############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf RProtoBufLib.buildbin-libdir && mkdir RProtoBufLib.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=RProtoBufLib.buildbin-libdir RProtoBufLib_2.10.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'RProtoBufLib' ... ** using staged installation ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** ** libs "F:/biocbuild/bbs-3.16-bioc/R/bin/x64/Rscript.exe" "../tools/downloadlibs.R" 3.8.0 g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I../inst/include/ -I../windows/protobuf-3.8.0/include -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c GatingSet_pb_lib/GatingSet.pb.cc -o GatingSet_pb_lib/GatingSet.pb.o mkdir -p "F:/biocbuild/bbs-3.16-bioc/meat/RProtoBufLib.buildbin-libdir/00LOCK-RProtoBufLib/00new/RProtoBufLib/include" cp -r ../windows/protobuf-3.8.0/include/google "F:/biocbuild/bbs-3.16-bioc/meat/RProtoBufLib.buildbin-libdir/00LOCK-RProtoBufLib/00new/RProtoBufLib/include" mkdir -p "F:/biocbuild/bbs-3.16-bioc/meat/RProtoBufLib.buildbin-libdir/00LOCK-RProtoBufLib/00new/RProtoBufLib/lib/x64" cp ../windows/protobuf-3.8.0/lib/x64-ucrt/libprotobuf.a "F:/biocbuild/bbs-3.16-bioc/meat/RProtoBufLib.buildbin-libdir/00LOCK-RProtoBufLib/00new/RProtoBufLib/lib/x64/libprotobuf.a" cp GatingSet_pb_lib/GatingSet.pb.o "F:/biocbuild/bbs-3.16-bioc/meat/RProtoBufLib.buildbin-libdir/00LOCK-RProtoBufLib/00new/RProtoBufLib/lib/x64/GatingSet.pb.o" g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I../inst/include/ -I../windows/protobuf-3.8.0/include -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c dummy.cpp -o dummy.o g++ -shared -s -static-libgcc -o RProtoBufLib.dll tmp.def dummy.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.16-bioc/meat/RProtoBufLib.buildbin-libdir/00LOCK-RProtoBufLib/00new/RProtoBufLib/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'RProtoBufLib' as RProtoBufLib_2.10.0.zip * DONE (RProtoBufLib)