Back to Build/check report for BioC 3.15 experimental data
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

This page was generated on 2022-02-17 08:36:52 -0500 (Thu, 17 Feb 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 1362
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for geneLenDataBase on nebbiolo2


To the developers/maintainers of the geneLenDataBase package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 139/406HostnameOS / ArchINSTALLBUILDCHECK
geneLenDataBase 1.31.0  (landing page)
Matthew Young , Nadia Davidson
Snapshot Date: 2022-02-17 04:00:02 -0500 (Thu, 17 Feb 2022)
git_url: https://git.bioconductor.org/packages/geneLenDataBase
git_branch: master
git_last_commit: 7e192c5
git_last_commit_date: 2021-10-26 11:45:27 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

Summary

Package: geneLenDataBase
Version: 1.31.0
Command: /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings geneLenDataBase_1.31.0.tar.gz
StartedAt: 2022-02-17 07:25:01 -0500 (Thu, 17 Feb 2022)
EndedAt: 2022-02-17 07:38:24 -0500 (Thu, 17 Feb 2022)
EllapsedTime: 803.7 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings geneLenDataBase_1.31.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/geneLenDataBase.Rcheck’
* using R Under development (unstable) (2022-01-05 r81451)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.31.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.15-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.



Installation output

geneLenDataBase.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD INSTALL geneLenDataBase
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.15-data-experiment/R/library’
* installing *source* package ‘geneLenDataBase’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geneLenDataBase)

Tests output


Example timings

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.1650.0160.180
anoCar1.genscan.LENGTH0.0720.0080.080
anoCar1.xenoRefGene.LENGTH1.9480.0321.980
anoGam1.ensGene.LENGTH0.1320.0080.139
anoGam1.geneid.LENGTH0.0870.0040.092
anoGam1.genscan.LENGTH0.0700.0040.073
apiMel1.genscan.LENGTH0.0470.0040.051
apiMel2.ensGene.LENGTH0.2180.0040.222
apiMel2.geneid.LENGTH0.2060.0080.214
apiMel2.genscan.LENGTH0.1400.0120.151
aplCal1.xenoRefGene.LENGTH0.7280.0080.736
bosTau2.geneSymbol.LENGTH0.0480.0000.048
bosTau2.geneid.LENGTH0.3100.0000.309
bosTau2.genscan.LENGTH0.1550.0000.155
bosTau2.refGene.LENGTH0.0710.0040.074
bosTau2.sgpGene.LENGTH0.1760.0000.177
bosTau3.ensGene.LENGTH0.1790.0000.179
bosTau3.geneSymbol.LENGTH0.0560.0080.063
bosTau3.geneid.LENGTH0.2130.0000.213
bosTau3.genscan.LENGTH0.1290.0000.129
bosTau3.refGene.LENGTH0.0590.0000.060
bosTau3.sgpGene.LENGTH0.1680.0040.172
bosTau4.ensGene.LENGTH0.2420.0040.246
bosTau4.geneSymbol.LENGTH0.0590.0040.063
bosTau4.genscan.LENGTH0.1180.0040.123
bosTau4.nscanGene.LENGTH0.0560.0000.056
bosTau4.refGene.LENGTH0.0520.0080.060
braFlo1.xenoRefGene.LENGTH0.8360.0200.856
caeJap1.xenoRefGene.LENGTH0.8160.0080.825
caePb1.xenoRefGene.LENGTH0.8640.0080.872
caePb2.xenoRefGene.LENGTH0.7610.0000.762
caeRem2.xenoRefGene.LENGTH0.6140.0000.614
caeRem3.xenoRefGene.LENGTH0.6900.0040.693
calJac1.genscan.LENGTH0.1150.0000.115
calJac1.nscanGene.LENGTH0.1470.0000.147
calJac1.xenoRefGene.LENGTH1.4180.0481.465
canFam1.ensGene.LENGTH0.1660.0160.181
canFam1.geneSymbol.LENGTH0.0070.0000.007
canFam1.genscan.LENGTH0.0810.0000.081
canFam1.nscanGene.LENGTH0.0760.0080.084
canFam1.refGene.LENGTH0.0060.0000.007
canFam1.xenoRefGene.LENGTH1.1630.0081.171
canFam2.ensGene.LENGTH0.1680.0000.167
canFam2.geneSymbol.LENGTH0.0080.0000.007
canFam2.genscan.LENGTH0.0730.0000.073
canFam2.nscanGene.LENGTH0.0830.0040.087
canFam2.refGene.LENGTH0.0070.0000.007
canFam2.xenoRefGene.LENGTH0.9970.0041.000
cavPor3.ensGene.LENGTH0.1550.0000.155
cavPor3.genscan.LENGTH0.1270.0000.127
cavPor3.nscanGene.LENGTH0.0890.0000.089
cavPor3.xenoRefGene.LENGTH2.3470.1482.495
cb1.xenoRefGene.LENGTH0.6110.0000.611
cb3.xenoRefGene.LENGTH0.5790.0160.594
ce2.geneSymbol.LENGTH0.0810.0000.082
ce2.geneid.LENGTH0.0620.0080.070
ce2.refGene.LENGTH0.0790.0000.079
ce4.geneSymbol.LENGTH0.0790.0000.080
ce4.refGene.LENGTH0.0730.0000.074
ce4.xenoRefGene.LENGTH0.0900.0040.094
ce6.ensGene.LENGTH0.1170.0040.121
ce6.geneSymbol.LENGTH0.0820.0000.081
ce6.refGene.LENGTH0.0750.0000.074
ce6.xenoRefGene.LENGTH0.1120.0000.113
ci1.geneSymbol.LENGTH0.0070.0000.007
ci1.refGene.LENGTH0.0060.0000.006
ci1.xenoRefGene.LENGTH0.2800.0030.283
ci2.ensGene.LENGTH0.0790.0000.078
ci2.geneSymbol.LENGTH0.0050.0000.006
ci2.refGene.LENGTH0.0050.0000.005
ci2.xenoRefGene.LENGTH0.4540.0040.458
danRer3.ensGene.LENGTH0.1620.0000.163
danRer3.geneSymbol.LENGTH0.0690.0000.069
danRer3.refGene.LENGTH0.0640.0000.063
danRer4.ensGene.LENGTH0.2070.0000.206
danRer4.geneSymbol.LENGTH0.0920.0000.093
danRer4.genscan.LENGTH0.110.000.11
danRer4.nscanGene.LENGTH0.1580.0080.166
danRer4.refGene.LENGTH0.1020.0080.110
danRer5.ensGene.LENGTH0.2320.0040.236
danRer5.geneSymbol.LENGTH0.0670.0000.067
danRer5.refGene.LENGTH0.0560.0000.056
danRer5.vegaGene.LENGTH0.0600.0040.064
danRer5.vegaPseudoGene.LENGTH0.0030.0000.003
danRer6.ensGene.LENGTH0.2290.0000.229
danRer6.geneSymbol.LENGTH0.0920.0040.095
danRer6.refGene.LENGTH0.0850.0040.089
danRer6.xenoRefGene.LENGTH1.1810.0041.186
dm1.geneSymbol.LENGTH0.0880.0000.088
dm1.genscan.LENGTH0.0340.0000.033
dm1.refGene.LENGTH0.0830.0060.089
dm2.geneSymbol.LENGTH0.0790.0050.085
dm2.geneid.LENGTH0.0560.0000.056
dm2.genscan.LENGTH0.0310.0040.034
dm2.nscanGene.LENGTH0.0760.0040.081
dm2.refGene.LENGTH0.0730.0000.073
dm3.geneSymbol.LENGTH0.0910.0000.092
dm3.nscanPasaGene.LENGTH0.0690.0040.072
dm3.refGene.LENGTH0.0810.0040.085
dp2.genscan.LENGTH0.0430.0000.043
dp2.xenoRefGene.LENGTH0.3860.0080.395
dp3.geneid.LENGTH0.0580.0000.059
dp3.genscan.LENGTH0.0320.0040.036
dp3.xenoRefGene.LENGTH0.1930.0040.197
droAna1.geneid.LENGTH0.0970.0000.098
droAna1.genscan.LENGTH0.0200.0060.025
droAna1.xenoRefGene.LENGTH0.4510.0010.453
droAna2.genscan.LENGTH0.3760.0160.393
droAna2.xenoRefGene.LENGTH0.4470.0000.447
droEre1.genscan.LENGTH0.0320.0000.031
droEre1.xenoRefGene.LENGTH0.3890.0000.390
droGri1.genscan.LENGTH0.0480.0000.048
droGri1.xenoRefGene.LENGTH0.7260.0040.730
droMoj1.geneid.LENGTH0.2310.0200.250
droMoj1.genscan.LENGTH0.0990.0000.099
droMoj1.xenoRefGene.LENGTH0.3850.0000.385
droMoj2.genscan.LENGTH0.0440.0000.043
droMoj2.xenoRefGene.LENGTH0.3880.0040.392
droPer1.genscan.LENGTH0.0450.0000.046
droPer1.xenoRefGene.LENGTH0.4490.0000.450
droSec1.genscan.LENGTH0.0340.0000.034
droSec1.xenoRefGene.LENGTH0.4170.0020.417
droSim1.geneid.LENGTH0.0410.0020.044
droSim1.genscan.LENGTH0.0280.0000.028
droSim1.xenoRefGene.LENGTH0.3250.0040.328
droVir1.geneid.LENGTH0.1250.0040.128
droVir1.genscan.LENGTH0.0520.0000.052
droVir1.xenoRefGene.LENGTH0.4220.0070.430
droVir2.genscan.LENGTH0.0430.0040.047
droVir2.xenoRefGene.LENGTH0.5690.0080.577
droYak1.geneid.LENGTH0.0780.0000.078
droYak1.genscan.LENGTH0.0530.0030.055
droYak1.xenoRefGene.LENGTH0.4990.0000.500
droYak2.genscan.LENGTH0.0490.0000.048
droYak2.xenoRefGene.LENGTH0.6790.0000.680
equCab1.geneSymbol.LENGTH0.0090.0000.008
equCab1.geneid.LENGTH0.1610.0040.165
equCab1.nscanGene.LENGTH0.0840.0000.084
equCab1.refGene.LENGTH0.0080.0000.009
equCab1.sgpGene.LENGTH0.1520.0000.151
equCab2.ensGene.LENGTH0.3440.0000.343
equCab2.geneSymbol.LENGTH0.0120.0000.013
equCab2.nscanGene.LENGTH0.1070.0000.108
equCab2.refGene.LENGTH0.0080.0040.012
equCab2.xenoRefGene.LENGTH1.0720.0041.077
felCat3.ensGene.LENGTH0.2410.0040.245
felCat3.geneSymbol.LENGTH0.0070.0000.007
felCat3.geneid.LENGTH0.8760.0040.879
felCat3.genscan.LENGTH0.3770.0040.382
felCat3.nscanGene.LENGTH0.1160.0000.117
felCat3.refGene.LENGTH0.0040.0000.005
felCat3.sgpGene.LENGTH0.1760.0000.177
felCat3.xenoRefGene.LENGTH1.9800.0161.997
fr1.ensGene.LENGTH0.1040.0000.105
fr1.genscan.LENGTH0.0860.0040.091
fr2.ensGene.LENGTH0.2110.0120.223
galGal2.ensGene.LENGTH0.6550.0160.671
galGal2.geneSymbol.LENGTH0.0190.0000.019
galGal2.geneid.LENGTH0.0480.0000.047
galGal2.genscan.LENGTH0.0610.0000.061
galGal2.refGene.LENGTH0.0170.0000.017
galGal2.sgpGene.LENGTH0.0490.0040.052
galGal3.ensGene.LENGTH0.1150.0000.115
galGal3.geneSymbol.LENGTH0.0170.0000.017
galGal3.genscan.LENGTH0.0880.0000.088
galGal3.nscanGene.LENGTH0.0830.0040.087
galGal3.refGene.LENGTH0.0160.0000.015
galGal3.xenoRefGene.LENGTH0.7450.0000.744
gasAcu1.ensGene.LENGTH0.1230.0000.122
gasAcu1.nscanGene.LENGTH0.1300.0000.129
hg16.acembly.LENGTH0.5310.0040.534
hg16.ensGene.LENGTH0.1060.0000.107
hg16.exoniphy.LENGTH0.3080.0120.320
hg16.geneSymbol.LENGTH0.1430.0240.168
hg16.geneid.LENGTH0.0670.0000.067
hg16.genscan.LENGTH0.0820.0080.090
hg16.knownGene.LENGTH0.1750.0000.176
hg16.refGene.LENGTH0.1210.0080.128
hg16.sgpGene.LENGTH0.0710.0000.070
hg17.acembly.LENGTH0.6650.0030.669
hg17.acescan.LENGTH0.0130.0000.013
hg17.ccdsGene.LENGTH0.3940.0040.398
hg17.ensGene.LENGTH0.1620.0000.163
hg17.exoniphy.LENGTH0.5510.0000.551
hg17.geneSymbol.LENGTH0.1640.0000.163
hg17.geneid.LENGTH0.1030.0000.102
hg17.genscan.LENGTH0.0800.0000.079
hg17.knownGene.LENGTH0.1500.0000.151
hg17.refGene.LENGTH0.1280.0000.128
hg17.sgpGene.LENGTH0.0850.0000.085
hg17.vegaGene.LENGTH0.0490.0000.050
hg17.vegaPseudoGene.LENGTH0.0220.0000.022
hg17.xenoRefGene.LENGTH0.3910.0000.391
hg18.acembly.LENGTH1.6040.0161.620
hg18.acescan.LENGTH0.0130.0000.012
hg18.ccdsGene.LENGTH0.0420.0000.041
hg18.ensGene.LENGTH0.3700.0030.371
hg18.exoniphy.LENGTH2.6450.1172.763
hg18.geneSymbol.LENGTH0.1910.0120.203
hg18.geneid.LENGTH0.1280.0020.130
hg18.genscan.LENGTH0.1000.0040.103
hg18.knownGene.LENGTH0.2830.0000.284
hg18.knownGeneOld3.LENGTH0.1230.0000.122
hg18.refGene.LENGTH0.1880.0000.189
hg18.sgpGene.LENGTH0.1360.0000.137
hg18.sibGene.LENGTH0.6580.0040.662
hg18.xenoRefGene.LENGTH0.7460.0000.745
hg19.ccdsGene.LENGTH0.0480.0000.047
hg19.ensGene.LENGTH0.5520.0040.556
hg19.exoniphy.LENGTH0.5280.0040.531
hg19.geneSymbol.LENGTH0.1240.0000.124
hg19.knownGene.LENGTH0.2240.0000.225
hg19.nscanGene.LENGTH0.1840.0040.189
hg19.refGene.LENGTH0.1300.0000.131
hg19.xenoRefGene.LENGTH0.5580.0000.559
loxAfr3.xenoRefGene.LENGTH1.4980.0081.507
mm7.ensGene.LENGTH0.1890.0040.194
mm7.geneSymbol.LENGTH0.1160.0040.120
mm7.geneid.LENGTH0.1030.0000.103
mm7.genscan.LENGTH0.0770.0040.081
mm7.knownGene.LENGTH0.1280.0000.128
mm7.refGene.LENGTH0.1250.0000.126
mm7.sgpGene.LENGTH0.0920.0000.092
mm7.xenoRefGene.LENGTH0.4930.0040.497
mm8.ccdsGene.LENGTH0.0260.0000.027
mm8.ensGene.LENGTH0.0990.0040.103
mm8.geneSymbol.LENGTH0.110.000.11
mm8.geneid.LENGTH0.0910.0000.092
mm8.genscan.LENGTH0.0670.0040.072
mm8.knownGene.LENGTH0.1200.0020.121
mm8.nscanGene.LENGTH0.0700.0060.076
mm8.refGene.LENGTH0.1090.0040.114
mm8.sgpGene.LENGTH0.0900.0000.091
mm8.sibGene.LENGTH0.3220.0040.327
mm8.xenoRefGene.LENGTH0.9950.0121.007
mm9.acembly.LENGTH0.5280.0200.549
mm9.ccdsGene.LENGTH0.0340.0040.039
mm9.ensGene.LENGTH0.2300.0000.231
mm9.exoniphy.LENGTH0.6020.0280.630
mm9.geneSymbol.LENGTH0.1350.0000.135
mm9.geneid.LENGTH0.1100.0040.114
mm9.genscan.LENGTH0.0820.0000.082
mm9.knownGene.LENGTH0.1520.0000.153
mm9.nscanGene.LENGTH0.0880.0000.087
mm9.refGene.LENGTH0.1030.0000.104
mm9.sgpGene.LENGTH0.1010.0000.101
mm9.xenoRefGene.LENGTH0.5370.0040.540
monDom1.genscan.LENGTH0.0760.0000.075
monDom4.ensGene.LENGTH0.0960.0000.095
monDom4.geneSymbol.LENGTH0.0050.0000.004
monDom4.genscan.LENGTH0.0640.0000.064
monDom4.nscanGene.LENGTH0.0680.0000.068
monDom4.refGene.LENGTH0.0040.0000.005
monDom4.xenoRefGene.LENGTH0.5820.0000.583
monDom5.ensGene.LENGTH0.1630.0000.163
monDom5.geneSymbol.LENGTH0.0040.0000.004
monDom5.genscan.LENGTH0.0620.0000.063
monDom5.nscanGene.LENGTH0.1270.0000.128
monDom5.refGene.LENGTH0.0040.0000.003
monDom5.xenoRefGene.LENGTH0.9580.0000.958
ornAna1.ensGene.LENGTH0.1660.0030.170
ornAna1.geneSymbol.LENGTH0.0030.0000.004
ornAna1.refGene.LENGTH0.0030.0000.003
ornAna1.xenoRefGene.LENGTH0.9430.0120.955
oryLat2.ensGene.LENGTH0.0950.0080.103
oryLat2.geneSymbol.LENGTH0.0050.0000.005
oryLat2.refGene.LENGTH0.0040.0000.004
oryLat2.xenoRefGene.LENGTH1.7260.0161.741
panTro1.ensGene.LENGTH0.1480.0000.147
panTro1.geneid.LENGTH0.0680.0000.067
panTro1.genscan.LENGTH0.0810.0000.081
panTro1.xenoRefGene.LENGTH0.1850.0040.190
panTro2.ensGene.LENGTH0.1980.0040.202
panTro2.geneSymbol.LENGTH0.1820.0000.182
panTro2.genscan.LENGTH0.1030.0000.103
panTro2.nscanGene.LENGTH0.0840.0000.083
panTro2.refGene.LENGTH0.1660.0000.166
panTro2.xenoRefGene.LENGTH1.1170.0041.121
petMar1.xenoRefGene.LENGTH0.5990.0000.599
ponAbe2.ensGene.LENGTH0.1280.0000.128
ponAbe2.geneSymbol.LENGTH0.0150.0000.015
ponAbe2.genscan.LENGTH0.0830.0000.083
ponAbe2.nscanGene.LENGTH0.0930.0000.094
ponAbe2.refGene.LENGTH0.0180.0000.018
ponAbe2.xenoRefGene.LENGTH1.7810.0071.788
priPac1.xenoRefGene.LENGTH1.1800.0081.187
rheMac2.ensGene.LENGTH0.2770.0040.281
rheMac2.geneSymbol.LENGTH0.0090.0000.009
rheMac2.geneid.LENGTH0.120.000.12
rheMac2.nscanGene.LENGTH0.0730.0000.074
rheMac2.refGene.LENGTH0.0060.0000.006
rheMac2.sgpGene.LENGTH1.3540.1641.518
rheMac2.xenoRefGene.LENGTH1.0480.0001.047
rn3.ensGene.LENGTH0.1940.0000.193
rn3.geneSymbol.LENGTH0.0600.0040.063
rn3.geneid.LENGTH0.0610.0000.060
rn3.genscan.LENGTH0.0750.0000.075
rn3.knownGene.LENGTH0.0250.0000.025
rn3.nscanGene.LENGTH0.0750.0000.075
rn3.refGene.LENGTH0.0580.0000.058
rn3.sgpGene.LENGTH0.0660.0000.066
rn3.xenoRefGene.LENGTH0.9750.0120.987
rn4.ensGene.LENGTH0.2490.0000.249
rn4.geneSymbol.LENGTH0.0620.0000.062
rn4.geneid.LENGTH0.1040.0000.104
rn4.genscan.LENGTH0.0710.0000.071
rn4.knownGene.LENGTH0.0290.0000.028
rn4.nscanGene.LENGTH0.0640.0000.064
rn4.refGene.LENGTH0.0660.0000.066
rn4.sgpGene.LENGTH0.1030.0000.104
rn4.xenoRefGene.LENGTH0.6750.0000.675
sacCer1.ensGene.LENGTH0.0210.0000.021
sacCer2.ensGene.LENGTH0.0180.0000.018
strPur1.geneSymbol.LENGTH0.0040.0000.004
strPur1.genscan.LENGTH0.0730.0040.076
strPur1.refGene.LENGTH0.0050.0000.005
strPur1.xenoRefGene.LENGTH1.0620.0041.066
strPur2.geneSymbol.LENGTH0.0040.0000.004
strPur2.genscan.LENGTH0.1240.0020.125
strPur2.refGene.LENGTH0.0020.0020.004
strPur2.xenoRefGene.LENGTH1.1440.0081.152
supportedGeneIDs0.1100.0202.707
supportedGenomes0.2640.0081.052
taeGut1.ensGene.LENGTH0.1110.0000.110
taeGut1.geneSymbol.LENGTH0.0040.0000.004
taeGut1.genscan.LENGTH0.0450.0000.045
taeGut1.nscanGene.LENGTH0.0310.0040.036
taeGut1.refGene.LENGTH0.0000.0040.004
taeGut1.xenoRefGene.LENGTH0.7940.0000.794
tetNig1.ensGene.LENGTH0.1390.0000.140
tetNig1.geneid.LENGTH0.1390.0000.138
tetNig1.genscan.LENGTH0.1070.0000.107
tetNig1.nscanGene.LENGTH0.1180.0000.118
tetNig2.ensGene.LENGTH0.1100.0040.115
unfactor0.0040.0000.004
xenTro1.genscan.LENGTH0.1110.0100.121
xenTro2.ensGene.LENGTH0.1550.0100.165
xenTro2.geneSymbol.LENGTH0.040.000.04
xenTro2.genscan.LENGTH0.1030.0080.111
xenTro2.refGene.LENGTH0.0370.0000.037