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This page was generated on 2023-04-19 11:01:53 -0400 (Wed, 19 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnsonmacOS 13.0 Venturaarm644.2.2 (2022-10-31) -- "Innocent and Trusting" 4256
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for CoGAPS on kjohnson


To the developers/maintainers of the CoGAPS package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 380/2183HostnameOS / ArchINSTALLBUILDBUILD BIN
CoGAPS 3.18.0  (landing page)
Elana J. Fertig
Snapshot Date: 2023-04-12 13:00:02 -0400 (Wed, 12 Apr 2023)
git_url: https://git.bioconductor.org/packages/CoGAPS
git_branch: RELEASE_3_16
git_last_commit: 659a6a2
git_last_commit_date: 2022-11-01 11:05:12 -0400 (Tue, 01 Nov 2022)
kjohnsonmacOS 13.0 Ventura / arm64  ERROR    ERROR  skipped

Summary

Package: CoGAPS
Version: 3.18.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CoGAPS
StartedAt: 2023-04-17 01:01:45 -0400 (Mon, 17 Apr 2023)
EndedAt: 2023-04-17 01:01:50 -0400 (Mon, 17 Apr 2023)
EllapsedTime: 4.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CoGAPS
###
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* checking for file ‘CoGAPS/DESCRIPTION’ ... OK
* preparing ‘CoGAPS’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘CoGAPS’ ...
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether clang++ -arch arm64 -std=gnu++14 accepts -g... yes
checking how to run the C++ preprocessor... clang++ -arch arm64 -std=gnu++14 -E
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether clang++ -arch arm64 -std=gnu++14 accepts -g... (cached) yes
./configure: line 2752: AX_COMPILER_VENDOR: command not found
./configure: line 2753: AX_COMPILER_VERSION: command not found
./configure: line 2764: AX_OPENMP: command not found
building on  compiler version 
Using AVX instructions if available
configure: creating ./config.status
config.status: creating src/Makevars
** libs
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DBOOST_MATH_PROMOTE_DOUBLE_POLICY=0 -DGAPS_DISABLE_CHECKPOINTS -D__GAPS_R_BUILD__ -Iinclude -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/BH/include' -I/opt/R/arm64/include  -march=native  -fPIC  -falign-functions=64 -Wall -g -O2  -c Cogaps.cpp -o Cogaps.o
clang: error: the clang compiler does not support '-march=native'
make: *** [Cogaps.o] Error 1
ERROR: compilation failed for package ‘CoGAPS’
* removing ‘/private/tmp/RtmppdR1A8/Rinst16297233df05a/CoGAPS’
      -----------------------------------
ERROR: package installation failed