30.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:30.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.151][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:30.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:30.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.155][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:30.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:30.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:30.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:30.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.165][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:30.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:30.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:30.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:30.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.175][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:30.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:30.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.180][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:30.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:30.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.185][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:30.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:30.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.210][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.215][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.220][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:30.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:30.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.225][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:30.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:30.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.229][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:30.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:30.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.235][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:30.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:30.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.240][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:30.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:30.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.245][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:30.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:30.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.251][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:30.252][private$selectFields]
biodb.TRACE[2023-10-14 11:08:30.253][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:30.254][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:30.256][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:30.257][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:30.258][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:30.259][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.260][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.262][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:30.263][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:30.264][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.265][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.266][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:30.268][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:30.269][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.270][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.308][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:30.310][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:30.311][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.312][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.314][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:30.315][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:30.316][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.317][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.318][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:30.320][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:30.321][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.322][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.323][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:30.325][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:30.326][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.327][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.329][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.330][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.331][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.332][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.333][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.335][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.336][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.337][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.338][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.339][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.341][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.342][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.343][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:30.345][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:30.346][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.348][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.349][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:30.350][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:30.352][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.353][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.354][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:30.356][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:30.357][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.358][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.359][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:30.360][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:30.362][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.363][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.364][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:30.366][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:30.367][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.368][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.369][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:30.371][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:30.372][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.373][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.375][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:30.376][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:30.378][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.379][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.380][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:30.381][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:30.383][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.384][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.385][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:30.387][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:30.388][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.389][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.390][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:30.391][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:30.393][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.394][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.395][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.396][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.397][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.399][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.400][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.401][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.402][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.403][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.405][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.406][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.407][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.408][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.409][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:30.411][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:30.412][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.413][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.414][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:30.415][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:30.416][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.418][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.419][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:30.420][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:30.421][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.422][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.423][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:30.425][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:30.426][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:30.428][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:30.429][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.430][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.431][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:30.432][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:30.433][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.434][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.436][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:30.437][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:30.439][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.440][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.441][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:30.443][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:30.444][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.445][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.446][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:30.448][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:30.449][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.450][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.451][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:30.452][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:30.454][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.455][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.456][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:30.457][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:30.458][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.460][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.461][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.462][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.464][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.465][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.466][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.467][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.469][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.470][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.471][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.473][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.474][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.475][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.476][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:30.478][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:30.479][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.480][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.481][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:30.483][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:30.484][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.486][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.487][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:30.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:30.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:30.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:30.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:30.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:30.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:30.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.504][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:30.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:30.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.509][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:30.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:30.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.514][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:30.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:30.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:30.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:30.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:30.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:30.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:30.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:30.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.540][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:30.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:30.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.545][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:30.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:30.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.550][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:30.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:30.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.555][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:30.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:30.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:30.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:30.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.565][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:30.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:30.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:30.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:30.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:30.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:30.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:30.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:30.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.584][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:30.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:30.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.589][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:30.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:30.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.594][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:30.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:30.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.628][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.633][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.638][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.643][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:30.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:30.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.648][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:30.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:30.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.653][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:30.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:30.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.658][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:30.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:30.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.663][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:30.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:30.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.668][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:30.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:30.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.681][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2023-10-14 11:08:30.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:30.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:30.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:30.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:30.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:30.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:30.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:30.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:30.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:30.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:30.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:30.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.707][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:30.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:30.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.711][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:30.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:30.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:30.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:30.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:30.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:30.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.726][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:30.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:30.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.731][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:30.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:30.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:30.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:30.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:30.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:30.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:30.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:30.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:30.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:30.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.756][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:30.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:30.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.760][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:30.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:30.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.785][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.790][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.795][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:30.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:30.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.800][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:30.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:30.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.805][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:30.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:30.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.810][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:30.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:30.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.815][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:30.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:30.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.820][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:30.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:30.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.825][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:30.826][private$selectFields]
biodb.TRACE[2023-10-14 11:08:30.827][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:30.828][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:30.830][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:30.831][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:30.832][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:30.833][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.834][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.836][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:30.837][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:30.838][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.839][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.841][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:30.842][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:30.843][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.844][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.846][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:30.847][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:30.848][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.849][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.850][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:30.852][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:30.853][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.854][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.855][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:30.856][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:30.858][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.859][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.860][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:30.861][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:30.862][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.864][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.865][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.866][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.867][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.868][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.870][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.871][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.872][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.873][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.874][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.876][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.877][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.878][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.879][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:30.881][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:30.882][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.888][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.890][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:30.891][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:30.892][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.894][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.895][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:30.896][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:30.898][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.899][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.900][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:30.901][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:30.902][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.903][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.905][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:30.906][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:30.907][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.908][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.909][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:30.911][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:30.912][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.913][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.914][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:30.915][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:30.917][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.918][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.919][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:30.920][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:30.921][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.923][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.924][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:30.925][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:30.926][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.927][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.928][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:30.930][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:30.931][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.932][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.933][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.934][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:30.968][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.970][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.971][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.973][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:30.974][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.975][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.976][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.977][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:30.979][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.980][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.981][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:30.982][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:30.983][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.984][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:30.985][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:30.987][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:30.988][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:30.989][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.002][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:31.003][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:31.004][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.006][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.007][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:31.008][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:31.010][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:31.011][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:31.012][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.013][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.015][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:31.016][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:31.017][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.018][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.020][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:31.021][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:31.022][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.024][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.025][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:31.026][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:31.027][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.028][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.030][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:31.031][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:31.033][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.034][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.035][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:31.036][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:31.038][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.039][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.040][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.041][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.042][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.044][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.045][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:31.047][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:31.048][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.049][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.050][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:31.052][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:31.053][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.054][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.055][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:31.057][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:31.058][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.059][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.060][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:31.062][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:31.063][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.064][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.065][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:31.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:31.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:31.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:31.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:31.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:31.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:31.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.082][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:31.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:31.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.087][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:31.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:31.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.092][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:31.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:31.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:31.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:31.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:31.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:31.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:31.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:31.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.112][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:31.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:31.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.117][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:31.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:31.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.122][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:31.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:31.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:31.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:31.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:31.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:31.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:31.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:31.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.141][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:31.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:31.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:31.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:31.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.151][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:31.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:31.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:31.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:31.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:31.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:31.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:31.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:31.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.186][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:31.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:31.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.191][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:31.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:31.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.196][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:31.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:31.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.201][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:31.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:31.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.205][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:31.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:31.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:31.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:31.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.215][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:31.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:31.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.220][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:31.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:31.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.225][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:31.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:31.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.237][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2023-10-14 11:08:31.239][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:08:31.240][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:08:31.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:31.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:31.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:31.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:31.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:31.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:31.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:31.260][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:31.264][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:31.266][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2023-10-14 11:08:31.267][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:31.269][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2023-10-14 11:08:31.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:31.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:31.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:31.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:31.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:31.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:31.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:31.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:31.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:31.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:31.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:31.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:31.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:31.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:31.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:31.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:31.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:31.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:31.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:31.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:31.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:31.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:31.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:31.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:31.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:31.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:31.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:31.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:31.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:31.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:31.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:31.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:31.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:31.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:31.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:31.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:31.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:31.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:31.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:31.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:31.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:31.423][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:31.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:31.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:31.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:31.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:31.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:31.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:31.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:31.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:31.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:31.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:31.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:31.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:31.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:31.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:31.483][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:31.487][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:31.489][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2023-10-14 11:08:31.491][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:31.492][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2023-10-14 11:08:31.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:31.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:31.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:31.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:31.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:31.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:31.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:31.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:31.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:31.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:31.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:31.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:31.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:31.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:31.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:31.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:31.555][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:31.559][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:31.561][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dd9d19fb78fcc7453eff2e9dd7ba5702".
biodb.TRACE[2023-10-14 11:08:31.563][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:31.565][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content".
biodb.DEBUG[2023-10-14 11:08:31.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:31.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:31.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:31.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:31.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:31.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:31.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:31.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:31.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:31.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:31.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:31.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:31.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:31.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:31.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:31.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:31.651][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:08:31.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:31.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:31.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:31.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:31.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:31.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:31.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:31.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:31.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:31.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:31.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:31.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.683][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:31.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:31.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.688][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:31.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:31.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:31.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:31.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:31.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:31.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.703][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:31.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:31.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.707][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:31.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:31.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.712][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:31.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:31.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.717][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:31.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:31.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.722][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:31.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:31.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:31.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:31.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.731][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:31.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:31.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.736][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:31.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:31.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:31.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:31.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:31.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:31.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.760][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:31.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:31.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.766][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:31.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:31.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:31.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:31.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.776][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:31.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:31.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.780][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:31.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:31.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:31.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:31.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.790][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:31.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:31.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.795][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:31.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:31.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.800][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:31.801][private$selectFields]
biodb.TRACE[2023-10-14 11:08:31.802][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:31.804][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:31.805][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:31.806][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:31.807][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:31.809][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.810][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.811][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:31.812][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:31.814][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.815][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.816][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:31.818][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:31.819][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.820][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.821][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:31.823][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:31.824][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.825][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.826][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:31.828][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:31.829][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.830][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.832][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:31.833][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:31.834][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.836][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.837][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:31.839][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:31.840][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.841][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.842][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.844][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.845][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.846][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.848][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:31.849][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:31.850][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.852][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.853][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:31.854][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:31.855][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.856][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.858][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:31.859][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:31.860][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.861][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.862][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:31.864][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:31.865][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.866][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.867][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:31.869][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:31.870][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.871][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.872][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:31.873][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:31.875][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.876][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.877][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:31.878][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:31.879][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.881][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.882][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:31.883][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:31.884][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.886][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.887][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:31.888][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:31.889][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.890][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.892][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:31.893][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:31.894][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.895][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.896][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:31.898][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:31.899][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.900][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.901][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:31.903][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:31.904][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.905][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.906][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.907][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.909][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.910][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.911][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:31.912][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:31.914][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.915][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.916][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:31.917][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:31.918][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.920][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.921][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:31.922][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:31.923][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.925][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.926][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:31.927][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:31.929][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.930][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.931][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:31.932][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:31.934][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.935][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.936][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:31.937][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:31.939][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:31.940][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:31.941][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.942][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.943][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:31.945][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:31.946][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.947][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.948][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:31.950][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:31.951][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.952][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.953][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:31.955][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:31.956][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.957][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.958][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:31.959][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:31.961][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.962][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.963][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:31.964][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:31.965][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.967][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.968][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:31.969][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:31.970][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.971][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.973][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.974][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:31.975][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.976][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.977][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:31.979][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:31.980][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.981][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.982][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:31.984][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:31.985][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.986][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.987][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:31.988][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:31.990][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.991][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.992][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:31.993][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:31.995][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:31.996][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:31.997][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:31.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:32.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:32.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:32.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:32.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:32.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:32.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.014][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:32.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:32.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.019][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:32.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:32.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.024][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:32.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:32.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.051][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:32.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:32.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.056][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:32.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:32.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.061][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:32.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:32.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.066][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:32.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:32.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:32.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:32.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.077][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:32.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:32.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.097][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:32.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:32.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.102][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:32.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:32.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.108][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:32.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:32.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:32.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:32.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:32.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:32.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:32.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:32.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:32.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:32.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:32.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:32.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:32.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:32.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.144][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:32.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:32.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.150][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:32.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:32.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.156][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:32.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:32.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.162][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:32.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:32.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.167][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:32.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:32.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.173][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:32.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:32.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.179][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:32.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:32.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.202][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:32.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:32.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.207][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:32.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:32.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.220][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2023-10-14 11:08:32.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:32.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:32.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:32.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:32.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:32.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:32.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:32.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:32.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:32.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:32.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:32.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.247][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:32.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:32.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.252][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:32.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:32.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.268][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:32.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:32.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.274][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:32.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:32.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:32.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:32.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.285][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:32.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:32.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.299][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:32.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:32.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.304][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:32.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:32.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:32.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:32.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:32.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:32.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:32.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:32.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:32.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:32.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.330][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:32.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:32.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.335][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:32.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:32.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.340][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:32.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:32.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.345][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:32.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:32.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.350][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:32.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:32.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.355][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:32.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:32.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.360][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:32.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:32.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.365][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:32.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:32.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.370][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:32.371][private$selectFields]
biodb.TRACE[2023-10-14 11:08:32.372][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:32.373][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:32.374][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:32.376][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:32.377][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:32.378][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.379][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.380][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:32.382][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:32.383][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.384][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.385][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.387][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.388][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.389][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.390][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:32.392][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:32.393][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.394][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.395][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:32.397][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:32.398][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.399][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.400][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.402][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.403][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.404][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.405][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:32.407][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:32.408][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.409][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.410][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:32.411][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:32.413][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.414][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.415][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:32.416][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:32.417][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.419][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.420][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:32.421][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:32.422][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.423][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.425][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:32.426][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:32.427][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.428][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.429][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:32.431][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:32.432][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.433][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.440][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:32.441][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:32.442][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.444][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.445][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:32.446][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:32.447][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.448][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.449][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:32.451][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:32.452][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.453][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.454][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.455][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.457][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.458][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.459][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:32.460][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:32.461][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.462][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.464][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:32.465][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:32.466][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.467][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.468][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.470][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.471][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.472][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.473][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:32.474][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:32.475][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.477][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.478][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:32.479][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:32.480][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.481][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.483][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:32.484][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:32.485][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.486][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.487][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:32.489][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:32.490][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.491][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.492][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:32.493][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:32.494][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.496][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.497][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:32.498][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:32.499][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.500][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.502][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:32.503][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:32.504][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.505][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.506][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:32.508][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:32.509][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:32.510][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:32.511][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.512][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.513][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:32.515][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:32.516][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.517][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.518][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.519][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.520][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.522][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.523][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:32.524][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:32.525][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.526][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.527][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:32.529][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:32.530][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.531][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.532][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.534][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.535][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.536][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.537][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:32.538][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:32.540][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.541][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.542][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:32.543][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:32.544][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.545][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.547][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:32.548][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:32.549][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.550][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.551][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:32.553][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:32.554][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.555][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.556][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:32.558][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:32.559][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.560][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.561][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:32.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:32.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:32.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:32.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:32.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:32.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:32.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.577][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:32.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:32.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.582][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:32.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:32.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.587][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:32.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:32.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.608][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:32.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:32.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.613][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:32.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:32.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.618][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:32.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:32.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:32.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:32.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:32.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:32.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:32.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:32.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.649][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:32.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:32.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:32.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:32.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:32.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:32.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:32.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:32.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:32.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:32.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:32.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:32.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.685][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:32.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:32.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.690][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:32.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:32.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.696][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:32.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:32.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.701][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:32.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:32.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:32.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:32.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:32.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:32.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.716][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:32.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:32.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:32.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:32.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.726][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:32.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:32.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.738][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2023-10-14 11:08:32.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:32.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:32.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:32.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:32.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:32.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:32.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:32.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:32.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:32.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:32.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:32.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.762][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:32.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:32.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.767][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:32.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:32.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.781][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:32.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:32.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.786][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:32.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:32.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:32.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:32.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:32.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:32.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.818][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:32.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:32.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.823][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:32.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:32.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:32.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:32.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:32.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:32.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:32.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:32.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:32.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:32.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.847][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:32.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:32.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.851][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:32.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:32.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.857][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:32.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:32.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.862][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:32.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:32.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.867][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:32.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:32.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.872][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:32.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:32.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.877][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:32.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:32.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.881][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:32.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:32.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.886][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:32.887][private$selectFields]
biodb.TRACE[2023-10-14 11:08:32.889][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:32.890][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:32.891][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:32.892][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:32.893][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:32.895][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.896][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.897][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:32.898][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:32.899][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.900][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.902][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.903][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.904][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.905][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.906][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:32.908][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:32.909][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.910][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.911][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:32.912][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:32.914][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.915][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.916][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.917][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.918][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.919][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.921][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:32.922][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:32.923][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.924][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.925][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:32.927][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:32.928][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.929][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.930][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:32.931][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:32.933][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.951][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.953][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:32.954][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:32.956][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.957][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.958][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:32.959][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:32.960][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.961][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.963][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:32.964][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:32.965][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.966][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.967][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:32.968][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:32.970][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.971][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.972][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:32.973][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:32.974][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.975][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.977][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:32.978][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:32.979][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.980][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.981][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.983][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:32.984][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.985][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.986][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:32.987][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:32.988][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.989][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.991][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:32.992][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:32.993][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.994][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:32.995][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.997][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:32.998][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:32.999][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.000][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:33.001][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:33.003][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.004][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.005][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:33.006][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:33.008][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.009][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.010][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.012][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.013][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.014][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.015][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:33.017][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:33.018][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.019][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.020][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:33.023][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:33.024][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.026][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.027][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:33.028][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:33.029][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.031][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.032][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:33.033][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:33.035][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.036][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.037][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:33.038][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:33.040][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:33.041][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:33.042][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.044][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.045][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:33.046][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:33.047][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.049][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.050][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:33.051][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:33.053][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.055][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.056][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:33.057][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:33.059][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.061][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.062][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:33.063][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:33.065][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.066][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.067][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:33.068][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:33.070][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.071][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.072][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:33.074][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:33.075][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.076][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.077][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:33.078][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:33.080][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.081][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.082][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.083][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.084][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.086][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.087][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:33.088][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:33.089][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.091][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.092][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:33.093][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:33.094][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.096][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.097][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:33.098][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:33.099][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.101][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.102][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:33.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:33.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:33.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:33.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:33.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:33.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:33.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.118][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:33.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:33.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.123][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:33.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:33.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.128][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:33.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:33.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:33.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:33.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:33.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:33.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:33.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:33.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.148][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:33.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:33.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.154][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:33.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:33.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.159][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:33.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:33.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.165][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:33.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:33.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:33.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:33.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.175][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:33.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:33.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:33.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:33.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:33.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:33.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:33.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:33.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.201][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:33.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:33.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.205][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:33.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:33.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.210][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:33.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:33.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:33.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:33.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:33.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:33.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:33.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:33.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.245][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:33.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:33.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.249][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:33.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:33.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.254][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:33.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:33.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.259][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:33.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:33.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.264][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:33.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:33.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.269][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:33.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:33.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.275][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:33.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:33.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.280][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:33.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:33.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.285][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:33.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:33.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.297][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [3017, 0, 3017, C16H18N4O7S, InChI=1S/C16H18N4O7S/c1-25-12-8-13(26-2)18-15(17-12)19-16(22)20-28(23,24)9-10-6-4-5-7-11(10)14(21)27-3/h4-8H,9H2,1-3H3,(H2,17,18,19,20,22), ...].
biodb.DEBUG[2023-10-14 11:08:33.299][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:08:33.300][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-10-14 11:08:33.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:33.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:33.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:33.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:33.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:33.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:33.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:33.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:33.387][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:33.392][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:33.394][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2023-10-14 11:08:33.395][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:33.397][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2023-10-14 11:08:33.401][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:33.405][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:33.407][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2023-10-14 11:08:33.408][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:33.410][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2023-10-14 11:08:33.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:33.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:33.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:33.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:33.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:33.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:33.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:33.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:33.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:33.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:33.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:33.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:33.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:33.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:33.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:33.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:33.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:33.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:33.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:33.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:33.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:33.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:33.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:33.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:33.503][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:08:33.505][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:33.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:33.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:33.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:33.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:33.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:33.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:33.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:33.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:33.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:33.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:33.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.530][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:33.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:33.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.535][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:33.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:33.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:33.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:33.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:33.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:33.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.567][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:33.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:33.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.572][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:33.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:33.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:33.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:33.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:33.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:33.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:33.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:33.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:33.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:33.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.595][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:33.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:33.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.600][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:33.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:33.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:33.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:33.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:33.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:33.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.627][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:33.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:33.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.632][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:33.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:33.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.637][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:33.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:33.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.642][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:33.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:33.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.647][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:33.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:33.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.652][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:33.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:33.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.658][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:33.659][private$selectFields]
biodb.TRACE[2023-10-14 11:08:33.660][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:33.661][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:33.662][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:33.663][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:33.665][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:33.669][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.671][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.672][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:33.673][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:33.674][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.676][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.677][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:33.679][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:33.680][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.681][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.682][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:33.684][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:33.685][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.686][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.688][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:33.689][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:33.690][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.691][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.693][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:33.694][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:33.695][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.696][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.697][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:33.699][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:33.700][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.701][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.702][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:33.703][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:33.705][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.706][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.707][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.708][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.709][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.710][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.712][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:33.713][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:33.714][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.715][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.716][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:33.718][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:33.719][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.720][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.721][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:33.722][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:33.724][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.725][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.726][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:33.728][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:33.729][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.730][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.731][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:33.732][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:33.733][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.734][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.736][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:33.737][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:33.738][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.739][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.740][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:33.742][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:33.743][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.744][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.745][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:33.746][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:33.748][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.749][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.750][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:33.751][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:33.752][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.754][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.755][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:33.756][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:33.757][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.758][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.759][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:33.761][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:33.762][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.763][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.764][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.766][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.767][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.768][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.769][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:33.770][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:33.772][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.773][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.774][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:33.775][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:33.776][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.778][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.779][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:33.780][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:33.781][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.783][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.784][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:33.785][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:33.786][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:33.788][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:33.789][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.790][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.791][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:33.792][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:33.793][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.795][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.796][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:33.797][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:33.799][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.800][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.801][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:33.802][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:33.804][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.805][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.806][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:33.807][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:33.808][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.810][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.811][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:33.813][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:33.814][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.815][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.816][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:33.818][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:33.819][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.821][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.822][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:33.823][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:33.824][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.826][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.827][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.829][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:33.830][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.831][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.832][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:33.834][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:33.835][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.836][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.838][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:33.839][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:33.840][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.841][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.843][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:33.844][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:33.845][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.846][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.848][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:33.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:33.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:33.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:33.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:33.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:33.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:33.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.864][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:33.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:33.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.870][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:33.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:33.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.875][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:33.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:33.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:33.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:33.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:33.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:33.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:33.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:33.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.897][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:33.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:33.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.902][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:33.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:33.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.906][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:33.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:33.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:33.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:33.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.916][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:33.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:33.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:33.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:33.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.927][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:33.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:33.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:33.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:33.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:33.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:33.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.948][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:33.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:33.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.953][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:33.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:33.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.958][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:33.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:33.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:33.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:33.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:33.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:33.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:33.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:33.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:33.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:33.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.015][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.021][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.026][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.031][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:34.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:34.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:34.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:34.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.041][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:34.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:34.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.047][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:34.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:34.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.054][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:34.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:34.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.060][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:34.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:34.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.073][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2023-10-14 11:08:34.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:34.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:34.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:34.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:34.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:34.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:34.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:34.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:34.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:34.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:34.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:34.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.099][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:34.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:34.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.104][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:34.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:34.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.119][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:34.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:34.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.124][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:34.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:34.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.129][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:34.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:34.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:34.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:34.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:34.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:34.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.143][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:34.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:34.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.148][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:34.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:34.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.153][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:34.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:34.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:34.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:34.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:34.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:34.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.178][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.183][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.188][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:34.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:34.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.193][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:34.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:34.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.198][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:34.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:34.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.203][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:34.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:34.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.208][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:34.209][private$selectFields]
biodb.TRACE[2023-10-14 11:08:34.210][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:34.211][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:34.212][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:34.214][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:34.215][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:34.216][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.218][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.219][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:34.220][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:34.221][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.223][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.224][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.225][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.226][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.228][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.229][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:34.230][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:34.232][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.233][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.234][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:34.235][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:34.237][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.238][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.239][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:34.241][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:34.242][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.243][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.245][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:34.246][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:34.247][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.249][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.250][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:34.251][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:34.252][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.254][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.255][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.256][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.257][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.259][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.260][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.261][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.262][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.264][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.265][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:34.266][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:34.267][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.269][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.270][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:34.271][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:34.272][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.274][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.275][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:34.276][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:34.277][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.278][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.280][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:34.281][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:34.283][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.284][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.285][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.287][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.288][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.289][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.291][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:34.292][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:34.294][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.295][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.296][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:34.298][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:34.299][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.301][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.302][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:34.304][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:34.305][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.307][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.308][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:34.310][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:34.311][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.313][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.314][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:34.316][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:34.317][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.319][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.320][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.322][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.323][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.325][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.333][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.334][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.336][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.337][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.338][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:34.340][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:34.341][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.343][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.344][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:34.346][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:34.347][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.349][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.350][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:34.352][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:34.353][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:34.355][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:34.356][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.357][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.358][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:34.360][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:34.361][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.362][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.363][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.365][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.366][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.367][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.368][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:34.370][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:34.371][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.372][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.373][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:34.393][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:34.395][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.397][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.398][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:34.400][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:34.401][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.402][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.403][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:34.405][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:34.406][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.407][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.408][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:34.409][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:34.410][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.411][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.413][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.414][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.415][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.416][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.417][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.418][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.420][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.421][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.422][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:34.423][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:34.424][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.425][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.426][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:34.429][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:34.430][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.431][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.432][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:34.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:34.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:34.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:34.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:34.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:34.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:34.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.449][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:34.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:34.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.455][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:34.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:34.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.460][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:34.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:34.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.481][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:34.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:34.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.486][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:34.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:34.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.490][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:34.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:34.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.495][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:34.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:34.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:34.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:34.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:34.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:34.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:34.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:34.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:34.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:34.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:34.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:34.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.524][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:34.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:34.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.529][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:34.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:34.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.534][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:34.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:34.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:34.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:34.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:34.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:34.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:34.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:34.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.569][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.574][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.579][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.584][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:34.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:34.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.589][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:34.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:34.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.594][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:34.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:34.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.599][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:34.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:34.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.604][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:34.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:34.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.609][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:34.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:34.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.621][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2023-10-14 11:08:34.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:34.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:34.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:34.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:34.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:34.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:34.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:34.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:34.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:34.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:34.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:34.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.647][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:34.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:34.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.653][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:34.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:34.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.668][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:34.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:34.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.673][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:34.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:34.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:34.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:34.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:34.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:34.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:34.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:34.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.693][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:34.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:34.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.698][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:34.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:34.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.703][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:34.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:34.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:34.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:34.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:34.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:34.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.734][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.738][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.743][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:34.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:34.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.748][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:34.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:34.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.753][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:34.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:34.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.757][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:34.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:34.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.762][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:34.763][private$selectFields]
biodb.TRACE[2023-10-14 11:08:34.764][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:34.766][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:34.767][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:34.768][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:34.769][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:34.770][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.772][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.773][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:34.774][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:34.775][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.776][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.778][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.780][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.781][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.782][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:34.783][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:34.785][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.786][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.787][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:34.788][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:34.789][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.790][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.792][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:34.793][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:34.811][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.813][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.814][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:34.816][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:34.817][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.818][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.819][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:34.820][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:34.821][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.822][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.824][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.825][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.826][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.827][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.828][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.829][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.831][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.832][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.833][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:34.834][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:34.836][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.837][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.838][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:34.839][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:34.840][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.842][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.843][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:34.844][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:34.846][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.847][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.848][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:34.849][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:34.851][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.852][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.853][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.854][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.855][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.856][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.858][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:34.859][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:34.860][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.861][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.862][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:34.864][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:34.865][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.866][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.867][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:34.869][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:34.870][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.871][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.872][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:34.874][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:34.875][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.876][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.877][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:34.878][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:34.880][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.881][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.882][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.883][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.884][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.885][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.886][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.888][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.890][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.891][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.892][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:34.893][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:34.894][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.895][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.898][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:34.899][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:34.900][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.901][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.903][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:34.904][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:34.905][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:34.906][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:34.908][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.909][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.910][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:34.912][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:34.913][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.915][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.916][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.917][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.918][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.919][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.921][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:34.922][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:34.923][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.924][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.926][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:34.927][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:34.928][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.929][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.930][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:34.932][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:34.933][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.934][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.935][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:34.936][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:34.938][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.939][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.940][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.941][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:34.942][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.944][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.945][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.946][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:34.947][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.949][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.950][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:34.951][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:34.953][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.954][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.955][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:34.956][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:34.957][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.959][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.960][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:34.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:34.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:34.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:34.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:34.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:34.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:34.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.976][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:34.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:34.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.981][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:34.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:34.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.986][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:34.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:34.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:34.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:34.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:34.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:35.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:35.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.006][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:35.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:35.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.011][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:35.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:35.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.016][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:35.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:35.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:35.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:35.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:35.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:35.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:35.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:35.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.036][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:35.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:35.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:35.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:35.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.046][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:35.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:35.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:35.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:35.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:35.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:35.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:35.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:35.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.082][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:35.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:35.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.087][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:35.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:35.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.098][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:35.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:35.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.103][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:35.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:35.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.109][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:35.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:35.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.114][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:35.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:35.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.119][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:35.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:35.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.124][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:35.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:35.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.129][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:35.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:35.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.141][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2023-10-14 11:08:35.143][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:08:35.144][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:08:35.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:35.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:35.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:35.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:35.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:35.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:35.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:35.164][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:35.169][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:35.171][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2023-10-14 11:08:35.173][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:35.174][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2023-10-14 11:08:35.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:35.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:35.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:35.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:35.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:35.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:35.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:35.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:35.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:35.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:35.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:35.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:35.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:35.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:35.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:35.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:35.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:35.238][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:35.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:35.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:35.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:35.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:35.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:35.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:35.284][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:08:35.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:35.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:35.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:35.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:35.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:35.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:35.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:35.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:35.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:35.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:35.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:35.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.310][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:35.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:35.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.315][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:35.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:35.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:35.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:35.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:35.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:35.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.329][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:35.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:35.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.334][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:35.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:35.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:35.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:35.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:35.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:35.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:35.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:35.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:35.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:35.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.362][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:35.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:35.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.367][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:35.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:35.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:35.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:35.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:35.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:35.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.391][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:35.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:35.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.396][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:35.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:35.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.401][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:35.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:35.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.405][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:35.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:35.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.410][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:35.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:35.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.415][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:35.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:35.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.420][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:35.421][private$selectFields]
biodb.TRACE[2023-10-14 11:08:35.422][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:35.423][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:35.425][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:35.426][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:35.427][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:35.428][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.429][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.431][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:35.432][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:35.433][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.434][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.435][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:35.437][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:35.438][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.439][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.440][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:35.441][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:35.442][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.444][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.445][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:35.446][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:35.447][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.448][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.449][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:35.451][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:35.452][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.453][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.454][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:35.455][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:35.456][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.458][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.459][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:35.460][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:35.461][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.462][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.463][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.465][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.466][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.467][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.468][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:35.469][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:35.476][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.478][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.479][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:35.480][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:35.481][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.483][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.484][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:35.485][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:35.486][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.487][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.488][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:35.490][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:35.491][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.492][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.493][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:35.495][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:35.496][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.497][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.498][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:35.499][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:35.500][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.502][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.503][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:35.504][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:35.505][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.506][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.508][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:35.509][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:35.510][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.511][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.512][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:35.513][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:35.515][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.516][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.517][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:35.518][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:35.519][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.520][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.522][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:35.523][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:35.524][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.525][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.526][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.528][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.529][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.530][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.531][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:35.532][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:35.534][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.535][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.536][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:35.537][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:35.538][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.539][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.540][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:35.542][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:35.543][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.544][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.545][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:35.546][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:35.547][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:35.549][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:35.550][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.551][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.552][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:35.554][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:35.555][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.556][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.557][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:35.558][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:35.559][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.561][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.562][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:35.563][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:35.564][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.565][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.566][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:35.568][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:35.569][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.570][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.571][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:35.572][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:35.574][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.575][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.576][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:35.577][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:35.578][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.579][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.581][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:35.582][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:35.583][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.584][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.585][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.587][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.588][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.589][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.590][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:35.591][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:35.593][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.594][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.595][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:35.596][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:35.597][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.598][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.599][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:35.601][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:35.602][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.603][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.605][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:35.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:35.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:35.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:35.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:35.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:35.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:35.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.622][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:35.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:35.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.627][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:35.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:35.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.632][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:35.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:35.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:35.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:35.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:35.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:35.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:35.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:35.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.654][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:35.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:35.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.659][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:35.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:35.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.664][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:35.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:35.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:35.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:35.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:35.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:35.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:35.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:35.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:35.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:35.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:35.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:35.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:35.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:35.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.699][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:35.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:35.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.704][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:35.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:35.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.709][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:35.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:35.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:35.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:35.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:35.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:35.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:35.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:35.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.743][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:35.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:35.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.747][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:35.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:35.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.752][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:35.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:35.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:35.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:35.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.762][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:35.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:35.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.767][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:35.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:35.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.772][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:35.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:35.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.777][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:35.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:35.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.782][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:35.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:35.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.795][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2023-10-14 11:08:35.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:35.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:35.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:35.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:35.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:35.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:35.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:35.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:35.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:35.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:35.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:35.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.820][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:35.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:35.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.825][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:35.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:35.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:35.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:35.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:35.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:35.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:35.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:35.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.851][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:35.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:35.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:35.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:35.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:35.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:35.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.865][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:35.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:35.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.870][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:35.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:35.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.875][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:35.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:35.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.879][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:35.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:35.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:35.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:35.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:35.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:35.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.905][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:35.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:35.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.910][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:35.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:35.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.915][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:35.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:35.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.921][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:35.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:35.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.926][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:35.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:35.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.931][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:35.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:35.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.935][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:35.936][private$selectFields]
biodb.TRACE[2023-10-14 11:08:35.938][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:35.939][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:35.940][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:35.941][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:35.942][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:35.944][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.945][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.946][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:35.947][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:35.948][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.949][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.950][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:35.952][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:35.953][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.954][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.955][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:35.956][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:35.957][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.958][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.959][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:35.961][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:35.962][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.963][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.964][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:35.965][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:35.966][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.967][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.968][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:35.970][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:35.971][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.972][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.973][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:35.974][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:35.975][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.976][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.977][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.979][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:35.980][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.981][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.982][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:35.983][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:35.984][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.985][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.986][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:35.988][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:35.989][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.990][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.991][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:35.992][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:35.993][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.994][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:35.996][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:35.997][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:35.998][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:35.999][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.000][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:36.001][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:36.002][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.004][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.005][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:36.006][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:36.007][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.008][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.009][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:36.011][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:36.012][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.013][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.014][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:36.015][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:36.016][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.017][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.018][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:36.020][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:36.021][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.022][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.023][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:36.024][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:36.025][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.026][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.028][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:36.029][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:36.030][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.031][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.032][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.033][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.035][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.036][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.037][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:36.038][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:36.039][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.040][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.041][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:36.043][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:36.044][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.045][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.046][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:36.047][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:36.066][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.069][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.070][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:36.071][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:36.072][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:36.073][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:36.075][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.076][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.077][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:36.078][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:36.079][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.080][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.082][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:36.083][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:36.084][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.085][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.086][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:36.088][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:36.089][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.091][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.092][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:36.094][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:36.095][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.096][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.098][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:36.099][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:36.100][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.101][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.102][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:36.104][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:36.105][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.106][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.107][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.108][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.109][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.110][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.112][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:36.113][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:36.114][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.115][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.116][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:36.118][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:36.119][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.120][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.121][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:36.123][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:36.124][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.125][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.126][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:36.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:36.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:36.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:36.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:36.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:36.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:36.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.143][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:36.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:36.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.149][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:36.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:36.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.154][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:36.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:36.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:36.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:36.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:36.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:36.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:36.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:36.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.176][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:36.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:36.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.181][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:36.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:36.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.186][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:36.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:36.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:36.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:36.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:36.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:36.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:36.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:36.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:36.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:36.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.217][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:36.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:36.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:36.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:36.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:36.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:36.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:36.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:36.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:36.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:36.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.257][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:36.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:36.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.261][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:36.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:36.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.266][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:36.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:36.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.271][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:36.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:36.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.276][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:36.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:36.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.281][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:36.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:36.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.286][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:36.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:36.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.291][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:36.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:36.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.296][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:36.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:36.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.307][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2023-10-14 11:08:36.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:36.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:36.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:36.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:36.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:36.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:36.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:36.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:36.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:36.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:36.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:36.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.331][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:36.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:36.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.335][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:36.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:36.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:36.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:36.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:36.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:36.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.349][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:36.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:36.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.354][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:36.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:36.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:36.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:36.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:36.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:36.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.368][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:36.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:36.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:36.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:36.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.379][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:36.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:36.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.385][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:36.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:36.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:36.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:36.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:36.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:36.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.411][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:36.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:36.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.416][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:36.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:36.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.421][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:36.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:36.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.426][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:36.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:36.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.431][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:36.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:36.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.436][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:36.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:36.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.441][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:36.442][private$selectFields]
biodb.TRACE[2023-10-14 11:08:36.443][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:36.444][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:36.445][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:36.447][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:36.448][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:36.449][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.450][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.451][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:36.453][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:36.454][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.455][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.456][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:36.458][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:36.459][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.460][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.461][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:36.462][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:36.464][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.465][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.466][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:36.467][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:36.468][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.469][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.471][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:36.472][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:36.473][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.474][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.476][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:36.477][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:36.479][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.480][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.482][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:36.483][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:36.484][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.486][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.487][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.488][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.490][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.491][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.492][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:36.494][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:36.495][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.496][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.497][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:36.498][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:36.500][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.501][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.502][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:36.503][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:36.504][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.505][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.507][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:36.508][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:36.509][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.510][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.511][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:36.513][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:36.514][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.515][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.516][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:36.517][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:36.519][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.520][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.521][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:36.522][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:36.523][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.524][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.526][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:36.527][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:36.528][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.529][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.530][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:36.532][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:36.533][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.534][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.535][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:36.536][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:36.538][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.539][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.540][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:36.541][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:36.542][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.544][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.545][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.546][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.547][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.548][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.550][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:36.551][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:36.552][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.554][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.555][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:36.556][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:36.557][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.564][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.566][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:36.567][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:36.569][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.570][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.571][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:36.573][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:36.574][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:36.575][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:36.576][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.578][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.579][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:36.580][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:36.582][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.583][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.584][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:36.585][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:36.586][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.587][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.589][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:36.590][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:36.591][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.592][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.593][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:36.595][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:36.596][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.597][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.598][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:36.599][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:36.601][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.602][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.603][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:36.604][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:36.605][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.606][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.608][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.609][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.610][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.611][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.612][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:36.614][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:36.615][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.616][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.617][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:36.618][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:36.619][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.621][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.622][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:36.623][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:36.624][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.625][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.627][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:36.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:36.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:36.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:36.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:36.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:36.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:36.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.643][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:36.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:36.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.648][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:36.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:36.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.671][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:36.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:36.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:36.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:36.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:36.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:36.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:36.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:36.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.694][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:36.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:36.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.699][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:36.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:36.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.703][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:36.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:36.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:36.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:36.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:36.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:36.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.718][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:36.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:36.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.722][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:36.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:36.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:36.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:36.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.732][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:36.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:36.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:36.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:36.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:36.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:36.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:36.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:36.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.771][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:36.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:36.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.777][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:36.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:36.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.782][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:36.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:36.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.788][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:36.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:36.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.794][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:36.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:36.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:36.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:36.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.804][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:36.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:36.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.810][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:36.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:36.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:36.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:36.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.830][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2023-10-14 11:08:36.831][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:08:36.832][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:08:36.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:36.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:36.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:36.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:36.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:36.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:36.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:36.855][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:36.860][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:36.861][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2023-10-14 11:08:36.863][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:36.865][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2023-10-14 11:08:36.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:36.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:36.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:36.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:36.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:36.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:36.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:36.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:36.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:36.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:36.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:36.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:36.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:36.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:36.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:36.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:36.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:36.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:36.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:36.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:36.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:36.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:36.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:36.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:36.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:36.970][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:08:36.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:36.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:36.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:36.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:36.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:36.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:36.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:36.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:36.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:36.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:36.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:36.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:36.996][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:36.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:36.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:36.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.000][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:37.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:37.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.015][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:37.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:37.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.020][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:37.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:37.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.025][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:37.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:37.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:37.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:37.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.034][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.039][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.044][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:37.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:37.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.048][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:37.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:37.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.072][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.077][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.082][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:37.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:37.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.087][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:37.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:37.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.092][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:37.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:37.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.096][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:37.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:37.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.101][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:37.102][private$selectFields]
biodb.TRACE[2023-10-14 11:08:37.104][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:37.105][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:37.106][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:37.107][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:37.108][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:37.110][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.111][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.112][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:37.113][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:37.114][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.115][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.117][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.118][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.119][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.120][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.121][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:37.123][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:37.124][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.125][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.126][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:37.127][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:37.128][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.130][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.131][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.132][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.133][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.134][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.135][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:37.137][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:37.138][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.139][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.140][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.141][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.143][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.144][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.145][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.146][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.147][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.148][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.150][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.151][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.152][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.153][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.154][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:37.156][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:37.157][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.158][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.159][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:37.160][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:37.162][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.163][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.164][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:37.165][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:37.166][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.167][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.169][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:37.170][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:37.171][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.172][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.173][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.175][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.176][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.177][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.178][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:37.180][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:37.181][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.182][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.183][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:37.185][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:37.186][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.187][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.188][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.189][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.190][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.192][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.193][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:37.194][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:37.195][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.196][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.197][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.199][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.200][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.201][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.202][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.203][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.205][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.206][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.207][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.208][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.209][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.210][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.212][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:37.213][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:37.214][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.215][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.216][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:37.218][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:37.219][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.220][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.221][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:37.222][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:37.223][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:37.225][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:37.226][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.227][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.228][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:37.229][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:37.231][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.232][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.233][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.234][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.235][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.236][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.238][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:37.239][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:37.240][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.241][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.242][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:37.244][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:37.245][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.246][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.247][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.248][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.249][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.250][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.252][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:37.253][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:37.254][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.255][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.256][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.258][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.259][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.260][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.261][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.262][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.264][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.265][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.266][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.267][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.268][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.269][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.271][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:37.272][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:37.273][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.274][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.275][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:37.277][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:37.278][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.279][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.280][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:37.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:37.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:37.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:37.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:37.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:37.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:37.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.296][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:37.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:37.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.301][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:37.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:37.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.306][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:37.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:37.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.346][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:37.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:37.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.351][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:37.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:37.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.356][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:37.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:37.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.361][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:37.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:37.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.366][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:37.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:37.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:37.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:37.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.410][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:37.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:37.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.414][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:37.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:37.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.419][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:37.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:37.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.455][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.459][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.464][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.469][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:37.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:37.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:37.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:37.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.479][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:37.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:37.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.486][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:37.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:37.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.491][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:37.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:37.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.496][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:37.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:37.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.510][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2023-10-14 11:08:37.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:37.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:37.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:37.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:37.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:37.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:37.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:37.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:37.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:37.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:37.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:37.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.535][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:37.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:37.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.540][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:37.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:37.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.554][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:37.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:37.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.559][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:37.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:37.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.565][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:37.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:37.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:37.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:37.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.585][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:37.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:37.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.590][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:37.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:37.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.615][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.620][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.625][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:37.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:37.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.630][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:37.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:37.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.635][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:37.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:37.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.640][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:37.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:37.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.645][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:37.646][private$selectFields]
biodb.TRACE[2023-10-14 11:08:37.648][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:37.649][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:37.650][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:37.651][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:37.652][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:37.654][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.655][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.656][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:37.657][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:37.659][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.660][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.661][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.662][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.663][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.665][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.666][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:37.667][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:37.668][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.669][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.671][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:37.672][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:37.673][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.674][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.676][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.677][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.678][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.679][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.681][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:37.682][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:37.683][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.684][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.685][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.687][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.688][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.689][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.690][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.692][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.693][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.694][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.695][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.697][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.698][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.699][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.700][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:37.701][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:37.703][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.704][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.710][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:37.712][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:37.713][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.714][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.716][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:37.717][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:37.718][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.719][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.720][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:37.722][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:37.723][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.724][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.725][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.726][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.727][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.729][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.730][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:37.731][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:37.732][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.733][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.734][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:37.736][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:37.737][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.738][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.739][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.740][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.742][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.743][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.744][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:37.745][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:37.746][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.748][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.749][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.750][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.751][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.752][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.754][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.755][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.756][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.757][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.758][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.760][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.761][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.762][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.763][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:37.765][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:37.766][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.767][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.768][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:37.770][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:37.771][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.772][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.773][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:37.774][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:37.776][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:37.777][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:37.778][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.779][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.780][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:37.782][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:37.783][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.784][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.785][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.787][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.788][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.789][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.791][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:37.792][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:37.793][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.794][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.795][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:37.797][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:37.798][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.799][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.800][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.802][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.803][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.804][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.805][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.806][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.807][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.809][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.810][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.811][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.813][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.814][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.815][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.816][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.817][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.818][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.820][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:37.822][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:37.823][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.824][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.825][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:37.827][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:37.828][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.829][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.830][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:37.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:37.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:37.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:37.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:37.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:37.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:37.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.847][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:37.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:37.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.852][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:37.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:37.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.857][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:37.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:37.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:37.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.877][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:37.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:37.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.882][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:37.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:37.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.887][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:37.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:37.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:37.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:37.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:37.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:37.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:37.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:37.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:37.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:37.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:37.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.953][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.959][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.964][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:37.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.969][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:37.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:37.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.975][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:37.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:37.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.980][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:37.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:37.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.985][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:37.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:37.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.991][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:37.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:37.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:37.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:37.996][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:37.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:37.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.008][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2023-10-14 11:08:38.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:38.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:38.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:38.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:38.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:38.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:38.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:38.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:38.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:38.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:38.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:38.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.034][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:38.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:38.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.039][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:38.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:38.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:38.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:38.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:38.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:38.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.076][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:38.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:38.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.081][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:38.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:38.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:38.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:38.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:38.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:38.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:38.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:38.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:38.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:38.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.112][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:38.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:38.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.117][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:38.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:38.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:38.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:38.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:38.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:38.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.144][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:38.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:38.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.149][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:38.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:38.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.154][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:38.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:38.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.158][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:38.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:38.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.163][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:38.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:38.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.168][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:38.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:38.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.173][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:38.174][private$selectFields]
biodb.TRACE[2023-10-14 11:08:38.175][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:38.176][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:38.177][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:38.178][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:38.180][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:38.181][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.182][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.183][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:38.185][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:38.186][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.187][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.188][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:38.189][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:38.190][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.192][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.193][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:38.194][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:38.195][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.196][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.198][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:38.199][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:38.200][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.201][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.202][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:38.203][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:38.205][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.206][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.207][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:38.208][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:38.210][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.211][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.212][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:38.213][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:38.214][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.215][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.216][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.218][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.219][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.220][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.221][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:38.222][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:38.223][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.224][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.226][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:38.227][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:38.228][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.229][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.230][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:38.231][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:38.232][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.233][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.235][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:38.236][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:38.237][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.238][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.239][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:38.240][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:38.241][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.243][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.244][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:38.245][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:38.246][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.247][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.248][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:38.250][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:38.251][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.252][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.253][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:38.254][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:38.255][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.256][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.257][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:38.259][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:38.260][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.261][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.262][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:38.263][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:38.264][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.265][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.267][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:38.268][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:38.269][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.270][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.271][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.273][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.274][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.275][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.276][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:38.277][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:38.278][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.279][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.281][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:38.282][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:38.283][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.284][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.285][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:38.287][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:38.288][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.289][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.290][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:38.291][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:38.293][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:38.294][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:38.295][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.296][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.297][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:38.299][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:38.300][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.301][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.302][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:38.303][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:38.305][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.306][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.307][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:38.308][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:38.309][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.310][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.312][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:38.313][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:38.314][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.315][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.316][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:38.318][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:38.319][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.320][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.321][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:38.322][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:38.323][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.325][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.326][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.327][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.328][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.329][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.330][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:38.332][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:38.333][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.334][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.335][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:38.336][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:38.337][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.339][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.340][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:38.341][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:38.342][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.343][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.345][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:38.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:38.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:38.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:38.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:38.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:38.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:38.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.361][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:38.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:38.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.365][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:38.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:38.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.370][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:38.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:38.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:38.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:38.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:38.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:38.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:38.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:38.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.390][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:38.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:38.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.395][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:38.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:38.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.399][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:38.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:38.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:38.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:38.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:38.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:38.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:38.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:38.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:38.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:38.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:38.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:38.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:38.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:38.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:38.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:38.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:38.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:38.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:38.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:38.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.474][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:38.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:38.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.479][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:38.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:38.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.484][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:38.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:38.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.489][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:38.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:38.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:38.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:38.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.500][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:38.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:38.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.505][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:38.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:38.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.510][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:38.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:38.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.515][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:38.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:38.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.527][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2023-10-14 11:08:38.529][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:08:38.530][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:08:38.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:38.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:38.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:38.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:38.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:38.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:38.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:38.556][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:38.561][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:38.562][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2023-10-14 11:08:38.564][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:38.565][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2023-10-14 11:08:38.569][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:38.573][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:38.575][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2023-10-14 11:08:38.576][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:38.578][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2023-10-14 11:08:38.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:38.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:38.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:38.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:38.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:38.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:38.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:38.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:38.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:38.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:38.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:38.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:38.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:38.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:38.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:38.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:38.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:38.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:38.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:38.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:38.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:38.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:38.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:38.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:38.665][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:08:38.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:38.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:38.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:38.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:38.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:38.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:38.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:38.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:38.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:38.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:38.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:38.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.690][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:38.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:38.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.695][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:38.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:38.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:38.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:38.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:38.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:38.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.709][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:38.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:38.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.713][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:38.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:38.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.718][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:38.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:38.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:38.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:38.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:38.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:38.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.732][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:38.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:38.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.736][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:38.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:38.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.741][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:38.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:38.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:38.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:38.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:38.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:38.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.765][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:38.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:38.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.769][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:38.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:38.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.774][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:38.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:38.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.779][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:38.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:38.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.783][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:38.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:38.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.788][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:38.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:38.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.793][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:38.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:38.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.798][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:38.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:38.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.808][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:38.809][private$selectFields]
biodb.TRACE[2023-10-14 11:08:38.811][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:38.812][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:38.813][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:38.814][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:38.815][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:38.816][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.817][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.819][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:38.820][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:38.821][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.822][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.823][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:38.824][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:38.826][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.827][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.828][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:38.829][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:38.830][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.831][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.832][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:38.834][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:38.835][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.836][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.837][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:38.838][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:38.839][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.840][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.841][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:38.843][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:38.844][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.845][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.846][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:38.847][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:38.848][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.850][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.851][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.852][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.871][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.873][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.875][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:38.877][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:38.879][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.881][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.882][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:38.884][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:38.885][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.886][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.888][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:38.889][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:38.891][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.892][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.893][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:38.895][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:38.896][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.897][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.898][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:38.899][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:38.900][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.901][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.903][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:38.904][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:38.905][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.906][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.908][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:38.909][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:38.910][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.912][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.913][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:38.914][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:38.915][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.916][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.918][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:38.919][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:38.920][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.921][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.922][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:38.924][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:38.925][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.926][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.928][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:38.930][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:38.931][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.932][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.933][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:38.934][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:38.935][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.937][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.938][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.939][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:38.941][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.942][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.943][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:38.945][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:38.946][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.947][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.948][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:38.950][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:38.951][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.952][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.953][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:38.956][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:38.958][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.959][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.960][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:38.962][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:38.963][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.964][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.965][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:38.967][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:38.968][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:38.969][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:38.970][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.971][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.973][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:38.974][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:38.975][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.976][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.978][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:38.979][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:38.980][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.981][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.983][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:38.984][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:38.985][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.986][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.988][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:38.989][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:38.990][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.991][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.992][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:38.994][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:38.995][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:38.996][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:38.997][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:38.999][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:39.000][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.001][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.002][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.004][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.005][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.006][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.007][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.008][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.009][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.011][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.012][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.013][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.014][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.015][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.017][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:39.018][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:39.019][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.020][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.021][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:39.023][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:39.024][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.025][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.026][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:39.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:39.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:39.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:39.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:39.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:39.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:39.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.043][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:39.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:39.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.048][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:39.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:39.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.053][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:39.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:39.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:39.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:39.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:39.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:39.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:39.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:39.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.073][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:39.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:39.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.078][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:39.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:39.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.083][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:39.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:39.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:39.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:39.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:39.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:39.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.098][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:39.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:39.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.103][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:39.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:39.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:39.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:39.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:39.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:39.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.118][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:39.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:39.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.123][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:39.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:39.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.128][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:39.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:39.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.163][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.168][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.173][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.178][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:39.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:39.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.183][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:39.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:39.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.194][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:39.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:39.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.200][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:39.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:39.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.205][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:39.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:39.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.210][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:39.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:39.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.223][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2023-10-14 11:08:39.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:39.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:39.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:39.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:39.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:39.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:39.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:39.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:39.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:39.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:39.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:39.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.248][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:39.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:39.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.253][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:39.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:39.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:39.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:39.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:39.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:39.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.268][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:39.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:39.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.273][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:39.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:39.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:39.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:39.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:39.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:39.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.288][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:39.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:39.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:39.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:39.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.298][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:39.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:39.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.303][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:39.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:39.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.328][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.333][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.338][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:39.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:39.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.343][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:39.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:39.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.348][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:39.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:39.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.353][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:39.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:39.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.358][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:39.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:39.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.363][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:39.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:39.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.367][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:39.368][private$selectFields]
biodb.TRACE[2023-10-14 11:08:39.370][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:39.371][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:39.372][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:39.373][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:39.374][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:39.376][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.377][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.378][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:39.379][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:39.380][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.381][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.383][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:39.384][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:39.385][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.386][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.387][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:39.389][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:39.390][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.391][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.392][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:39.394][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:39.395][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.396][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.397][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:39.399][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:39.400][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.401][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.402][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:39.403][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:39.405][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.406][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.407][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.409][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.410][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.411][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.412][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.414][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.415][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.416][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.417][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.419][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.420][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.421][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.422][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:39.423][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:39.424][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.426][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.427][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:39.428][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:39.429][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.430][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.432][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:39.433][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:39.434][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.435][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.436][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:39.438][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:39.439][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.440][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.441][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:39.442][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:39.444][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.445][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.446][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:39.447][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:39.448][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.450][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.451][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:39.452][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:39.453][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.454][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.456][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:39.457][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:39.458][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.459][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.460][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:39.462][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:39.463][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.464][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.465][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:39.466][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:39.468][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.469][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.470][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.471][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.472][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.474][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.475][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.476][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.477][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.478][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.480][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.481][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.482][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.483][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.484][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:39.486][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:39.487][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.488][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.489][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:39.491][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:39.492][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.493][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.494][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:39.495][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:39.497][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.498][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.499][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:39.500][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:39.501][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:39.503][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:39.504][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.505][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.506][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:39.507][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:39.509][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.510][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.511][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:39.512][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:39.513][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.515][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.516][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:39.517][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:39.518][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.519][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.521][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:39.522][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:39.523][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.524][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.526][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:39.527][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:39.528][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.529][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.548][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:39.550][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:39.551][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.553][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.554][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.556][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.558][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.559][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.560][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.562][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.563][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.569][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.571][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.572][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.573][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.574][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.576][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:39.577][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:39.578][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.579][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.580][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:39.581][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:39.583][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.584][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.586][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:39.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:39.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:39.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:39.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:39.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:39.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:39.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.602][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:39.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:39.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.607][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:39.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:39.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.612][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:39.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:39.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:39.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:39.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:39.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:39.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:39.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:39.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.634][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:39.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:39.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.639][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:39.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:39.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.643][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:39.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:39.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:39.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:39.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:39.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:39.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:39.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:39.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:39.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:39.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:39.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:39.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:39.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:39.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.677][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:39.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:39.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.681][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:39.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:39.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.686][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:39.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:39.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.721][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.726][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.731][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.736][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:39.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:39.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.741][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:39.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:39.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.746][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:39.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:39.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.751][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:39.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:39.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.756][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:39.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:39.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.762][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:39.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:39.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.775][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2023-10-14 11:08:39.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:39.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:39.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:39.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:39.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:39.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:39.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:39.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:39.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:39.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:39.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:39.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.802][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:39.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:39.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.807][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:39.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:39.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:39.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:39.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:39.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:39.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.822][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:39.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:39.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.827][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:39.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:39.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:39.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:39.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:39.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:39.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:39.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:39.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:39.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:39.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.854][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:39.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:39.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.859][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:39.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:39.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.886][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.891][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.897][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:39.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:39.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.902][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:39.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:39.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.907][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:39.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:39.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.912][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:39.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:39.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.918][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:39.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:39.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.924][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:39.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:39.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.930][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:39.931][private$selectFields]
biodb.TRACE[2023-10-14 11:08:39.932][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:39.933][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:39.940][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:39.942][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:39.943][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:39.944][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.946][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.947][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:39.948][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:39.949][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.951][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.952][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:39.953][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:39.954][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.955][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.957][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:39.958][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:39.959][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.960][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.961][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:39.963][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:39.964][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.965][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.966][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:39.968][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:39.969][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.970][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.971][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:39.972][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:39.973][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.975][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.976][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.977][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:39.979][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.980][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.981][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.982][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:39.984][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.985][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.986][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.987][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:39.989][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.990][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.991][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:39.992][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:39.993][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.994][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:39.996][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:39.997][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:39.998][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:39.999][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.000][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:40.001][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:40.003][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.004][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.005][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:40.006][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:40.007][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.008][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.010][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:40.011][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:40.012][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.013][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.014][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:40.016][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:40.017][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.018][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.019][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:40.020][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:40.021][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.023][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.024][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:40.025][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:40.026][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.027][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.028][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:40.030][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:40.031][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.032][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.034][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:40.035][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:40.036][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.037][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.038][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:40.040][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:40.041][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.042][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.043][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.044][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.046][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.047][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.048][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:40.049][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:40.050][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.052][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.053][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:40.054][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:40.055][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.056][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.057][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:40.059][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:40.060][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.061][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.062][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:40.063][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:40.064][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.066][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.067][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:40.068][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:40.069][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:40.070][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:40.072][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.073][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.074][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:40.075][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:40.076][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.077][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.079][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:40.080][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:40.081][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.082][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.083][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:40.085][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:40.086][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.087][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.088][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:40.090][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:40.091][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.092][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.093][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:40.095][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:40.096][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.097][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.098][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:40.099][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:40.101][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.102][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.103][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.104][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.105][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.106][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.108][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:40.109][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:40.110][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.111][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.112][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:40.113][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:40.115][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.116][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.117][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:40.118][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:40.119][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.120][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.122][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:40.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:40.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:40.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:40.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:40.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:40.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:40.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.137][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:40.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:40.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.142][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:40.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:40.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.147][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:40.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:40.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:40.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:40.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:40.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:40.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:40.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:40.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.167][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:40.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:40.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.172][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:40.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:40.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.176][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:40.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:40.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:40.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:40.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:40.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:40.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:40.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:40.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:40.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:40.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:40.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:40.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:40.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:40.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:40.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:40.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:40.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:40.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:40.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:40.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.240][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:40.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:40.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.245][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:40.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:40.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.250][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:40.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:40.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:40.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:40.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.259][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:40.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:40.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.264][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:40.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:40.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.269][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:40.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:40.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.274][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:40.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:40.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.279][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:40.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:40.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.296][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2023-10-14 11:08:40.298][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:08:40.299][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:08:40.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:40.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:40.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:40.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:40.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:40.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:40.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:40.336][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:40.341][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:40.342][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2023-10-14 11:08:40.344][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:40.345][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2023-10-14 11:08:40.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:40.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:40.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:40.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:40.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:40.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:40.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:40.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:40.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:40.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:40.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:40.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:40.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:40.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:40.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:40.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:40.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:40.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:40.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:40.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:40.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:40.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:40.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:40.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:40.438][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:08:40.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:40.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:40.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:40.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:40.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:40.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:40.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:40.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:40.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:40.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:40.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:40.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.465][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:40.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:40.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.470][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:40.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:40.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:40.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:40.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:40.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:40.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.486][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:40.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:40.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.491][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:40.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:40.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:40.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:40.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:40.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:40.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:40.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:40.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:40.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:40.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.516][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:40.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:40.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.520][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:40.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:40.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:40.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:40.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:40.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:40.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.546][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:40.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:40.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.551][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:40.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:40.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.556][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:40.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:40.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.560][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:40.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:40.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.569][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:40.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:40.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:40.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:40.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.584][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:40.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:40.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.590][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:40.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:40.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.595][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:40.597][private$selectFields]
biodb.TRACE[2023-10-14 11:08:40.598][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:40.600][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:40.601][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:40.602][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:40.604][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:40.605][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.606][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.607][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:40.609][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:40.610][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.611][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.612][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:40.614][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:40.615][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.616][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.617][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:40.619][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:40.620][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.621][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.622][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:40.623][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:40.624][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.626][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.627][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:40.628][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:40.629][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.631][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.632][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:40.633][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:40.635][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.636][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.637][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:40.638][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:40.640][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.641][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.642][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.643][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.645][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.646][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.647][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:40.648][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:40.649][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.650][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.651][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:40.653][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:40.654][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.655][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.656][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:40.657][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:40.658][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.659][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.661][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:40.662][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:40.663][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.664][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.665][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:40.667][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:40.668][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.669][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.670][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:40.671][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:40.672][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.673][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.674][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:40.676][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:40.682][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.684][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.685][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:40.686][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:40.687][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.688][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.689][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:40.691][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:40.692][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.693][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.694][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:40.696][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:40.697][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.698][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.699][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:40.700][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:40.702][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.703][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.704][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:40.705][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:40.706][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.707][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.709][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.710][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.711][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.712][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.713][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:40.715][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:40.716][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.717][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.718][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:40.719][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:40.720][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.722][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.723][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:40.724][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:40.725][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.726][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.727][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:40.729][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:40.730][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.731][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.732][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:40.733][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:40.735][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:40.736][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:40.737][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.738][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.739][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:40.740][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:40.742][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.743][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.744][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:40.746][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:40.747][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.748][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.749][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:40.750][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:40.751][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.753][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.754][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:40.755][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:40.756][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.757][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.758][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:40.760][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:40.761][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.762][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.763][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:40.764][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:40.766][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.767][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.768][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:40.769][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:40.770][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.772][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.773][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.774][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.775][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.777][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.778][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:40.779][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:40.780][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.781][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.783][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:40.784][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:40.785][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.787][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.788][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:40.790][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:40.792][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.793][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.794][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:40.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:40.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:40.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:40.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:40.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:40.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:40.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.812][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:40.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:40.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.816][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:40.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:40.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.821][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:40.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:40.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:40.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:40.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:40.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:40.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:40.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:40.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.844][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:40.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:40.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.849][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:40.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:40.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.853][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:40.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:40.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:40.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:40.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:40.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:40.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:40.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:40.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.873][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:40.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:40.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:40.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:40.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.883][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:40.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:40.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.888][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:40.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:40.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.892][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:40.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:40.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.897][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:40.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:40.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:40.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:40.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:40.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:40.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:40.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:40.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:40.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.932][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:40.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:40.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.937][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:40.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:40.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.942][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:40.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:40.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.947][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:40.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:40.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.952][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:40.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:40.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.958][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:40.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:40.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.963][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:40.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:40.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.968][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:40.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:40.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.972][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:40.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:40.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:40.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:40.985][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2023-10-14 11:08:40.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:40.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:40.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:40.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:40.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:40.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:41.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:41.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:41.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:41.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:41.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:41.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.012][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:41.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:41.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.017][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:41.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:41.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.032][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:41.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:41.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.043][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:41.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:41.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.066][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:41.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:41.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:41.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:41.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.088][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:41.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:41.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.093][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:41.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:41.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.117][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.122][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.127][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:41.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:41.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.132][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:41.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:41.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.137][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:41.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:41.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.142][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:41.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:41.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.147][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:41.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:41.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.152][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:41.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:41.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.158][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:41.159][private$selectFields]
biodb.TRACE[2023-10-14 11:08:41.160][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:41.161][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:41.163][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:41.164][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:41.165][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:41.167][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.168][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.169][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:41.170][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:41.172][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.173][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.174][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.175][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.176][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.178][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.179][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:41.180][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:41.181][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.183][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.184][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:41.185][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:41.187][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.188][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.189][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.190][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.192][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.193][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.194][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:41.195][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:41.196][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.198][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.199][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.200][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.201][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.202][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.204][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.205][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.206][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.207][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.208][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.210][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.211][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.212][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.213][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:41.215][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:41.216][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.217][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.218][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:41.220][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:41.221][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.222][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.223][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:41.224][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:41.226][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.227][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.228][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:41.230][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:41.231][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.232][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.233][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:41.234][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:41.236][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.237][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.238][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.239][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.241][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.242][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.243][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:41.244][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:41.245][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.247][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.248][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:41.249][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:41.250][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.252][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.253][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.254][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.255][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.257][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.258][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:41.259][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:41.260][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.261][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.263][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.264][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.265][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.266][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.268][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.269][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.270][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.271][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.272][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.274][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.275][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.276][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.277][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:41.278][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:41.280][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.281][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.282][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:41.283][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:41.284][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.286][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.287][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:41.288][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:41.289][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.290][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.292][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:41.293][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:41.294][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:41.295][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:41.297][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.298][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.299][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:41.300][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:41.301][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.302][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.304][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.305][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.306][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.307][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.308][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:41.310][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:41.311][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.312][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.313][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:41.314][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:41.316][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.317][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.318][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.319][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.320][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.321][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.323][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.324][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.325][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.326][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.328][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.329][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.330][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.331][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.332][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.334][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.335][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.336][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.337][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:41.338][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:41.339][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.341][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.342][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:41.343][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:41.344][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.345][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.346][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:41.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:41.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:41.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:41.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:41.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:41.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:41.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.362][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:41.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:41.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.367][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:41.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:41.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.372][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:41.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:41.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.391][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:41.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:41.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.396][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:41.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:41.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.401][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:41.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:41.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:41.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:41.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:41.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:41.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:41.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:41.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.436][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.473][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.478][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.483][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.488][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:41.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:41.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.493][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:41.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:41.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.498][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:41.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:41.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.503][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:41.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:41.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.508][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:41.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:41.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.513][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:41.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:41.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.524][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2023-10-14 11:08:41.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:41.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:41.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:41.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:41.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:41.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:41.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:41.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:41.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:41.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:41.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:41.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.549][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:41.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:41.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.554][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:41.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:41.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.569][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:41.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:41.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.573][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:41.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:41.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:41.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:41.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:41.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:41.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.598][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:41.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:41.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.603][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:41.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:41.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.628][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.633][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.638][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:41.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:41.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.643][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:41.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:41.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.648][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:41.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:41.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.653][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:41.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:41.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.657][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:41.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:41.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.662][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:41.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:41.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.667][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:41.668][private$selectFields]
biodb.TRACE[2023-10-14 11:08:41.669][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:41.671][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:41.672][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:41.673][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:41.674][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:41.675][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.676][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.678][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:41.679][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:41.680][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.681][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.682][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.684][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.685][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.686][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.687][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:41.688][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:41.689][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.691][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.692][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:41.693][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:41.694][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.695][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.696][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.698][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.699][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.700][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.701][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:41.702][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:41.703][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.705][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.706][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.707][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.708][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.709][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.710][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.712][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.713][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.714][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.715][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.716][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.718][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.719][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.720][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:41.721][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:41.722][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.723][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.725][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:41.726][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:41.727][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.728][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.729][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:41.731][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:41.732][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.733][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.734][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:41.735][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:41.737][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.738][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.739][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:41.740][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:41.741][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.742][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.744][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.745][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.746][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.747][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.748][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:41.750][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:41.751][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.752][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.753][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:41.754][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:41.756][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.757][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.758][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.759][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.760][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.761][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.763][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:41.764][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:41.765][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.766][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.768][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.774][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.775][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.777][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.778][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.779][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.780][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.781][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.783][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.784][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.785][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.786][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.787][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:41.789][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:41.790][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.791][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.792][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:41.793][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:41.794][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.796][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.797][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:41.798][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:41.799][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.800][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.801][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:41.803][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:41.804][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:41.805][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:41.806][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.807][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.809][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:41.810][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:41.811][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.812][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.813][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.815][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.816][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.817][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.818][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:41.820][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:41.821][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.822][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.823][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:41.824][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:41.825][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.826][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.828][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.829][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.830][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.831][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.832][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.833][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.852][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.853][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.854][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.855][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.856][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.857][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.859][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.860][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.861][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.862][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.863][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:41.864][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:41.865][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.866][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.868][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:41.869][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:41.870][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.871][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.872][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:41.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:41.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:41.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:41.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:41.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:41.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:41.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.887][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:41.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:41.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.892][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:41.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:41.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.896][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:41.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:41.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:41.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.915][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:41.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:41.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.921][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:41.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:41.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.925][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:41.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:41.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:41.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:41.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:41.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:41.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.942][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:41.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:41.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:41.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:41.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:41.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.989][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.994][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:41.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:41.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:41.999][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:42.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:42.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.003][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:42.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:42.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.008][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:42.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:42.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.013][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:42.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:42.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.017][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:42.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:42.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.022][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:42.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:42.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.027][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:42.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:42.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.038][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2023-10-14 11:08:42.039][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:08:42.040][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-10-14 11:08:42.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:42.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:42.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:42.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:42.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:42.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:42.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-10-14 11:08:42.059][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-10-14 11:08:42.063][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-10-14 11:08:42.065][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2023-10-14 11:08:42.067][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-10-14 11:08:42.068][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2023-10-14 11:08:42.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:42.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:42.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:42.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:42.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:42.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:42.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:42.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:42.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:42.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:42.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:42.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:42.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:42.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:42.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:42.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:42.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:42.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:42.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:42.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:42.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:42.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:42.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:42.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-10-14 11:08:42.161][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-10-14 11:08:42.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:42.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:42.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:42.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:42.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:42.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:42.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:42.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:42.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:42.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:42.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:42.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.186][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:42.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:42.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.190][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:42.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:42.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:42.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:42.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:42.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:42.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.204][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:42.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:42.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.209][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:42.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:42.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.213][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:42.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:42.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:42.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:42.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:42.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:42.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:42.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:42.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.232][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:42.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:42.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.237][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:42.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:42.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:42.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:42.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:42.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:42.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.261][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:42.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:42.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.265][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:42.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:42.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.270][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:42.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:42.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.275][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:42.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:42.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.279][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:42.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:42.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.284][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:42.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:42.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.289][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:42.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:42.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.293][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:42.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:42.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.298][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:42.299][private$selectFields]
biodb.TRACE[2023-10-14 11:08:42.300][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:42.301][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:42.302][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:42.303][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:42.305][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:42.306][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.307][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.308][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:42.309][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:42.310][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.311][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.312][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:42.314][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:42.315][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.316][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.317][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:42.318][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:42.319][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.320][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.322][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:42.323][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:42.324][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.325][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.326][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:42.327][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:42.329][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.330][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.331][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:42.332][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:42.333][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.334][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.335][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:42.337][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:42.338][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.339][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.340][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.341][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.342][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.343][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.345][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:42.346][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:42.347][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.348][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.349][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:42.350][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:42.352][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.353][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.354][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:42.355][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:42.356][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.357][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.358][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:42.360][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:42.361][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.362][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.363][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:42.364][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:42.366][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.367][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.368][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:42.369][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:42.370][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.371][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.372][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:42.374][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:42.375][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.376][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.377][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:42.378][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:42.379][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.381][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.382][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:42.383][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:42.384][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.385][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.386][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:42.388][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:42.389][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.390][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.391][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:42.393][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:42.394][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.395][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.396][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:42.397][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:42.398][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.400][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.401][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.402][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.403][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.404][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.405][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:42.407][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:42.408][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.409][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.410][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:42.411][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:42.412][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.413][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.415][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:42.416][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:42.417][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.418][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.419][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:42.420][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:42.422][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.423][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.424][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:42.425][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:42.426][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:42.427][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:42.429][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.430][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.431][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:42.432][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:42.433][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.434][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.435][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:42.437][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:42.438][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.439][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.440][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:42.441][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:42.442][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.444][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.445][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:42.446][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:42.447][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.448][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.449][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:42.450][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:42.452][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.453][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.454][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:42.455][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:42.456][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.457][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.458][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:42.460][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:42.461][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.462][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.463][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.464][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.465][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.472][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.473][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:42.475][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:42.476][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.477][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.478][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:42.479][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:42.480][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.482][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.483][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:42.484][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:42.485][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.486][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.487][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:42.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:42.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:42.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:42.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:42.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:42.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:42.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.503][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:42.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:42.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.508][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:42.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:42.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.512][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:42.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:42.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:42.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:42.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:42.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:42.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:42.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:42.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.531][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:42.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:42.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.536][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:42.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:42.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.541][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:42.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:42.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.545][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:42.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:42.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:42.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:42.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:42.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:42.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:42.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:42.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:42.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:42.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:42.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:42.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.573][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:42.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:42.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.578][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:42.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:42.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.583][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:42.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:42.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:42.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:42.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:42.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:42.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:42.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:42.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.617][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:42.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:42.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.622][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:42.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:42.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.627][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:42.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:42.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.632][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:42.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:42.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.637][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:42.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:42.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.642][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:42.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:42.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.664][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:42.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:42.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.669][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:42.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:42.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.675][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:42.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:42.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.687][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2023-10-14 11:08:42.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:42.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:42.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:42.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:42.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:42.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:42.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:42.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:42.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:42.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:42.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:42.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.713][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:42.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:42.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.718][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:42.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:42.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:42.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:42.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:42.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:42.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.733][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:42.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:42.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.739][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:42.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:42.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:42.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:42.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:42.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:42.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.754][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:42.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:42.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.760][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:42.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:42.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.765][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:42.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:42.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.770][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:42.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:42.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:42.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:42.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:42.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:42.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.794][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:42.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:42.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.799][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:42.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:42.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.804][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:42.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:42.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.808][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:42.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:42.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.813][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:42.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:42.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.818][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:42.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:42.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.823][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:42.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:42.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.827][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:42.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:42.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.832][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:42.833][private$selectFields]
biodb.TRACE[2023-10-14 11:08:42.834][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:42.841][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:42.842][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:42.844][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:42.845][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:42.846][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.847][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.848][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:42.850][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:42.851][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.852][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.853][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:42.854][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:42.856][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.857][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.858][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:42.859][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:42.860][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.861][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.863][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:42.864][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:42.865][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.866][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.867][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:42.869][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:42.870][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.871][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.872][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:42.873][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:42.875][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.876][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.877][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:42.878][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:42.879][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.881][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.882][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.883][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.884][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.885][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.886][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:42.888][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:42.889][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.890][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.891][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:42.892][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:42.893][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.894][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.896][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:42.897][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:42.898][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.899][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.900][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:42.902][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:42.903][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.905][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.906][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:42.907][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:42.908][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.910][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.911][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:42.912][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:42.914][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.915][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.916][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:42.917][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:42.918][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.919][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.921][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:42.922][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:42.923][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.924][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.926][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:42.927][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:42.928][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.929][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.930][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:42.932][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:42.933][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.934][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.935][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:42.936][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:42.938][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.939][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.940][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:42.941][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:42.942][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.943][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.945][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.946][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:42.947][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.949][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.950][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:42.951][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:42.952][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.953][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.955][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:42.956][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:42.957][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.958][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.959][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:42.961][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:42.962][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.963][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.964][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:42.965][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:42.966][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.967][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.969][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:42.970][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:42.971][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:42.972][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:42.973][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.974][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.975][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:42.977][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:42.978][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.979][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.980][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:42.981][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:42.982][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.983][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.984][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:42.986][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:42.987][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.988][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.989][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:42.990][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:42.991][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.992][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.993][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:42.995][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:42.996][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:42.997][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:42.998][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:42.999][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:43.000][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.001][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.003][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:43.004][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:43.005][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.006][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.007][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:43.008][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:43.009][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.010][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.012][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:43.013][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:43.014][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.015][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.016][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:43.017][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:43.018][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.019][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.021][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:43.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:43.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:43.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:43.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:43.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:43.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:43.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.036][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:43.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:43.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.040][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:43.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:43.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.045][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:43.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:43.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:43.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:43.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:43.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:43.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:43.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:43.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.064][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:43.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:43.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.069][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:43.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:43.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.074][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:43.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:43.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:43.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:43.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:43.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:43.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:43.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:43.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:43.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:43.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.098][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:43.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:43.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.103][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:43.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:43.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:43.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:43.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:43.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:43.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:43.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:43.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:43.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:43.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:43.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:43.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:43.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:43.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.136][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:43.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:43.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.141][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:43.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:43.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.146][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:43.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:43.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.151][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:43.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:43.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:43.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:43.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.160][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:43.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:43.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.165][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:43.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:43.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.170][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:43.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:43.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.174][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:43.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:43.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.192][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2023-10-14 11:08:43.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-10-14 11:08:43.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:43.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:43.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:43.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:43.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:43.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-10-14 11:08:43.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:43.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:43.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:43.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:43.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.217][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:43.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:43.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.221][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:43.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:43.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:43.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:43.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:43.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:43.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.235][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:43.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:43.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.240][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:43.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:43.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:43.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:43.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:43.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:43.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:43.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:43.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:43.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:43.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.263][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:43.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:43.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.268][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:43.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:43.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:43.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:43.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:43.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:43.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:43.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:43.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:43.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:43.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.292][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:43.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:43.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.297][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:43.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:43.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.301][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:43.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:43.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:43.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:43.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.311][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:43.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:43.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.315][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:43.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:43.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.320][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:43.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:43.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.325][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:43.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:43.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.329][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:43.330][private$selectFields]
biodb.TRACE[2023-10-14 11:08:43.332][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-10-14 11:08:43.333][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-10-14 11:08:43.334][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2023-10-14 11:08:43.335][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:43.336][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:43.337][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.338][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.339][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:43.341][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:43.342][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.343][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.344][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:43.345][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:43.346][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.348][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.349][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:43.350][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:43.351][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.352][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.371][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:43.373][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:43.374][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.375][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.376][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:43.377][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:43.378][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.379][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.381][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:43.382][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:43.383][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.384][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.385][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:43.387][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:43.388][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.389][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.390][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:43.391][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:43.392][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.393][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.395][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:43.396][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:43.397][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.398][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.399][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:43.401][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:43.402][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.403][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.404][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:43.405][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:43.406][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.408][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.409][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:43.410][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:43.411][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.412][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.414][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:43.415][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:43.416][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.417][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.418][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:43.420][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:43.421][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.422][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.423][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:43.424][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:43.426][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.427][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.429][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:43.430][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:43.432][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.433][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.434][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:43.435][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:43.437][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.438][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.440][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:43.441][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:43.442][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.444][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.445][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:43.446][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-10-14 11:08:43.447][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.449][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.450][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:43.451][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:43.453][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.454][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.455][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:43.456][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:43.457][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.458][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.461][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:43.462][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:43.463][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.464][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.466][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:43.467][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:43.468][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.469][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.470][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:43.472][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:43.473][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.474][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.475][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-10-14 11:08:43.476][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-10-14 11:08:43.477][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.479][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.480][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:43.481][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2023-10-14 11:08:43.482][ef$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:43.483][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:43.485][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.486][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.487][ef$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:43.488][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:43.489][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.490][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.492][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:43.493][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:43.494][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.495][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.496][ef$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:43.497][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:43.499][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.500][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.501][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:43.502][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:43.503][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.504][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.506][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:43.507][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:43.508][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.509][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.510][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:43.512][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:43.513][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.514][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.515][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:43.516][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:43.518][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.519][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.520][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:43.521][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:43.522][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.523][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.525][ef$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:43.526][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:43.527][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.528][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.529][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:43.530][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:43.532][ef$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.533][ef$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.534][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2023-10-14 11:08:43.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:43.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:43.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:43.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:43.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-10-14 11:08:43.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-10-14 11:08:43.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.556][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:43.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:43.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.561][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:43.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:43.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.565][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-10-14 11:08:43.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-10-14 11:08:43.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:43.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:43.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:43.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:43.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-10-14 11:08:43.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-10-14 11:08:43.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.585][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:43.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:43.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.589][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:43.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:43.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.594][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-10-14 11:08:43.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-10-14 11:08:43.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:43.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:43.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:43.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:43.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-10-14 11:08:43.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-10-14 11:08:43.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:43.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:43.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:43.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:43.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-10-14 11:08:43.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-10-14 11:08:43.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:43.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:43.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:43.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:43.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:43.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-10-14 11:08:43.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:43.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:43.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:43.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:43.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:43.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-10-14 11:08:43.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.657][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:43.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:43.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.662][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:43.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:43.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.667][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-10-14 11:08:43.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-10-14 11:08:43.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.671][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:43.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:43.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.676][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:43.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:43.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.681][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-10-14 11:08:43.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-10-14 11:08:43.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:43.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:43.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.690][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:43.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:43.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.694][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-10-14 11:08:43.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-10-14 11:08:43.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.706][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2023-10-14 11:08:43.707][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-10-14 11:08:43.708][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-10-14 11:08:43.715][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-10-14 11:08:43.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-10-14 11:08:43.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.720][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-10-14 11:08:43.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-10-14 11:08:43.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-10-14 11:08:43.725][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-10-14 11:08:43.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-10-14 11:08:43.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-10-14 11:08:43.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-10-14 11:08:43.733][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-10-14 11:08:43.735][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2023-10-14 11:08:43.736][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2023-10-14 11:08:43.737][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-10-14 11:08:43.738][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-10-14 11:08:43.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-10-14 11:08:43.740][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-10-14 11:08:43.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-10-14 11:08:43.742][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-10-14 11:08:43.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1360 ]
> 
> proc.time()
   user  system elapsed 
 87.957   3.293 311.238

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.6.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.17-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-apple-darwin20 (64-bit)
* R was compiled by
    Apple clang version 14.0.3 (clang-1403.0.22.14.1)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.6.4
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: OK

Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package ‘biodbChebi’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)