############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data pqsfinder ### ############################################################################## ############################################################################## * checking for file ‘pqsfinder/DESCRIPTION’ ... OK * preparing ‘pqsfinder’: * checking DESCRIPTION meta-information ... OK * cleaning src * running ‘cleanup’ * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘pqsfinder.Rmd’ using rmarkdown Loading required package: Biostrings Loading required package: BiocGenerics Attaching package: 'BiocGenerics' The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which.max, which.min Loading required package: S4Vectors Loading required package: stats4 Attaching package: 'S4Vectors' The following objects are masked from 'package:base': I, expand.grid, unname Loading required package: IRanges Loading required package: XVector Loading required package: GenomeInfoDb Attaching package: 'Biostrings' The following object is masked from 'package:base': strsplit Searching on sense strand... Search status: finished Searching on antisense strand... Search status: finished Searching on sense strand... Search status: finished Searching on antisense strand... Search status: finished Searching on sense strand... Search status: finished Searching on antisense strand... Search status: finished Quitting from lines 72-80 (pqsfinder.Rmd) Error: processing vignette 'pqsfinder.Rmd' failed with diagnostics: there is no package called 'Gviz' --- failed re-building ‘pqsfinder.Rmd’ SUMMARY: processing the following file failed: ‘pqsfinder.Rmd’ Error: Vignette re-building failed. Execution halted