############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data maanova ### ############################################################################## ############################################################################## * checking for file ‘maanova/DESCRIPTION’ ... OK * preparing ‘maanova’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes ----------------------------------- * installing *source* package ‘maanova’ ... ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c makeratio.c -o makeratio.o gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c masvd.c -o masvd.o In file included from /home/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:40, from masvd.h:1, from masvd.c:17: masvd.h:14:15: error: conflicting types for ‘dgesvd_’; have ‘void(const char *, const char *, const int *, const int *, double *, const int *, double *, double *, const int *, double *, const int *, double *, const int *, int *)’ 14 | void F77_NAME(dgesvd)(const char *jobu, const char *jobvt, | ^~~~~~ /home/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro ‘F77_CALL’ 77 | # define F77_CALL(x) x ## _ | ^ masvd.h:14:6: note: in expansion of macro ‘F77_NAME’ 14 | void F77_NAME(dgesvd)(const char *jobu, const char *jobvt, | ^~~~~~~~ /home/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:348:10: note: previous declaration of ‘dgesvd_’ with type ‘void(const char *, const char *, const int *, const int *, double *, const int *, double *, double *, const int *, double *, const int *, double *, const int *, int *, size_t, size_t)’ {aka ‘void(const char *, const char *, const int *, const int *, double *, const int *, double *, double *, const int *, double *, const int *, double *, const int *, int *, long unsigned int, long unsigned int)’} 348 | F77_NAME(dgesvd)(const char* jobu, const char* jobvt, const int* m, | ^~~~~~ /home/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro ‘F77_CALL’ 77 | # define F77_CALL(x) x ## _ | ^ /home/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:348:1: note: in expansion of macro ‘F77_NAME’ 348 | F77_NAME(dgesvd)(const char* jobu, const char* jobvt, const int* m, | ^~~~~~~~ masvd.c: In function ‘masvd’: masvd.c:68:18: error: too few arguments to function ‘dgesdd_’ 68 | F77_CALL(dgesdd)(CHAR(STRING_ELT(jobu, 0)), | ^~~~~~ /home/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro ‘F77_CALL’ 77 | # define F77_CALL(x) x ## _ | ^ /home/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:2404:10: note: declared here 2404 | F77_NAME(dgesdd)(const char* jobz, | ^~~~~~ /home/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro ‘F77_CALL’ 77 | # define F77_CALL(x) x ## _ | ^ /home/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:2404:1: note: in expansion of macro ‘F77_NAME’ 2404 | F77_NAME(dgesdd)(const char* jobz, | ^~~~~~~~ masvd.c:77:18: error: too few arguments to function ‘dgesdd_’ 77 | F77_CALL(dgesdd)(CHAR(STRING_ELT(jobu, 0)), | ^~~~~~ masvd.c:77:9: note: in expansion of macro ‘F77_CALL’ 77 | F77_CALL(dgesdd)(CHAR(STRING_ELT(jobu, 0)), | ^~~~~~~~ /home/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:2404:10: note: declared here 2404 | F77_NAME(dgesdd)(const char* jobz, | ^~~~~~ /home/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro ‘F77_CALL’ 77 | # define F77_CALL(x) x ## _ | ^ /home/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:2404:1: note: in expansion of macro ‘F77_NAME’ 2404 | F77_NAME(dgesdd)(const char* jobz, | ^~~~~~~~ masvd.c: At top level: masvd.c:114:9: warning: "/*" within comment [-Wcomment] 114 | /* work on a copy of x */ | masvd.c:154:1: warning: "/*" within comment [-Wcomment] 154 | /*#ifndef IEEE_754 | masvd.c:161:5: warning: "/*" within comment [-Wcomment] 161 | /* work on a copy of x */ | masvd.c:165:9: warning: "/*" within comment [-Wcomment] 165 | /* ask for optimal size of work array */ | masvd.c:189:9: warning: "/*" within comment [-Wcomment] 189 | /* ask for optimal size of work array */ | make: *** [/home/biocbuild/bbs-3.17-bioc/R/etc/Makeconf:191: masvd.o] Error 1 ERROR: compilation failed for package ‘maanova’ * removing ‘/tmp/RtmpBFoolq/Rinst1dd29b186fe004/maanova’ ----------------------------------- ERROR: package installation failed