############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf metahdep.buildbin-libdir && mkdir metahdep.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh metahdep_1.56.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R metahdep.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=metahdep.buildbin-libdir metahdep_1.56.0.tar.gz' >>>>>>> * installing *source* package ‘metahdep’ ... ** using staged installation ** libs clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c metahdep.c -o metahdep.o metahdep.c:471:79: warning: incompatible pointer to integer conversion passing 'const char *' to parameter of type 'char' [-Wint-conversion] index = metan_binary_search_unique(name_list, sort_index, R_old_names, j, CHAR(STRING_ELT(R_old_chipsets, j)), i); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /Library/Frameworks/R.framework/Resources/include/Rinternals.h:197:17: note: expanded from macro 'CHAR' #define CHAR(x) R_CHAR(x) ^~~~~~~~~ metahdep.c:372:103: note: passing argument to parameter 'chipset_name' here SEXP metan_binary_search_unique(SEXP name_list, SEXP sort_index, SEXP gene_name, int gene_index, char chipset_name, int study_num) ^ 1 warning generated. clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o metahdep.so metahdep.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.16-bioc/meat/metahdep.buildbin-libdir/00LOCK-metahdep/00new/metahdep/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (metahdep) >>>>>>> >>>>>>> FIXING LINKS FOR metahdep.buildbin-libdir/metahdep/libs/metahdep.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "metahdep.buildbin-libdir/metahdep/libs/metahdep.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "metahdep.buildbin-libdir/metahdep/libs/metahdep.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "metahdep.buildbin-libdir/metahdep/libs/metahdep.so"