############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GenomicDataCommons ### ############################################################################## ############################################################################## * checking for file ‘GenomicDataCommons/DESCRIPTION’ ... OK * preparing ‘GenomicDataCommons’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘overview.Rmd’ using rmarkdown Loading required package: magrittr Attaching package: 'GenomicDataCommons' The following object is masked from 'package:stats': filter --- finished re-building ‘overview.Rmd’ --- re-building ‘questions-and-answers.Rmd’ using rmarkdown --- finished re-building ‘questions-and-answers.Rmd’ --- re-building ‘somatic_mutations.Rmd’ using rmarkdown Quitting from lines 69-75 (somatic_mutations.Rmd) Error: processing vignette 'somatic_mutations.Rmd' failed with diagnostics: there is no package called 'VariantAnnotation' --- failed re-building ‘somatic_mutations.Rmd’ SUMMARY: processing the following file failed: ‘somatic_mutations.Rmd’ Error: Vignette re-building failed. Execution halted