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This page was generated on 2022-02-17 08:36:52 -0500 (Thu, 17 Feb 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 1362
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for FieldEffectCrc on nebbiolo2


To the developers/maintainers of the FieldEffectCrc package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 120/406HostnameOS / ArchINSTALLBUILDCHECK
FieldEffectCrc 1.5.0  (landing page)
Christopher Dampier
Snapshot Date: 2022-02-17 04:00:02 -0500 (Thu, 17 Feb 2022)
git_url: https://git.bioconductor.org/packages/FieldEffectCrc
git_branch: master
git_last_commit: 10b1447
git_last_commit_date: 2021-10-26 12:38:45 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: FieldEffectCrc
Version: 1.5.0
Command: /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:FieldEffectCrc.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings FieldEffectCrc_1.5.0.tar.gz
StartedAt: 2022-02-17 07:21:18 -0500 (Thu, 17 Feb 2022)
EndedAt: 2022-02-17 07:27:01 -0500 (Thu, 17 Feb 2022)
EllapsedTime: 342.6 seconds
RetCode: 0
Status:   OK  
CheckDir: FieldEffectCrc.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:FieldEffectCrc.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings FieldEffectCrc_1.5.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/FieldEffectCrc.Rcheck’
* using R Under development (unstable) (2022-01-05 r81451)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘FieldEffectCrc/DESCRIPTION’ ... OK
* this is package ‘FieldEffectCrc’ version ‘1.5.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘FieldEffectCrc’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
FieldEffectCrc 26.572  1.624  29.793
cohort_A       10.799  0.809  12.622
cohort_C        6.636  0.397   7.981
reorder_assays  6.093  0.664   7.146
make_txi        5.504  0.548   6.421
cohort_B        4.435  0.167   5.606
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

FieldEffectCrc.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD INSTALL FieldEffectCrc
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.15-data-experiment/R/library’
* installing *source* package ‘FieldEffectCrc’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
snapshotDate(): 2022-02-15
** testing if installed package can be loaded from final location
snapshotDate(): 2022-02-15
** testing if installed package keeps a record of temporary installation path
* DONE (FieldEffectCrc)

Tests output

FieldEffectCrc.Rcheck/tests/runTests.Rout


R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("FieldEffectCrc")
snapshotDate(): 2022-02-15
snapshotDate(): 2022-02-15
see ?FieldEffectCrc and browseVignettes('FieldEffectCrc') for documentation
loading from cache
require("SummarizedExperiment")
snapshotDate(): 2022-02-15
see ?FieldEffectCrc and browseVignettes('FieldEffectCrc') for documentation
loading from cache
snapshotDate(): 2022-02-15
see ?FieldEffectCrc and browseVignettes('FieldEffectCrc') for documentation
loading from cache


RUNIT TEST PROTOCOL -- Thu Feb 17 07:26:57 2022 
*********************************************** 
Number of test functions: 3 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
FieldEffectCrc RUnit Tests - 3 test functions, 0 errors, 0 failures
Number of test functions: 3 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
 23.645   2.036  27.118 

Example timings

FieldEffectCrc.Rcheck/FieldEffectCrc-Ex.timings

nameusersystemelapsed
FieldEffectCrc26.572 1.62429.793
cohort_A10.799 0.80912.622
cohort_B4.4350.1675.606
cohort_C6.6360.3977.981
make_txi5.5040.5486.421
reorder_assays6.0930.6647.146