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This page was generated on 2023-04-19 11:01:54 -0400 (Wed, 19 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnsonmacOS 13.0 Venturaarm644.2.2 (2022-10-31) -- "Innocent and Trusting" 4256
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BUILD results for flowUtils on kjohnson


To the developers/maintainers of the flowUtils package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 709/2183HostnameOS / ArchINSTALLBUILDBUILD BIN
flowUtils 1.62.0  (landing page)
Josef Spidlen
Snapshot Date: 2023-04-12 13:00:02 -0400 (Wed, 12 Apr 2023)
git_url: https://git.bioconductor.org/packages/flowUtils
git_branch: RELEASE_3_16
git_last_commit: 812865d
git_last_commit_date: 2022-11-01 10:42:23 -0400 (Tue, 01 Nov 2022)
kjohnsonmacOS 13.0 Ventura / arm64  OK    ERROR  skipped

Summary

Package: flowUtils
Version: 1.62.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowUtils
StartedAt: 2023-04-17 06:49:34 -0400 (Mon, 17 Apr 2023)
EndedAt: 2023-04-17 06:49:48 -0400 (Mon, 17 Apr 2023)
EllapsedTime: 14.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowUtils
###
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* checking for file ‘flowUtils/DESCRIPTION’ ... OK
* preparing ‘flowUtils’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘HowTo-flowUtils.Rnw’ using Sweave
No methods found in package ‘flowCore’ for requests: ‘action’, ‘assign’, ‘Data’, ‘gate’, ‘tree’ when loading ‘flowUtils’
Warning: Package 'flowUtils' is deprecated and will be removed from Bioconductor
  version 3.17

Error: processing vignette 'HowTo-flowUtils.Rnw' failed with diagnostics:
 chunk 9 (label = ApplyGatingML1) 
Error in if (class(mySpill) != "matrix") mySpill <- parseMatrixFromString(mySpill,  : 
  the condition has length > 1

--- failed re-building ‘HowTo-flowUtils.Rnw’

SUMMARY: processing the following file failed:
  ‘HowTo-flowUtils.Rnw’

Error: Vignette re-building failed.
Execution halted