Back to Mac ARM64 build report for BioC 3.16
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

This page was generated on 2023-04-19 11:01:54 -0400 (Wed, 19 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnsonmacOS 13.0 Venturaarm644.2.2 (2022-10-31) -- "Innocent and Trusting" 4256
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for gaia on kjohnson


To the developers/maintainers of the gaia package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 731/2183HostnameOS / ArchINSTALLBUILDBUILD BIN
gaia 2.42.0  (landing page)
S. Morganella
Snapshot Date: 2023-04-12 13:00:02 -0400 (Wed, 12 Apr 2023)
git_url: https://git.bioconductor.org/packages/gaia
git_branch: RELEASE_3_16
git_last_commit: e6dd28f
git_last_commit_date: 2022-11-01 11:05:27 -0400 (Tue, 01 Nov 2022)
kjohnsonmacOS 13.0 Ventura / arm64  OK    ERROR  skipped

Summary

Package: gaia
Version: 2.42.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data gaia
StartedAt: 2023-04-17 07:02:38 -0400 (Mon, 17 Apr 2023)
EndedAt: 2023-04-17 07:02:46 -0400 (Mon, 17 Apr 2023)
EllapsedTime: 7.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data gaia
###
##############################################################################
##############################################################################


* checking for file ‘gaia/DESCRIPTION’ ... OK
* preparing ‘gaia’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘gaia.Rnw’ using Sweave
Warning: Package 'gaia' is deprecated and will be removed from Bioconductor
  version 3.17
Loading Marker Informations
........................
Done
Loading Copy Number Data
........................................................................
Done

Performing Data Preprocessing

Homogeneous cannot be applied on the data (data must contain exactly two different kinds of aberrations)


Done
Computing Probability Distribution
................................................................................................................................................
Done
Assessing the Significance of Observed Data
........................................................................
Done
Running Standard peel-off Algorithm With Significance Threshold of 0.25
........................................................................
Done

Writing Output File 'CompleteResults.txt' Containing the Significant Regions

File 'CompleteResults.txt' Saved


Performing Data Preprocessing

Error: processing vignette 'gaia.Rnw' failed with diagnostics:
 chunk 8 (label = runGAIA_notDefault) 
Error in if (chromosomes == -1) { : the condition has length > 1

--- failed re-building ‘gaia.Rnw’

SUMMARY: processing the following file failed:
  ‘gaia.Rnw’

Error: Vignette re-building failed.
Execution halted