############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data TCGAWorkflow ### ############################################################################## ############################################################################## * checking for file ‘TCGAWorkflow/DESCRIPTION’ ... OK * preparing ‘TCGAWorkflow’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘TCGAWorkflow.Rmd’ using rmarkdown 2023-04-11 11:09:16.575 R[39504:1017075628] XType: com.apple.fonts is not accessible. 2023-04-11 11:09:16.575 R[39504:1017075628] XType: XTFontStaticRegistry is enabled. Quitting from lines 1694-1695 (TCGAWorkflow.Rmd) Error: processing vignette 'TCGAWorkflow.Rmd' failed with diagnostics: argument "xlim" is missing, with no default --- failed re-building ‘TCGAWorkflow.Rmd’ SUMMARY: processing the following file failed: ‘TCGAWorkflow.Rmd’ Error: Vignette re-building failed. Execution halted