############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scPCA ### ############################################################################## ############################################################################## * checking for file ‘scPCA/DESCRIPTION’ ... OK * preparing ‘scPCA’: * checking DESCRIPTION meta-information ... OK * installing the package to process help pages Loading required namespace: scPCA * saving partial Rd database * creating vignettes ... ERROR --- re-building ‘scpca_intro.Rmd’ using rmarkdown Attaching package: 'dplyr' The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union Loading required package: lars Loaded lars 1.3 Warning in microbenchmark(`Zou et al.` = scPCA(target = toy_df[, 1:30], : less accurate nanosecond times to avoid potential integer overflows Coordinate system already present. Adding new coordinate system, which will replace the existing one. Quitting from lines 403-420 (scpca_intro.Rmd) Error: processing vignette 'scpca_intro.Rmd' failed with diagnostics: there is no package called 'splatter' --- failed re-building ‘scpca_intro.Rmd’ SUMMARY: processing the following file failed: ‘scpca_intro.Rmd’ Error: Vignette re-building failed. Execution halted