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This page was generated on 2023-04-11 14:50:27 -0400 (Tue, 11 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for RTCGA.CNV on nebbiolo2


To the developers/maintainers of the RTCGA.CNV package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 329/416HostnameOS / ArchINSTALLBUILDCHECK
RTCGA.CNV 1.26.0  (landing page)
Marcin Kosinski
Snapshot Date: 2023-04-11 07:30:01 -0400 (Tue, 11 Apr 2023)
git_url: https://git.bioconductor.org/packages/RTCGA.CNV
git_branch: RELEASE_3_16
git_last_commit: 075cf44
git_last_commit_date: 2022-11-01 11:10:10 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

Summary

Package: RTCGA.CNV
Version: 1.26.0
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:RTCGA.CNV.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings RTCGA.CNV_1.26.0.tar.gz
StartedAt: 2023-04-11 12:14:50 -0400 (Tue, 11 Apr 2023)
EndedAt: 2023-04-11 12:15:46 -0400 (Tue, 11 Apr 2023)
EllapsedTime: 55.7 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: RTCGA.CNV.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:RTCGA.CNV.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings RTCGA.CNV_1.26.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/RTCGA.CNV.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘RTCGA.CNV/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RTCGA.CNV’ version ‘1.26.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RTCGA.CNV’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 35.9Mb
  sub-directories of 1Mb or more:
    data  35.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
  LazyData DB of 35.7 MB without LazyDataCompression set
  See §1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘downloading_cnv_datasets.Rmd’ using ‘UTF-8’... OK
  ‘frequency_of_cnv_for_mdm3.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.16-data-experiment/meat/RTCGA.CNV.Rcheck/00check.log’
for details.



Installation output

RTCGA.CNV.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL RTCGA.CNV
###
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* installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’
* installing *source* package ‘RTCGA.CNV’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RTCGA.CNV)

Tests output


Example timings