############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GeneGA ### ############################################################################## ############################################################################## * checking for file ‘GeneGA/DESCRIPTION’ ... OK * preparing ‘GeneGA’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘GeneGA.Rnw’ using Sweave Loading required package: seqinr Loading required package: hash hash-2.2.6.2 provided by Decision Patterns sh: RNAfold: command not found Error: processing vignette 'GeneGA.Rnw' failed with diagnostics: chunk 3 Error in system(paste("echo ", x, "|RNAfold", sep = ""), intern = T) : error in running command --- failed re-building ‘GeneGA.Rnw’ SUMMARY: processing the following file failed: ‘GeneGA.Rnw’ Error: Vignette re-building failed. Execution halted