############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL DifferentialRegulation ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘DifferentialRegulation’ ... ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ using C++11 g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -c Rcpp_MCMC.cpp -o Rcpp_MCMC.o Rcpp_MCMC.cpp: In function ‘Rcpp::NumericVector Rcpp_MCMC(const unsigned int&, const unsigned int&, const unsigned int&, const unsigned int&, const IntegerVector&, const IntegerVector&, const Rcpp::ListOf >&, const IntegerVector&, const unsigned int&, const unsigned int&, Rcpp::NumericMatrix&, Rcpp::ListOf >&, const NumericMatrix&, const Rcpp::ListOf > >&, const Rcpp::ListOf >&, Rcpp::ListOf >&, Rcpp::ListOf >&, Rcpp::ListOf >&, Rcpp::ListOf >&, const NumericVector&, const NumericVector&, const IntegerVector&, Rcpp::ListOf >&, const IntegerVector&, const double&)’: Rcpp_MCMC.cpp:305:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const type’ {aka ‘const int’} [-Wsign-compare] 305 | for(sample = 0; sample < n_samples_per_group[ gr ]; sample ++){ Rcpp_MCMC.cpp:135:10: warning: unused variable ‘tmp_1’ [-Wunused-variable] 135 | double tmp_1, tmp_2, tmp_3; | ^~~~~ Rcpp_MCMC.cpp:135:17: warning: unused variable ‘tmp_2’ [-Wunused-variable] 135 | double tmp_1, tmp_2, tmp_3; | ^~~~~ Rcpp_MCMC.cpp:135:24: warning: unused variable ‘tmp_3’ [-Wunused-variable] 135 | double tmp_1, tmp_2, tmp_3; | ^~~~~ Rcpp_MCMC.cpp:394:10: warning: ‘ll_original’ may be used uninitialized in this function [-Wmaybe-uninitialized] 394 | ll += ll_original; | ~~~^~~~~~~~~~~~~~ g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -c Rcpp_MCMC_EC_US.cpp -o Rcpp_MCMC_EC_US.o Rcpp_MCMC_EC_US.cpp: In function ‘Rcpp::NumericVector Rcpp_MCMC_EC_US(const unsigned int&, const unsigned int&, const unsigned int&, const unsigned int&, const IntegerVector&, const IntegerVector&, const Rcpp::ListOf >&, const IntegerVector&, const unsigned int&, const unsigned int&, Rcpp::NumericMatrix&, Rcpp::ListOf >&, const NumericMatrix&, const Rcpp::ListOf > >&, const Rcpp::ListOf >&, Rcpp::ListOf >&, Rcpp::ListOf >&, Rcpp::ListOf >&, const NumericVector&, const NumericVector&, const IntegerVector&, const IntegerVector&, const NumericVector&, const NumericVector&, const double&)’: Rcpp_MCMC_EC_US.cpp:310:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const type’ {aka ‘const int’} [-Wsign-compare] 310 | for(sample = 0; sample < n_samples_per_group[ gr ]; sample ++){ Rcpp_MCMC_EC_US.cpp:130:10: warning: unused variable ‘tmp_1’ [-Wunused-variable] 130 | double tmp_1, tmp_2, tmp; | ^~~~~ Rcpp_MCMC_EC_US.cpp:130:17: warning: unused variable ‘tmp_2’ [-Wunused-variable] 130 | double tmp_1, tmp_2, tmp; | ^~~~~ Rcpp_MCMC_EC_US.cpp:399:12: warning: ‘ll_original’ may be used uninitialized in this function [-Wmaybe-uninitialized] 399 | ll += ll_original; | ~~~^~~~~~~~~~~~~~ g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o DifferentialRegulation.so RcppExports.o Rcpp_MCMC.o Rcpp_MCMC_EC_US.o -llapack -L/home/biocbuild/bbs-3.17-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.17-bioc/R/site-library/00LOCK-DifferentialRegulation/00new/DifferentialRegulation/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DifferentialRegulation)