Back to Build/check report for BioC 3.16 experimental data
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This page was generated on 2023-04-11 14:50:26 -0400 (Tue, 11 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for aracne.networks on nebbiolo2


To the developers/maintainers of the aracne.networks package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 16/416HostnameOS / ArchINSTALLBUILDCHECK
aracne.networks 1.24.0  (landing page)
Federico M. Giorgi , Mariano Alvarez
Snapshot Date: 2023-04-11 07:30:01 -0400 (Tue, 11 Apr 2023)
git_url: https://git.bioconductor.org/packages/aracne.networks
git_branch: RELEASE_3_16
git_last_commit: 28d1fd2
git_last_commit_date: 2022-11-01 11:14:28 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

Summary

Package: aracne.networks
Version: 1.24.0
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:aracne.networks.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings aracne.networks_1.24.0.tar.gz
StartedAt: 2023-04-11 11:27:59 -0400 (Tue, 11 Apr 2023)
EndedAt: 2023-04-11 11:35:39 -0400 (Tue, 11 Apr 2023)
EllapsedTime: 459.4 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: aracne.networks.Rcheck
Warnings: 2

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:aracne.networks.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings aracne.networks_1.24.0.tar.gz
###
##############################################################################
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* using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/aracne.networks.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘aracne.networks/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘aracne.networks’ version ‘1.24.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘aracne.networks’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 203.3Mb
  sub-directories of 1Mb or more:
    data  203.1Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
  LazyData DB of 203.1 MB without LazyDataCompression set
  See §1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                  old_size new_size compress
  regulonblca.rda    8.2Mb    6.9Mb       xz
  regulonbrca.rda    5.7Mb    4.7Mb       xz
  reguloncesc.rda    9.6Mb    8.0Mb       xz
  reguloncoad.rda    7.0Mb    5.8Mb       xz
  regulonesca.rda    8.7Mb    7.0Mb       xz
  regulongbm.rda     9.2Mb    7.1Mb       xz
  regulonhnsc.rda    7.2Mb    6.0Mb       xz
  regulonkirc.rda    5.9Mb    4.9Mb       xz
  regulonkirp.rda    7.8Mb    6.5Mb       xz
  regulonlaml.rda    8.8Mb    7.0Mb       xz
  regulonlihc.rda    8.0Mb    6.7Mb       xz
  regulonluad.rda    6.8Mb    5.7Mb       xz
  regulonlusc.rda    7.7Mb    6.5Mb       xz
  regulonnet.rda    12.1Mb   10.1Mb       xz
  regulonov.rda     10.5Mb    8.6Mb       xz
  regulonpaad.rda    8.7Mb    7.1Mb       xz
  regulonpcpg.rda    9.9Mb    7.8Mb       xz
  regulonprad.rda    5.6Mb    4.7Mb       xz
  regulonread.rda    9.4Mb    7.6Mb       xz
  regulonsarc.rda    8.8Mb    7.2Mb       xz
  regulonstad.rda    9.7Mb    8.1Mb       xz
  regulontgct.rda    7.7Mb    6.3Mb       xz
  regulonthca.rda    5.2Mb    4.3Mb       xz
  regulonthym.rda    6.7Mb    5.3Mb       xz
  regulonucec.rda    8.2Mb    6.9Mb       xz
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘aracne.networks.Rnw’... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.16-data-experiment/meat/aracne.networks.Rcheck/00check.log’
for details.



Installation output

aracne.networks.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL aracne.networks
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’
* installing *source* package ‘aracne.networks’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (aracne.networks)

Tests output


Example timings

aracne.networks.Rcheck/aracne.networks-Ex.timings

nameusersystemelapsed
aracne.networks-package1.7120.0481.760
regulonblca1.7250.0241.750
regulonbrca1.4370.0391.477
reguloncesc2.1430.0372.179
reguloncoad1.6250.0271.652
regulonesca1.7500.0321.782
regulongbm1.9760.0161.991
regulonhnsc1.7900.0321.821
regulonkirc1.4140.0391.455
regulonkirp1.3880.0161.405
regulonlaml2.0020.0472.051
regulonlihc1.7170.0041.722
regulonluad1.4430.0121.456
regulonlusc2.1050.0232.128
regulonnet2.4820.0492.529
regulonov2.2040.0122.216
regulonpaad1.7520.0121.764
regulonpcpg2.3810.0632.444
regulonprad1.3770.0011.377
regulonread1.7000.0041.704
regulonsarc1.8540.0311.885
regulonstad2.6190.0132.630
regulontgct1.640.001.64
regulonthca0.9430.0000.943
regulonthym1.2970.0031.301
regulonucec1.8670.0331.898
write.regulon1.8170.0231.841