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This page was generated on 2022-02-17 08:36:53 -0500 (Thu, 17 Feb 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 1362
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for miRNATarget on nebbiolo2


To the developers/maintainers of the miRNATarget package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 233/406HostnameOS / ArchINSTALLBUILDCHECK
miRNATarget 1.33.0  (landing page)
Y-h. Taguchi
Snapshot Date: 2022-02-17 04:00:02 -0500 (Thu, 17 Feb 2022)
git_url: https://git.bioconductor.org/packages/miRNATarget
git_branch: master
git_last_commit: bd2c75c
git_last_commit_date: 2021-10-26 11:48:33 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: miRNATarget
Version: 1.33.0
Command: /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings miRNATarget_1.33.0.tar.gz
StartedAt: 2022-02-17 07:38:25 -0500 (Thu, 17 Feb 2022)
EndedAt: 2022-02-17 07:40:18 -0500 (Thu, 17 Feb 2022)
EllapsedTime: 113.5 seconds
RetCode: 0
Status:   OK  
CheckDir: miRNATarget.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings miRNATarget_1.33.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/miRNATarget.Rcheck’
* using R Under development (unstable) (2022-01-05 r81451)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.33.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.goutputstream-8N717W
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 59.6Mb
  sub-directories of 1Mb or more:
    data  59.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.15-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.



Installation output

miRNATarget.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD INSTALL miRNATarget
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.15-data-experiment/R/library’
* installing *source* package ‘miRNATarget’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (miRNATarget)

Tests output


Example timings

miRNATarget.Rcheck/miRNATarget-Ex.timings

nameusersystemelapsed
HS_conv_id0.1030.0030.107
HS_refseq_to_affy_hc_g1100.0050.0000.005
HS_refseq_to_affy_hg_focus0.0180.0000.018
HS_refseq_to_affy_hg_u133_plus_20.0690.0000.069
HS_refseq_to_affy_hg_u133a0.0430.0000.043
HS_refseq_to_affy_hg_u133a_20.0370.0030.041
HS_refseq_to_affy_hg_u133b0.0210.0000.022
HS_refseq_to_affy_hg_u95a0.0290.0000.028
HS_refseq_to_affy_hg_u95av20.0240.0000.024
HS_refseq_to_affy_hg_u95b0.0180.0000.017
HS_refseq_to_affy_hg_u95c0.0120.0000.012
HS_refseq_to_affy_hg_u95d0.0070.0000.007
HS_refseq_to_affy_hg_u95e0.0130.0000.012
HS_refseq_to_affy_huex_1_0_st_v21.1150.0231.139
HS_refseq_to_affy_hugene_1_0_st_v10.0560.0000.057
HS_refseq_to_affy_hugenefl0.0160.0000.016
HS_refseq_to_affy_u133_x3p0.0840.0040.089
HS_refseq_to_agilent_cgh_44b0.0170.0000.017
HS_refseq_to_agilent_wholegenome0.0840.0040.088
HS_refseq_to_canonical_transcript_stable_id0.0830.0000.084
HS_refseq_to_ccds0.0510.0000.051
HS_refseq_to_codelink0.0500.0030.054
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0020.0000.002
HS_refseq_to_efg_agilent_wholegenome_4x44k_v10.0020.0000.001
HS_refseq_to_efg_agilent_wholegenome_4x44k_v20.0020.0000.001
HS_refseq_to_embl1.0310.0191.051
HS_refseq_to_ensembl_exon_id0.0020.0010.002
HS_refseq_to_ensembl_gene_id0.0570.0030.062
HS_refseq_to_ensembl_peptide_id0.0550.0030.059
HS_refseq_to_ensembl_transcript_id0.0810.0000.081
HS_refseq_to_entrezgene0.0650.0000.065
HS_refseq_to_hgnc_id0.4260.0000.426
HS_refseq_to_hgnc_symbol0.0620.0000.062
HS_refseq_to_hgnc_transcript_name0.0610.0000.061
HS_refseq_to_illumina_humanht_120.0650.0040.069
HS_refseq_to_illumina_humanwg_6_v10.0550.0000.055
HS_refseq_to_illumina_humanwg_6_v20.0450.0000.046
HS_refseq_to_illumina_humanwg_6_v30.0520.0000.051
HS_refseq_to_interpro0.1680.0000.168
HS_refseq_to_ipi0.1740.0070.182
HS_refseq_to_merops0.0070.0000.007
HS_refseq_to_pdb0.160.000.16
HS_refseq_to_pfam0.1220.0000.122
HS_refseq_to_phalanx_onearray0.0710.0000.070
HS_refseq_to_protein_id2.320.022.34
HS_refseq_to_refseq_dna0.0910.0040.096
HS_refseq_to_refseq_genomic0.0010.0000.001
HS_refseq_to_refseq_peptide0.1660.0000.166
HS_refseq_to_rfam0.0040.0000.003
HS_refseq_to_rfam_gene_name0.0020.0000.002
HS_refseq_to_rfam_transcript_name0.0010.0000.001
HS_refseq_to_smart0.060.000.06
HS_refseq_to_tigrfam0.0080.0000.008
HS_refseq_to_ucsc0.0780.0000.078
HS_refseq_to_unigene0.1030.0000.102
HS_refseq_to_uniprot_genename0.0700.0000.069
HS_refseq_to_uniprot_genename_transcript_name0.0000.0020.002
HS_refseq_to_uniprot_sptrembl0.0010.0010.002
HS_refseq_to_uniprot_swissprot0.0020.0010.002
HS_refseq_to_uniprot_swissprot_accession0.0020.0000.002
HS_refseq_to_wikigene_id0.0010.0000.002
HS_refseq_to_wikigene_name0.0780.0000.078
MM_conv_id0.0030.0000.004
MM_refseq_to_affy_mg_u74a0.0260.0000.026
MM_refseq_to_affy_mg_u74av20.0230.0000.024
MM_refseq_to_affy_mg_u74b0.0190.0000.019
MM_refseq_to_affy_mg_u74bv20.0190.0000.020
MM_refseq_to_affy_mg_u74c0.0030.0040.007
MM_refseq_to_affy_mg_u74cv20.0060.0030.009
MM_refseq_to_affy_moe430a0.0520.0000.052
MM_refseq_to_affy_moe430b0.0240.0000.024
MM_refseq_to_affy_moex_1_0_st_v10.6470.0080.656
MM_refseq_to_affy_mogene_1_0_st_v10.0420.0000.043
MM_refseq_to_affy_mouse430_20.0420.0030.046
MM_refseq_to_affy_mouse430a_20.0330.0010.033
MM_refseq_to_affy_mu11ksuba0.0120.0000.012
MM_refseq_to_affy_mu11ksubb0.0090.0000.009
MM_refseq_to_agilent_wholegenome0.0650.0000.065
MM_refseq_to_canonical_transcript_stable_id0.0620.0000.062
MM_refseq_to_ccds0.0330.0000.033
MM_refseq_to_codelink0.0380.0000.038
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0000.0010.002
MM_refseq_to_efg_agilent_wholegenome_4x44k_v10.0000.0010.002
MM_refseq_to_efg_agilent_wholegenome_4x44k_v20.0010.0000.002
MM_refseq_to_embl0.3200.0070.328
MM_refseq_to_ensembl_exon_id0.0020.0000.002
MM_refseq_to_ensembl_gene_id0.2680.0000.268
MM_refseq_to_ensembl_peptide_id0.0380.0000.038
MM_refseq_to_ensembl_transcript_id0.0410.0000.041
MM_refseq_to_entrezgene0.0350.0000.035
MM_refseq_to_fantom0.1050.0000.104
MM_refseq_to_illumina_mousewg_6_v10.0510.0040.055
MM_refseq_to_illumina_mousewg_6_v20.0560.0000.056
MM_refseq_to_interpro0.0960.0080.104
MM_refseq_to_ipi0.0010.0000.001
MM_refseq_to_merops0.0040.0000.004
MM_refseq_to_mgi_id0.060.000.06
MM_refseq_to_mgi_symbol0.0650.0000.065
MM_refseq_to_mgi_transcript_name0.0730.0000.073
MM_refseq_to_pdb0.0180.0000.018
MM_refseq_to_pfam0.1020.0030.106
MM_refseq_to_phalanx_onearray0.0570.0010.056
MM_refseq_to_protein_id0.4090.0040.413
MM_refseq_to_refseq_dna0.0480.0040.052
MM_refseq_to_refseq_peptide0.0850.0000.085
MM_refseq_to_rfam0.0020.0000.002
MM_refseq_to_rfam_gene_name0.0020.0000.001
MM_refseq_to_rfam_transcript_name0.0010.0000.001
MM_refseq_to_smart0.0480.0000.048
MM_refseq_to_tigrfam0.0080.0000.008
MM_refseq_to_ucsc0.0680.0030.072
MM_refseq_to_unigene0.0750.0070.082
MM_refseq_to_uniprot_genename0.0640.0000.064
MM_refseq_to_uniprot_genename_transcript_name0.0030.0000.003
MM_refseq_to_uniprot_sptrembl0.0000.0020.002
MM_refseq_to_uniprot_swissprot0.0010.0000.002
MM_refseq_to_uniprot_swissprot_accession0.0020.0010.002
MM_refseq_to_wikigene_id0.0020.0000.002
MM_refseq_to_wikigene_name0.060.000.06
TBL21.8060.1111.918
TBL2_HS1.5690.1881.757
TBL2_MM0.9510.1601.111
conv_id0.0020.0000.003
id_conv0.0330.0000.034