############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data EWCE ### ############################################################################## ############################################################################## * checking for file ‘EWCE/DESCRIPTION’ ... OK * preparing ‘EWCE’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘EWCE.Rmd’ using rmarkdown -- mouse -- human [WARNING] Could not parse YAML metadata at line 19 column 1: :10:28: Unexpected ' ' pandoc-citeproc: reference skene_2016 not found [WARNING] This document format requires a nonempty element. Please specify either 'title' or 'pagetitle' in the metadata, e.g. by using --metadata pagetitle="..." on the command line. Falling back to 'EWCE.knit' --- finished re-building ‘EWCE.Rmd’ --- re-building ‘extended.Rmd’ using rmarkdown Quitting from lines 100-116 [unnamed-chunk-3] (extended.Rmd) Error: processing vignette 'extended.Rmd' failed with diagnostics: failed to load resource name: EH5367 title: mouse_to_human_homologs reason: error in evaluating the argument 'x' in selecting a method for function 'get': bad restore file magic number (file may be corrupted) -- no data loaded --- failed re-building ‘extended.Rmd’ SUMMARY: processing the following file failed: ‘extended.Rmd’ Error: Vignette re-building failed. Execution halted