############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf Harman.buildbin-libdir && mkdir Harman.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=Harman.buildbin-libdir Harman_1.28.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'Harman' ... ** using staged installation ** libs using C++ compiler: 'G__~1.EXE (GCC) 12.2.0' g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D_ARRAYALIGNEMT=4 -D_USE_RCPP=1 -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -I"F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include" -std=c++0x -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Harman.cpp -o Harman.o Harman.cpp: In function 'SEXPREC* HarmanMain(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': Harman.cpp:3008:3: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 3008 | else | ^~~~ Harman.cpp:3022:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 3022 | std::vector tr_std_tmp = Rcpp::as >(tr) ; | ^~~ In file included from Harman.cpp:182: CSelectRandom.h: In instantiation of 'std::vector* CSelectRandom::ReturnVectOf32bitIntegersInRange_CSTDLIB(size_t, size_t, size_t, size_t) [with T = double; size_t = long long unsigned int]': Harman.cpp:1764:79: required from here CSelectRandom.h:943:48: warning: comparison of integer expressions of different signedness: 'long long int' and 'size_t' {aka 'long long unsigned int'} [-Wsign-compare] 943 | while (currval < howManyIN) | ~~~~~~~~^~~~~~~~~~~ g++ -std=gnu++17 -shared -s -static-libgcc -o Harman.dll tmp.def Harman.o -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.17-bioc/meat/Harman.buildbin-libdir/00LOCK-Harman/00new/Harman/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'Harman' as Harman_1.28.0.zip * DONE (Harman)