############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowVS ### ############################################################################## ############################################################################## * checking for file ‘flowVS/DESCRIPTION’ ... OK * preparing ‘flowVS’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘flowVS.Rnw’ using knitr Loading required package: flowCore Loading required package: flowViz Loading required package: lattice Loading required package: flowStats Warning: replacing previous import 'flowViz::contour' by 'graphics::contour' when loading 'flowStats' Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Warning in optimize(afun, b, maximum = TRUE) : NA/Inf replaced by maximum positive value Quitting from lines 173-176 (flowVS.Rnw) Error: processing vignette 'flowVS.Rnw' failed with diagnostics: there is no package called 'vsn' --- failed re-building ‘flowVS.Rnw’ SUMMARY: processing the following file failed: ‘flowVS.Rnw’ Error: Vignette re-building failed. Execution halted