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This page was generated on 2023-04-11 14:50:27 -0400 (Tue, 11 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for optimalFlowData on nebbiolo2


To the developers/maintainers of the optimalFlowData package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 270/416HostnameOS / ArchINSTALLBUILDCHECK
optimalFlowData 1.10.0  (landing page)
Hristo Inouzhe
Snapshot Date: 2023-04-11 07:30:01 -0400 (Tue, 11 Apr 2023)
git_url: https://git.bioconductor.org/packages/optimalFlowData
git_branch: RELEASE_3_16
git_last_commit: 6cd822d
git_last_commit_date: 2022-11-01 11:23:29 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

Summary

Package: optimalFlowData
Version: 1.10.0
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings optimalFlowData_1.10.0.tar.gz
StartedAt: 2023-04-11 12:07:55 -0400 (Tue, 11 Apr 2023)
EndedAt: 2023-04-11 12:08:49 -0400 (Tue, 11 Apr 2023)
EllapsedTime: 54.3 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: optimalFlowData.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings optimalFlowData_1.10.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/optimalFlowData.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘optimalFlowData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘optimalFlowData’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘optimalFlowData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 101.0Mb
  sub-directories of 1Mb or more:
    data  100.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
  LazyData DB of 100.8 MB without LazyDataCompression set
  See §1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘optimalFlowData_vignette.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.16-data-experiment/meat/optimalFlowData.Rcheck/00check.log’
for details.



Installation output

optimalFlowData.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL optimalFlowData
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’
* installing *source* package ‘optimalFlowData’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (optimalFlowData)

Tests output


Example timings

optimalFlowData.Rcheck/optimalFlowData-Ex.timings

nameusersystemelapsed
Cytometry10.0230.0160.039
Cytometry100.0160.0160.032
Cytometry110.0290.0040.032
Cytometry120.0240.0080.032
Cytometry130.0240.0120.036
Cytometry140.0230.0230.046
Cytometry150.0130.0050.017
Cytometry160.0140.0030.017
Cytometry170.0690.0040.073
Cytometry180.0480.0160.065
Cytometry190.0270.0030.030
Cytometry20.0510.0080.059
Cytometry200.0450.0040.049
Cytometry210.0590.0040.062
Cytometry220.0290.0000.029
Cytometry230.0240.0000.024
Cytometry240.0270.0010.026
Cytometry250.0250.0000.024
Cytometry260.0260.0000.026
Cytometry270.0720.0070.079
Cytometry280.0640.0200.084
Cytometry290.0780.0090.086
Cytometry30.0160.0000.016
Cytometry300.0620.0110.074
Cytometry310.0550.0040.059
Cytometry320.0640.0000.064
Cytometry330.0340.0010.034
Cytometry340.1030.0040.107
Cytometry350.0520.0000.052
Cytometry360.0160.0000.015
Cytometry370.0100.0030.014
Cytometry380.0130.0010.014
Cytometry390.0140.0000.014
Cytometry40.0160.0000.016
Cytometry400.0370.0000.037
Cytometry50.0160.0000.016
Cytometry60.0140.0000.015
Cytometry70.0110.0030.015
Cytometry80.0160.0000.016
Cytometry90.0260.0010.027
buildDatabase0.5220.0400.562
cytometry.diagnosis0.0020.0000.001
noise.types0.0010.0000.001