Back to Build/check report for BioC 3.16 experimental data
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This page was generated on 2023-04-11 14:50:27 -0400 (Tue, 11 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for RNASeqRData on nebbiolo2


To the developers/maintainers of the RNASeqRData package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 319/416HostnameOS / ArchINSTALLBUILDCHECK
RNASeqRData 1.16.0  (landing page)
Kuan-Hao Chao
Snapshot Date: 2023-04-11 07:30:01 -0400 (Tue, 11 Apr 2023)
git_url: https://git.bioconductor.org/packages/RNASeqRData
git_branch: RELEASE_3_16
git_last_commit: ffe437a
git_last_commit_date: 2022-11-01 11:20:00 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

Summary

Package: RNASeqRData
Version: 1.16.0
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:RNASeqRData.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings RNASeqRData_1.16.0.tar.gz
StartedAt: 2023-04-11 12:12:58 -0400 (Tue, 11 Apr 2023)
EndedAt: 2023-04-11 12:13:10 -0400 (Tue, 11 Apr 2023)
EllapsedTime: 11.7 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: RNASeqRData.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:RNASeqRData.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings RNASeqRData_1.16.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/RNASeqRData.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘RNASeqRData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RNASeqRData’ version ‘1.16.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RNASeqRData’ can be installed ... WARNING
Found the following significant warnings:
  Warning: Package 'RNASeqRData' is deprecated and will be removed from
See ‘/home/biocbuild/bbs-3.16-data-experiment/meat/RNASeqRData.Rcheck/00install.out’ for details.
* checking installed package size ... NOTE
  installed size is 69.4Mb
  sub-directories of 1Mb or more:
    extdata  68.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... NOTE
Package has no Sweave vignette sources and no VignetteBuilder field.
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.16-data-experiment/meat/RNASeqRData.Rcheck/00check.log’
for details.



Installation output

RNASeqRData.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL RNASeqRData
###
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* installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’
* installing *source* package ‘RNASeqRData’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  ‘RNASeqRData’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'RNASeqRData' is deprecated and will be removed from
  Bioconductor version 3.17
** testing if installed package can be loaded from final location
Warning: Package 'RNASeqRData' is deprecated and will be removed from
  Bioconductor version 3.17
** testing if installed package keeps a record of temporary installation path
* DONE (RNASeqRData)

Tests output


Example timings