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### Running command:
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###   /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:microbiomeDataSets.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings microbiomeDataSets_1.3.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/microbiomeDataSets.Rcheck’
* using R Under development (unstable) (2022-01-05 r81451)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘microbiomeDataSets/DESCRIPTION’ ... OK
* this is package ‘microbiomeDataSets’ version ‘1.3.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... NOTE
Found the following non-portable file path:
  microbiomeDataSets/docs/articles/microbiomeDataSets_files/accessible-code-block-0.0.1/empty-anchor.js

Tarballs are only required to store paths of up to 100 bytes and cannot
store those of more than 256 bytes, with restrictions including to 100
bytes for the final component.
See section ‘Package structure’ in the ‘Writing R Extensions’ manual.
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘microbiomeDataSets’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
SprockettTHData   11.271  0.985  12.869
LahtiMLData       11.186  0.971  13.455
GrieneisenTSData  11.246  0.731  12.856
SongQAData         8.243  0.748   9.617
HintikkaXOData     7.157  0.864   8.772
SilvermanAGutData  6.978  0.549   8.274
LahtiWAData        4.791  0.409   5.649
OKeefeDSData       4.788  0.359   5.690
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  Error in `readRDS(index_path)`: error reading from connection
  Backtrace:
      ▆
   1. └─microbiomeDataSets::LahtiWAData() at test.R:17:2
   2.   └─microbiomeDataSets:::.create_tse(...)
   3.     ├─microbiomeDataSets:::.get_assays(dataset, hub, assays, prefix)
   4.     │ └─microbiomeDataSets:::.get_res_by_path(hub, path)
   5.     └─ExperimentHub::ExperimentHub()
   6.       └─AnnotationHub::.Hub(...)
   7.         └─AnnotationHub:::.db_create_index(hub)
   8.           └─base::readRDS(index_path)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 12 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.15-data-experiment/meat/microbiomeDataSets.Rcheck/00check.log’
for details.