############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data InteractiveComplexHeatmap ### ############################################################################## ############################################################################## * checking for file ‘InteractiveComplexHeatmap/DESCRIPTION’ ... OK * preparing ‘InteractiveComplexHeatmap’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘InteractiveComplexHeatmap.Rmd’ using rmarkdown Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "1. How to visualize heatmaps interactively", and the latter is "How to visualize complex heatmaps interactively". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check. --- finished re-building ‘InteractiveComplexHeatmap.Rmd’ --- re-building ‘decoration.Rmd’ using rmarkdown Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "4. Decorations on heatmaps", and the latter is "Decorations on heatmaps". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check. --- finished re-building ‘decoration.Rmd’ --- re-building ‘deseq2_app.Rmd’ using rmarkdown Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "6. A Shiny app for visualizing DESeq2 results", and the latter is "A Shiny app for visualizing DESeq2 results". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check. --- finished re-building ‘deseq2_app.Rmd’ --- re-building ‘from_scratch.Rmd’ using rmarkdown Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "7. Implement interactive heatmap from scratch", and the latter is "Implement interactive heatmap from scratch". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check. --- finished re-building ‘from_scratch.Rmd’ --- re-building ‘implementation.Rmd’ using rmarkdown Loading required namespace: gridtext Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "2. How interactive complex heatmap is implemented", and the latter is "How interactive complex heatmap is implemented". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check. --- finished re-building ‘implementation.Rmd’ --- re-building ‘interactivate_indirect.Rmd’ using rmarkdown Quitting from lines 43-45 (interactivate_indirect.Rmd) Error: processing vignette 'interactivate_indirect.Rmd' failed with diagnostics: there is no package called 'SC3' --- failed re-building ‘interactivate_indirect.Rmd’ --- re-building ‘share.Rmd’ using rmarkdown Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "8. Share interactive heatmaps to collaborators", and the latter is "Share interactive heatmaps to collaborators". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check. --- finished re-building ‘share.Rmd’ --- re-building ‘shiny_dev.Rmd’ using rmarkdown Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "3. Functions for Shiny app development", and the latter is "Functions for Shiny app development". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check. --- finished re-building ‘shiny_dev.Rmd’ SUMMARY: processing the following file failed: ‘interactivate_indirect.Rmd’ Error: Vignette re-building failed. Execution halted