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This page was generated on 2022-02-17 08:36:54 -0500 (Thu, 17 Feb 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 1362
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for SCATEData on nebbiolo2


To the developers/maintainers of the SCATEData package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 336/406HostnameOS / ArchINSTALLBUILDCHECK
SCATEData 1.5.1  (landing page)
Wenpin Hou
Snapshot Date: 2022-02-17 04:00:02 -0500 (Thu, 17 Feb 2022)
git_url: https://git.bioconductor.org/packages/SCATEData
git_branch: master
git_last_commit: 8e0b031
git_last_commit_date: 2021-11-21 23:43:35 -0500 (Sun, 21 Nov 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: SCATEData
Version: 1.5.1
Command: /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:SCATEData.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings SCATEData_1.5.1.tar.gz
StartedAt: 2022-02-17 07:56:53 -0500 (Thu, 17 Feb 2022)
EndedAt: 2022-02-17 08:02:22 -0500 (Thu, 17 Feb 2022)
EllapsedTime: 328.9 seconds
RetCode: 0
Status:   OK  
CheckDir: SCATEData.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:SCATEData.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings SCATEData_1.5.1.tar.gz
###
##############################################################################
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* using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/SCATEData.Rcheck’
* using R Under development (unstable) (2022-01-05 r81451)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SCATEData/DESCRIPTION’ ... OK
* this is package ‘SCATEData’ version ‘1.5.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SCATEData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 336.2Mb
  sub-directories of 1Mb or more:
    extdata  336.0Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: hg19.rds.Rd:18-19: Dropping empty section \usage
prepare_Rd: mm10.rds.Rd:18-19: Dropping empty section \usage
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
hg19.rds 6.964  0.424   7.389
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.15-data-experiment/meat/SCATEData.Rcheck/00check.log’
for details.



Installation output

SCATEData.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD INSTALL SCATEData
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.15-data-experiment/R/library’
* installing *source* package ‘SCATEData’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
snapshotDate(): 2022-02-15
** testing if installed package can be loaded from final location
snapshotDate(): 2022-02-15
** testing if installed package keeps a record of temporary installation path
* DONE (SCATEData)

Tests output


Example timings

SCATEData.Rcheck/SCATEData-Ex.timings

nameusersystemelapsed
GSM1596831.bam0.0770.0040.082
GSM1596840.bam0.0910.0000.092
GSM1596874.bam0.0520.0040.056
GSM1596881.bam0.0570.0000.058
GSM1596940.bam0.0210.0000.021
GSM1596942.bam0.0550.0000.056
GSM1596944.bam1.0040.0281.033
GSM1596961.bam0.1040.0000.105
GSM1597041.bam0.0810.0000.081
GSM1597096.bam0.0790.0120.091
SRR1779746.bam0.1240.0160.140
SRR1779805.bam0.1470.0080.155
SRR1779856.bam0.0230.0000.024
SRR1779874.bam0.2060.0080.214
SRR1779956.bam0.1370.0000.137
SRR1779959.bam0.1410.0160.157
SRR1779973.bam0.0850.0120.096
SRR1780018.bam0.0460.0040.051
SRR1780020.bam0.0810.0040.085
SRR1780054.bam0.1760.0120.188
hg19.rds6.9640.4247.389
mm10.rds3.2030.3443.548