##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data msPurity
###
##############################################################################
##############################################################################


* checking for file ‘msPurity/DESCRIPTION’ ... OK
* preparing ‘msPurity’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd’ using rmarkdown
Loading required package: Rcpp
Quitting from lines 38-52 (msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd) 
Error: processing vignette 'msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd' failed with diagnostics:
there is no package called 'xcms'
--- failed re-building ‘msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd’

--- re-building ‘msPurity-spectral-database-vignette.Rmd’ using rmarkdown
--- finished re-building ‘msPurity-spectral-database-vignette.Rmd’

--- re-building ‘msPurity-vignette.Rmd’ using rmarkdown
only MS1 data
No MS/MS spectra for file:  /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/msPurityData/extdata/lcms/mzML/LCMS_1.mzML
Quitting from lines 146-171 (msPurity-vignette.Rmd) 
Error: processing vignette 'msPurity-vignette.Rmd' failed with diagnostics:
there is no package called 'xcms'
--- failed re-building ‘msPurity-vignette.Rmd’

SUMMARY: processing the following files failed:
  ‘msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd’
  ‘msPurity-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted