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This page was generated on 2022-02-17 08:36:53 -0500 (Thu, 17 Feb 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 1362
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for QDNAseq.mm10 on nebbiolo2


To the developers/maintainers of the QDNAseq.mm10 package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 297/406HostnameOS / ArchINSTALLBUILDCHECK
QDNAseq.mm10 1.25.0  (landing page)
Daoud Sie
Snapshot Date: 2022-02-17 04:00:02 -0500 (Thu, 17 Feb 2022)
git_url: https://git.bioconductor.org/packages/QDNAseq.mm10
git_branch: master
git_last_commit: ec42266
git_last_commit_date: 2021-10-26 12:17:13 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: QDNAseq.mm10
Version: 1.25.0
Command: /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:QDNAseq.mm10.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings QDNAseq.mm10_1.25.0.tar.gz
StartedAt: 2022-02-17 07:48:59 -0500 (Thu, 17 Feb 2022)
EndedAt: 2022-02-17 07:51:57 -0500 (Thu, 17 Feb 2022)
EllapsedTime: 177.4 seconds
RetCode: 0
Status:   OK  
CheckDir: QDNAseq.mm10.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:QDNAseq.mm10.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings QDNAseq.mm10_1.25.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/QDNAseq.mm10.Rcheck’
* using R Under development (unstable) (2022-01-05 r81451)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘QDNAseq.mm10/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘QDNAseq.mm10’ version ‘1.25.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘QDNAseq.mm10’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 31.3Mb
  sub-directories of 1Mb or more:
    data  31.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
mm10.1kbp.SR50 19.854  0.548  20.403
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.15-data-experiment/meat/QDNAseq.mm10.Rcheck/00check.log’
for details.



Installation output

QDNAseq.mm10.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD INSTALL QDNAseq.mm10
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.15-data-experiment/R/library’
* installing *source* package ‘QDNAseq.mm10’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (QDNAseq.mm10)

Tests output


Example timings

QDNAseq.mm10.Rcheck/QDNAseq.mm10-Ex.timings

nameusersystemelapsed
QDNAseq.mm10-package1.0300.0241.054
mm10.1000kbp.SR500.0190.0040.023
mm10.100kbp.SR500.1340.0080.142
mm10.10kbp.SR501.8770.0481.926
mm10.15kbp.SR500.9730.0401.013
mm10.1kbp.SR5019.854 0.54820.403
mm10.30kbp.SR500.4010.0360.437
mm10.500kbp.SR500.0380.0000.037
mm10.50kbp.SR500.2650.0280.292
mm10.5kbp.SR502.3880.1522.540