Back to Workflows build report for BioC 3.15

This page was generated on 2022-10-18 14:00:09 -0400 (Tue, 18 Oct 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4386
merida1macOS 10.14.6 Mojavex86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4205
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for TCGAWorkflow on nebbiolo1


To the developers/maintainers of the TCGAWorkflow package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 28/29HostnameOS / ArchINSTALLBUILD
TCGAWorkflow 1.20.0  (landing page)
Tiago Chedraoui Silva
Snapshot Date: 2022-10-18 07:45:02 -0400 (Tue, 18 Oct 2022)
git_url: https://git.bioconductor.org/packages/TCGAWorkflow
git_branch: RELEASE_3_15
git_last_commit: d9c78c1
git_last_commit_date: 2022-04-26 12:41:06 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    ERROR  
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  

Summary

Package: TCGAWorkflow
Version: 1.20.0
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL TCGAWorkflow
StartedAt: 2022-10-18 08:00:20 -0400 (Tue, 18 Oct 2022)
EndedAt: 2022-10-18 08:01:12 -0400 (Tue, 18 Oct 2022)
EllapsedTime: 51.3 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL TCGAWorkflow
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’
* installing *source* package ‘TCGAWorkflow’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'SummarizedExperiment::as.data.frame' by 'motifStack::as.data.frame' when loading 'TCGAWorkflow'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'SummarizedExperiment::as.data.frame' by 'motifStack::as.data.frame' when loading 'TCGAWorkflow'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'SummarizedExperiment::as.data.frame' by 'motifStack::as.data.frame' when loading 'TCGAWorkflow'
** testing if installed package keeps a record of temporary installation path
* DONE (TCGAWorkflow)