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This page was generated on 2022-02-17 08:36:54 -0500 (Thu, 17 Feb 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 1362
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for signatureSearchData on nebbiolo2


To the developers/maintainers of the signatureSearchData package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 348/406HostnameOS / ArchINSTALLBUILDCHECK
signatureSearchData 1.9.5  (landing page)
Brendan Gongol
Snapshot Date: 2022-02-17 04:00:02 -0500 (Thu, 17 Feb 2022)
git_url: https://git.bioconductor.org/packages/signatureSearchData
git_branch: master
git_last_commit: 03d18c1
git_last_commit_date: 2022-02-14 17:01:36 -0500 (Mon, 14 Feb 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: signatureSearchData
Version: 1.9.5
Command: /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:signatureSearchData.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings signatureSearchData_1.9.5.tar.gz
StartedAt: 2022-02-17 07:58:54 -0500 (Thu, 17 Feb 2022)
EndedAt: 2022-02-17 08:00:15 -0500 (Thu, 17 Feb 2022)
EllapsedTime: 81.2 seconds
RetCode: 0
Status:   OK  
CheckDir: signatureSearchData.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:signatureSearchData.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings signatureSearchData_1.9.5.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/signatureSearchData.Rcheck’
* using R Under development (unstable) (2022-01-05 r81451)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘signatureSearchData/DESCRIPTION’ ... OK
* this is package ‘signatureSearchData’ version ‘1.9.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘signatureSearchData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  ‘ExperimentHub’ ‘rhdf5’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
ES_NULL 8.087  0.527   9.034
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.15-data-experiment/meat/signatureSearchData.Rcheck/00check.log’
for details.



Installation output

signatureSearchData.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD INSTALL signatureSearchData
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.15-data-experiment/R/library’
* installing *source* package ‘signatureSearchData’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (signatureSearchData)

Tests output


Example timings

signatureSearchData.Rcheck/signatureSearchData-Ex.timings

nameusersystemelapsed
ES_NULL8.0870.5279.034
GO_DATA2.2180.1402.643
GO_DATA_drug1.3520.0521.689
cmap0.1720.0040.175
cmap_expr0.1850.0090.194
cmap_rank0.1900.0080.198
combineNormRes0.0020.0000.001
combineResults0.0010.0000.001
dtlink_db_clue_sti1.3390.0211.561
getCmapCEL0.0010.0000.001
goAnno0.9100.0471.163
goAnno_drug0.8730.0401.346
inst_filter0.0820.0000.083
lincs0.0640.0000.064
lincs_expr0.0940.0000.094
meanExpr0.0520.0000.052
normalizeCel000
probe2gene0.0020.0000.002
runLimma2.9700.2083.178
sampleList2.3640.0002.364
sig_filter0.0510.0020.055
signatureSearchData1.2020.0321.464
taurefList0.8470.0321.183