############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:gcspikelite.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings gcspikelite_1.36.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/gcspikelite.Rcheck’ * using R version 4.2.3 (2023-03-15) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * checking for file ‘gcspikelite/DESCRIPTION’ ... OK * this is package ‘gcspikelite’ version ‘1.36.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘gcspikelite’ can be installed ... OK * checking installed package size ... NOTE installed size is 67.7Mb sub-directories of 1Mb or more: data 67.6Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... WARNING Files not of a type allowed in a ‘data’ directory: ‘0709_468.CDF’ ‘0709_468.ELU’ ‘0709_470.CDF’ ‘0709_470.ELU’ ‘0709_471.CDF’ ‘0709_471.ELU’ ‘0709_474.CDF’ ‘0709_474.ELU’ ‘0709_475.CDF’ ‘0709_475.ELU’ ‘0709_479.CDF’ ‘0709_479.ELU’ ‘0709_485.CDF’ ‘0709_485.ELU’ ‘0709_493.CDF’ ‘0709_493.ELU’ ‘0709_496.CDF’ ‘0709_496.ELU’ ‘chromaTOFex.tof’ Please use e.g. ‘inst/extdata’ for non-R data files * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... NONE * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 2 NOTEs See ‘/home/biocbuild/bbs-3.16-data-experiment/meat/gcspikelite.Rcheck/00check.log’ for details.