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### Running command:
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###   chmod a+r gaia -R && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data gaia
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* checking for file 'gaia/DESCRIPTION' ... OK
* preparing 'gaia':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'gaia.Rnw' using Sweave
Warning: Package 'gaia' is deprecated and will be removed from Bioconductor
  version 3.17
Loading Marker Informations
........................
Done
Loading Copy Number Data
........................................................................
Done

Performing Data Preprocessing

Homogeneous cannot be applied on the data (data must contain exactly two different kinds of aberrations)


Done
Computing Probability Distribution
................................................................................................................................................
Done
Assessing the Significance of Observed Data
........................................................................
Done
Running Standard peel-off Algorithm With Significance Threshold of 0.25
........................................................................
Done

Writing Output File 'CompleteResults.txt' Containing the Significant Regions

File 'CompleteResults.txt' Saved


Performing Data Preprocessing

Error: processing vignette 'gaia.Rnw' failed with diagnostics:
 chunk 8 (label = runGAIA_notDefault) 
Error in if (chromosomes == -1) { : the condition has length > 1

--- failed re-building 'gaia.Rnw'

SUMMARY: processing the following file failed:
  'gaia.Rnw'

Error: Vignette re-building failed.
Execution halted