############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r mbOmic -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data mbOmic ### ############################################################################## ############################################################################## * checking for file 'mbOmic/DESCRIPTION' ... OK * preparing 'mbOmic': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'Integrative_analysis_of_metabolome_and_microbiome.Rmd' using rmarkdown --- finished re-building 'Integrative_analysis_of_metabolome_and_microbiome.Rmd' --- re-building 'enterotyping.Rmd' using rmarkdown Quitting from lines 29-34 [unnamed-chunk-2] (enterotyping.Rmd) Error: processing vignette 'enterotyping.Rmd' failed with diagnostics: cannot open the connection to 'http://enterotypes.org/ref_samples_abundance_MetaHIT.txt' --- failed re-building 'enterotyping.Rmd' SUMMARY: processing the following file failed: 'enterotyping.Rmd' Error: Vignette re-building failed. Execution halted