############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf genArise.buildbin-libdir && mkdir genArise.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=genArise.buildbin-libdir genArise_1.74.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'genArise' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Note: possible error in 'pdf(paste(name, ".pdf", ': unused argument (horiz = FALSE) Note: possible error in 'pdf(paste(name, ".pdf", ': unused argument (horiz = FALSE) Note: possible error in 'pdf(paste(name, "OriginalCy3vsCy5.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "OriginalRvsI.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "OriginalMvsA.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "CorrectedCy3vsCy5.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "CorrectedRvsI.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "CorrectedMvsA.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "NormalCy3vsCy5.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "NormalRvsI.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "NormalMvsA.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "FilterCy3vsCy5.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "FilterRvsI.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "FilterMvsA.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "NoDuplicatesCy3vsCy5.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "NoDuplicatesRvsI.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "NoDuplicatesMvsA.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "OriginalCy3vsCy5.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "OriginalRvsI.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "OriginalMvsA.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "CorrectedCy3vsCy5.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "CorrectedRvsI.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "CorrectedMvsA.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "NormalCy3vsCy5.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "NormalRvsI.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "NormalMvsA.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "FilterCy3vsCy5.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "FilterRvsI.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "FilterMvsA.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "NoDuplicatesCy3vsCy5.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "NoDuplicatesRvsI.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "NoDuplicatesMvsA.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(name, horiz = F, ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, ".pdf", ': unused argument (horiz = FALSE) Note: possible error in 'pdf(paste(name, "R&G.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "BgCy5.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "BgCy3.pdf", ': unused argument (horiz = F) Note: possible error in 'pdf(paste(name, "Swap.pdf", ': unused argument (horiz = F) ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'genArise' as genArise_1.74.0.zip * DONE (genArise)