############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data tspair ### ############################################################################## ############################################################################## * checking for file ‘tspair/DESCRIPTION’ ... OK * preparing ‘tspair’: * checking DESCRIPTION meta-information ... OK * cleaning src * checking whether ‘INDEX’ is up-to-date ... NO * use ‘--force’ to remove the existing ‘INDEX’ * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘tsp.Rnw’ using Sweave Loading required package: Biobase Loading required package: BiocGenerics Attaching package: ‘BiocGenerics’ The following objects are masked from ‘package:stats’: IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base’: Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which.max, which.min Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Warning: Package 'tspair' is deprecated and will be removed from Bioconductor version 3.17 Error: processing vignette 'tsp.Rnw' failed with diagnostics: chunk 2 Error in if (class(dat) == "ExpressionSet") { : the condition has length > 1 --- failed re-building ‘tsp.Rnw’ SUMMARY: processing the following file failed: ‘tsp.Rnw’ Error: Vignette re-building failed. Execution halted