############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data InterMineR ### ############################################################################## ############################################################################## * checking for file ‘InterMineR/DESCRIPTION’ ... OK * preparing ‘InterMineR’: * checking DESCRIPTION meta-information ... OK Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:41: unexpected section header '\arguments' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:42: unknown macro '\item' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:50: unexpected section header '\arguments' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:51: unknown macro '\item' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:59: unexpected section header '\arguments' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:60: unknown macro '\item' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:63: unknown macro '\item' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:66: unknown macro '\item' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:69: unknown macro '\item' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:72: unknown macro '\item' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:80: unexpected section header '\arguments' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:81: unknown macro '\item' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:84: unknown macro '\item' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:87: unknown macro '\item' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:90: unknown macro '\item' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:98: unexpected section header '\arguments' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:99: unknown macro '\item' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:102: unknown macro '\item' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:105: unknown macro '\item' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:108: unknown macro '\item' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:116: unexpected section header '\arguments' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:117: unknown macro '\item' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:120: unknown macro '\item' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:123: unknown macro '\item' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:126: unknown macro '\item' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:134: unexpected section header '\arguments' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:135: unknown macro '\item' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:138: unknown macro '\item' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:141: unknown macro '\item' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:144: unknown macro '\item' Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:147: unknown macro '\item' * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘InterMineR.Rmd’ using rmarkdown Warning: multiple methods tables found for 'union' Warning: multiple methods tables found for 'subtract' Warning: multiple methods tables found for 'intersect' Attaching package: 'InterMineR' The following objects are masked from 'package:base': intersect, union Loading required package: Gviz Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called 'Gviz' Quitting from lines 477-491 (InterMineR.Rmd) Error: processing vignette 'InterMineR.Rmd' failed with diagnostics: could not find function "AnnotationTrack" --- failed re-building ‘InterMineR.Rmd’ SUMMARY: processing the following file failed: ‘InterMineR.Rmd’ Error: Vignette re-building failed. Execution halted